MD17G1094100.v1.1

Translation initiation factor SUI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0008958
Physical Location & Seq
Forward (+)
7890778 .. 7892639
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1094100.v1.1.491

Sequence Viewer

Length: 342 bp
ATGTCTGAATTCGACACCCAGGTCCCATCTGCTTTTGATCCCTTTGCTGATGCAAATGCTGAGAACTCAGGTGCAGGGACAAAGGAGTATGTGCATGTCCGTGTACAGCAGCGCAACGGGAGGAAAAGCCTGACTACTGTACAAGGATTGAAGAAGGAATACAGCTACAATAAGATACTAAAGGACCTCAAGAAAGAGTTCTGTTGTAATGGTACTGTCGTTGAGGATCCTGAGTTAGGCCAGGTCATACAACTTCAGGGGGACCAGAGAAAGAATGTTTCCTCCTTTCTTGTGCAGGCCGGCATTGTTAAGAAGGAGCACATCAAAATTCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

8.55

Isoelectric Point (pI)

25.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 1.1e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AclWI GGATC 3 cut(s) 32, 221, 234
AcsI RAATTY 2 cut(s) 8, 327
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 3 cut(s) 105, 141, 214
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 18, 240
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 3 cut(s) 32, 221, 234
AoxI GGCC 2 cut(s) 238, 297
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 8, 327
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 3 cut(s) 22, 184, 262
AvaII GGWCC 3 cut(s) 22, 184, 262
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BamHI GGATCC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 20, 242
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 20, 242
Bme18I GGWCC 3 cut(s) 22, 184, 262
BmgT120I GGNCC 3 cut(s) 22, 184, 262
BmiI GGNNCC 3 cut(s) 24, 228, 263
BmrFI CCNGG 2 cut(s) 20, 242
BmsI GCATC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 299
BseBI CCWGG 2 cut(s) 20, 242
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 3 cut(s) 51, 81, 222
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 2 cut(s) 93, 314
BshFI GGCC 2 cut(s) 240, 299
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 3 cut(s) 8, 91, 275
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 3 cut(s) 8, 91, 275
BsnI GGCC 2 cut(s) 240, 299
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1407I TGTACA 2 cut(s) 103, 139
Bsp143I GATC 2 cut(s) 37, 226
BspANI GGCC 2 cut(s) 240, 299
BspCNI CTCAG 3 cut(s) 52, 80, 223
BspLI GGNNCC 3 cut(s) 24, 228, 263
BspPI GGATC 3 cut(s) 32, 221, 234
BsrFI RCCGGY 1 cut(s) 299
BsrGI TGTACA 2 cut(s) 103, 139
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 37, 226
Bst2UI CCWGG 2 cut(s) 20, 242
Bst4CI ACNGT 2 cut(s) 139, 217
BstAUI TGTACA 2 cut(s) 103, 139
BstC8I GCNNGC 2 cut(s) 297, 301
BstDEI CTNAG 3 cut(s) 60, 67, 231
BstENI CCTNNNNNAGG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 40, 229
BstMBI GATC 2 cut(s) 37, 226
BstNI CCWGG 2 cut(s) 20, 242
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 18, 240
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 2 cut(s) 240, 299
Cac8I GCNNGC 2 cut(s) 297, 301
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 22, 184, 262
Csp6I GTAC 3 cut(s) 104, 140, 213
CviAII CATG 2 cut(s) 95, 332
CviJI RGCY 4 cut(s) 129, 165, 240, 299
CviKI_1 RGCY 4 cut(s) 129, 165, 240, 299
CviQI GTAC 3 cut(s) 104, 140, 213
DdeI CTNAG 3 cut(s) 60, 67, 231
DpnI GATC 2 cut(s) 39, 228
DpnII GATC 2 cut(s) 37, 226
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 22, 184, 262
Eco57I CTGAAG 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 22, 184
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 18, 240
FaeI CATG 2 cut(s) 98, 335
FaiI YATR 4 cut(s) 90, 96, 248, 333
FaqI GGGAC 3 cut(s) 8, 91, 275
FatI CATG 2 cut(s) 94, 331
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 240, 299
HapII CCGG 1 cut(s) 300
HhaI GCGC 1 cut(s) 114
Hin1II CATG 2 cut(s) 98, 335
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 190, 230
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 148, 307
HpyCH4III ACNGT 2 cut(s) 139, 217
HpyCH4V TGCA 4 cut(s) 53, 74, 94, 295
HpyF3I CTNAG 3 cut(s) 60, 67, 231
Hsp92II CATG 2 cut(s) 98, 335
HspAI GCGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 37, 226
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 40
MalI GATC 2 cut(s) 39, 228
MboI GATC 2 cut(s) 37, 226
MboII GAAGA 1 cut(s) 163
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 8, 327
MnlI CCTC 4 cut(s) 114, 197, 217, 292
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 20, 242
MvaI CCWGG 2 cut(s) 20, 242
NaeI GCCGGC 1 cut(s) 301
NdeII GATC 2 cut(s) 37, 226
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 2 cut(s) 98, 335
NlaIV GGNNCC 3 cut(s) 24, 228, 263
NspI RCATGY 1 cut(s) 98
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 111
PpuMI RGGWCCY 2 cut(s) 22, 184
Psp5II RGGWCCY 2 cut(s) 22, 184
Psp6I CCWGG 2 cut(s) 18, 240
PspGI CCWGG 2 cut(s) 18, 240
PspN4I GGNNCC 3 cut(s) 24, 228, 263
PspPI GGNCC 3 cut(s) 22, 184, 262
PspPPI RGGWCCY 2 cut(s) 22, 184
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 3 cut(s) 105, 141, 214
RsaNI GTAC 3 cut(s) 104, 140, 213
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 37, 226
Sau96I GGNCC 3 cut(s) 22, 184, 262
ScrFI CCNGG 2 cut(s) 20, 242
SduI GDGCHC 1 cut(s) 321
SetI ASST 5 cut(s) 24, 73, 167, 189, 246
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 3 cut(s) 22, 184, 262
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 8, 327
StyD4I CCNGG 2 cut(s) 18, 240
TaaI ACNGT 2 cut(s) 139, 217
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 8, 327
TatI WGTACW 2 cut(s) 103, 139
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 3 cut(s) 22, 184, 262
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 2 cut(s) 8, 327
XceI RCATGY 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.