RLG00000021185

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008958
Physical Location & Seq
Reverse (-)
72768667 .. 72770097
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021185

Sequence Viewer

Length: 342 bp
ATGTCTGAACTCGAAACCCAGGTCCCATCTACTTTTGACCCCTTTGCTGACGCCAATGCTGAGGACTCGGGTGCCGGGACAAAAGAATACGTGCACGTGCGTGTACAACAACGCAACGGGAGGAAAAGCCTGACTACTGTGCAAGGATTGAAGAAGGAATACAGCTACAACAAAATACTTAAGGACCTCAAAAAGGAGTTCTGCTGTAATGGTACTGTTGTCCAGGATCCTGAGTTAGGGCAGGTTATACAACTTCAGGGGGACCAAAGAAAGAATGTTTCCTCCTTCCTTGTGCAGGCTGGCATTGTTAAGAAGGAGAATATCAAGCTTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

114

Amino Acids

12.65

Weight (kDa)

8.55

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 1.2e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 71
AclWI GGATC 2 cut(s) 221, 234
AcuI CTGAAG 1 cut(s) 239
AcvI CACGTG 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 105, 214
AfiI CCNNNNNNNGG 3 cut(s) 193, 236, 295
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 18, 222
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 2 cut(s) 165, 328
AluI AGCT 2 cut(s) 165, 328
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 2 cut(s) 221, 234
Ama87I CYCGRG 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 92
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspS9I GGNCC 3 cut(s) 22, 184, 262
AsuC2I CCSGG 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 3 cut(s) 22, 184, 262
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbrPI CACGTG 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 20, 224
BcnI CCSGG 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 232
Bme1390I CCNGG 3 cut(s) 20, 76, 224
Bme18I GGWCC 3 cut(s) 22, 184, 262
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 22, 184, 262
BmiI GGNNCC 4 cut(s) 24, 73, 228, 263
BmrFI CCNGG 3 cut(s) 20, 76, 224
Bpu10I CCTNAGC 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 2 cut(s) 91, 97
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 236, 295
BseBI CCWGG 2 cut(s) 20, 224
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 193, 236, 295
BseMII CTCAG 2 cut(s) 51, 222
BseSI GKGCMC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 3 cut(s) 8, 91, 275
BslI CCNNNNNNNGG 3 cut(s) 193, 236, 295
BsmFI GGGAC 3 cut(s) 8, 91, 275
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 52, 223
BspLI GGNNCC 4 cut(s) 24, 73, 228, 263
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 2 cut(s) 221, 234
BspT107I GGYRCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 20, 224
Bst4CI ACNGT 3 cut(s) 139, 217, 335
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 103
BstBAI YACGTR 2 cut(s) 91, 97
BstC8I GCNNGC 2 cut(s) 297, 301
BstDEI CTNAG 2 cut(s) 60, 231
BstENI CCTNNNNNAGG 3 cut(s) 191, 234, 293
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 2 cut(s) 20, 224
BstSCI CCNGG 3 cut(s) 18, 74, 222
BstSLI GKGCMC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 297, 301
Cfr13I GGNCC 3 cut(s) 22, 184, 262
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 104, 213
CviJI RGCY 4 cut(s) 129, 165, 299, 328
CviKI_1 RGCY 4 cut(s) 129, 165, 299, 328
CviQI GTAC 2 cut(s) 104, 213
DdeI CTNAG 2 cut(s) 60, 231
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 22, 184, 262
Eco57I CTGAAG 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 67
EcoNI CCTNNNNNAGG 3 cut(s) 191, 234, 293
EcoO109I RGGNCCY 2 cut(s) 22, 184
EcoRII CCWGG 2 cut(s) 18, 222
FaiI YATR 1 cut(s) 248
FaqI GGGAC 3 cut(s) 8, 91, 275
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 2 cut(s) 7, 341
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 94, 104
HpyAV CCTTC 3 cut(s) 148, 295, 307
HpyCH4III ACNGT 3 cut(s) 139, 217, 335
HpyCH4IV ACGT 2 cut(s) 90, 96
HpyCH4V TGCA 3 cut(s) 94, 142, 295
HpyF3I CTNAG 2 cut(s) 60, 231
HpySE526I ACGT 2 cut(s) 90, 96
Hsp92I GRCGYC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 226
MaeII ACGT 2 cut(s) 90, 96
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 163
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 55, 114, 197, 292
MseI TTAA 2 cut(s) 180, 309
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 3 cut(s) 20, 76, 224
MvaI CCWGG 2 cut(s) 20, 224
NciI CCSGG 1 cut(s) 76
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 4 cut(s) 24, 73, 228, 263
OliI CACNNNNGTG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 222
PleI GAGTC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 2 cut(s) 91, 97
PpuMI RGGWCCY 2 cut(s) 22, 184
Psp5II RGGWCCY 2 cut(s) 22, 184
Psp6I CCWGG 2 cut(s) 18, 222
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 2 cut(s) 18, 222
PspN4I GGNNCC 4 cut(s) 24, 73, 228, 263
PspPI GGNCC 3 cut(s) 22, 184, 262
PspPPI RGGWCCY 2 cut(s) 22, 184
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 105, 214
RsaNI GTAC 2 cut(s) 104, 213
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 180, 309
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 3 cut(s) 22, 184, 262
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 3 cut(s) 20, 76, 224
SduI GDGCHC 1 cut(s) 96
SetI ASST 7 cut(s) 24, 93, 99, 167, 189, 246, 330
SinI GGWCC 3 cut(s) 22, 184, 262
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 18, 74, 222
TaaI ACNGT 3 cut(s) 139, 217, 335
TaiI ACGT 2 cut(s) 93, 99
TaqI TCGA 1 cut(s) 12
TatI WGTACW 1 cut(s) 103
Tru1I TTAA 2 cut(s) 180, 309
Tru9I TTAA 2 cut(s) 180, 309
Vha464I CTTAAG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 3 cut(s) 22, 184, 262
XagI CCTNNNNNAGG 3 cut(s) 191, 234, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.