AT5G54760

factor SUI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008958
Physical Location & Seq
Forward (+)
22243800 .. 22245810
2011 bp
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UTR
Exon/CDS
Intron
AT5G54760.1

Sequence Viewer

Length: 342 bp
ATGTCTGAACTTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAGGTGCCGGAACAAAAGAATACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCTTGACAACCGTCCAGGGCCTGAAGAAAGAGTACAGCTATACCAAGATACTTAAGGACCTCAAGAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTCGGACAGGTTATACAGCTTCAAGGTGACCAACGTAAGAACGTCTCCACATTCCTTGTCCAGGCTGGTTTGGTGAAGAAGGATAACATCAAGATCCATGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

113

Amino Acids

12.62

Weight (kDa)

8.55

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 4.1e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AclWI GGATC 2 cut(s) 32, 322
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 3 cut(s) 18, 141, 294
AluBI AGCT 3 cut(s) 129, 165, 253
AluI AGCT 3 cut(s) 129, 165, 253
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 2 cut(s) 32, 322
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 109, 204
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 145, 184
AsuHPI GGTGA 2 cut(s) 272, 319
AvaII GGWCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbvI GCAGC 2 cut(s) 121, 191
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 3 cut(s) 20, 143, 296
BcoDI GTCTC 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 110, 205
BlsI GCNGC 2 cut(s) 111, 206
Bme1390I CCNGG 3 cut(s) 20, 143, 296
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 145, 184
BmiI GGNNCC 2 cut(s) 24, 73
BmrFI CCNGG 3 cut(s) 20, 143, 296
BmsI GCATC 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 18, 142, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 295
BseBI CCWGG 3 cut(s) 20, 143, 296
BseDI CCNNGG 3 cut(s) 18, 142, 331
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 121, 191
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 283
BsmBI CGTCTC 1 cut(s) 283
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 37, 327
Bsp19I CCATGG 1 cut(s) 331
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 24, 73
BspPI GGATC 2 cut(s) 32, 322
BspT107I GGYRCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 18, 142, 331
BssMI GATC 2 cut(s) 37, 327
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 20, 143, 296
Bst4CI ACNGT 2 cut(s) 139, 217
BstAFI CTTAAG 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 331
BstEII GGTNACC 1 cut(s) 260
BstENI CCTNNNNNAGG 1 cut(s) 293
BstKTI GATC 2 cut(s) 40, 330
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 37, 327
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 3 cut(s) 20, 143, 296
BstPAI GACNNNNGTC 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 3 cut(s) 18, 141, 294
BstV1I GCAGC 2 cut(s) 121, 191
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 213
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 145, 184
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 4 cut(s) 16, 51, 271, 306
CviAII CATG 1 cut(s) 332
CviJI RGCY 5 cut(s) 129, 147, 165, 253, 299
CviKI_1 RGCY 5 cut(s) 129, 147, 165, 253, 299
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 39, 329
DpnII GATC 2 cut(s) 37, 327
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 170
Eco91I GGTNACC 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 145, 184
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 18, 141, 294
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 1 cut(s) 335
FaiI YATR 4 cut(s) 96, 168, 248, 333
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 110, 205
Fsp4HI GCNGC 2 cut(s) 110, 205
GluI GCNGC 2 cut(s) 110, 205
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 3 cut(s) 14, 65, 227
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 272, 319
Hpy188I TCNGA 3 cut(s) 7, 232, 239
Hpy188III TCNNGA 3 cut(s) 190, 224, 325
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 139, 217
HpyCH4IV ACGT 3 cut(s) 90, 268, 276
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 3 cut(s) 90, 268, 276
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 37, 327
Lsp1109I GCAGC 2 cut(s) 121, 191
LweI GCATC 1 cut(s) 40
MaeII ACGT 3 cut(s) 90, 268, 276
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 39, 329
MboI GATC 2 cut(s) 37, 327
MboII GAAGA 2 cut(s) 163, 322
MflI RGATCY 1 cut(s) 327
MlyI GAGTC 2 cut(s) 8, 59
MnlI CCTC 2 cut(s) 55, 197
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 3 cut(s) 20, 143, 296
MvaI CCWGG 3 cut(s) 20, 143, 296
MwoI GCNNNNNNNGC 1 cut(s) 210
NcoI CCATGG 1 cut(s) 331
NdeII GATC 2 cut(s) 37, 327
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 24, 73
NmuCI GTSAC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 111, 206
PleI GAGTC 2 cut(s) 8, 59
PpsI GAGTC 2 cut(s) 8, 59
PpuMI RGGWCCY 1 cut(s) 184
PshAI GACNNNNGTC 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 3 cut(s) 18, 141, 294
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 18, 141, 294
PspN4I GGNNCC 2 cut(s) 24, 73
PspPI GGNCC 2 cut(s) 145, 184
PspPPI RGGWCCY 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 110, 205
Sau3AI GATC 2 cut(s) 37, 327
Sau96I GGNCC 2 cut(s) 145, 184
SchI GAGTC 2 cut(s) 8, 59
ScrFI CCNGG 3 cut(s) 20, 143, 296
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 179, 188
SmoI CTYRAG 2 cut(s) 179, 188
StyD4I CCNGG 3 cut(s) 18, 141, 294
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 139, 217
TaiI ACGT 3 cut(s) 93, 271, 279
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 34, 220
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 109, 204
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 2 cut(s) 30, 89
TspRI CASTG 2 cut(s) 34, 220
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.