AT1G54390

PHD finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001816
Physical Location & Seq
Reverse (-)
20304515 .. 20307110
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54390.1

Sequence Viewer

Length: 921 bp
ATGGCTATTGCACGAACTGGAGTTTATGTTGATGATTACCTTGAGTATGCAAGCACTTTCCCTGCAGAGCTACAAAGATTACTAAACACAGTTCGCGAACTAGACGAGAGATCTCAATCGCTTATAAATCAGACAAGACAGCAAACTAAGTATTGCTTAGGGCTTGCTTCACAGAGTTCTAAAAAGGGTAATGGTAATCATTACAATAATGGTGGTCTTGATGAAGAGGAAACGATTGAGAAAATGCGTAAAGAGATTGAGTCTAGTCAGGAAAATGCGTTAAGTTTGTGTACCGAGAAGGTTTTATTGGCCCGACAAGCGTATGATCTTATAGATAGTCATGTAAAACGACTTGATGAAGATCTGAATAATTTTGCAGAAGATTTAAAGCAAGAGGGAAAAATTCCACCAGACGAGCCCTCTGTTCTTCCTCCACTACCTATAGTTCCTAAAGCGGAAAAGCGTAAGTCCTTCTATGGCACACCTCAGCCCAAGAAGATTGATTATAGAGATAGAGACTGGGATCGTGACAGGGATTTTGAGCTCATGCCTCCTCCAGGAAGCAATCGGAAAGACCTTATGCCAATTGAAGAGCAGCCAATCGATCCAAACGAACCAACTTACTGTGTCTGCCATCAGGTGTCCTTTGGAGACATGATTGCCTGTGACAATGAGAATGTGAGCCTGCTCTCCCAGCATCTTATTATTTATTTTTTAATGTATAGCTGTTATGATGAAACCTTTTGTTCCTGTTTCGACAGTGCCAAGGAGGTGAATGGTTTCACTATACATGCGTTGGCCTCACACCTGAGACCAGATTCAAAGGGAAATGGTACTGCCCCACCTGCAGACTCCTCCCACAGTCACACTAATATCATTTGTACCTGTGAGAAGGTATTGCTTTACTATCATCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

306

Amino Acids

34.85

Weight (kDa)

5.01

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 9 - 125 9.3e-19 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 125
AarI CACCTGC 1 cut(s) 853
Acc36I ACCTGC 1 cut(s) 853
AccII CGCG 1 cut(s) 96
AciI CCGC 1 cut(s) 455
AclWI GGATC 2 cut(s) 531, 599
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 3 cut(s) 292, 835, 883
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 2 cut(s) 590, 822
AjnI CCWGG 1 cut(s) 556
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 3 cut(s) 70, 544, 726
AluI AGCT 3 cut(s) 70, 544, 726
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 3 cut(s) 510, 645, 805
AlwI GGATC 2 cut(s) 531, 599
AoxI GGCC 2 cut(s) 309, 798
ApeKI GCWGC 1 cut(s) 595
ApoI RAATTY 1 cut(s) 402
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
Asp700I GAANNNNTTC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 784
BanII GRGCYC 2 cut(s) 420, 546
Bbv12I GWGCWC 1 cut(s) 546
BbvCI CCTCAGC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 607
BccI CCATC 1 cut(s) 642
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 3 cut(s) 510, 645, 805
BfaI CTAG 2 cut(s) 101, 264
BfmI CTRYAG 3 cut(s) 63, 441, 846
BfuAI ACCTGC 1 cut(s) 853
BglII AGATCT 2 cut(s) 110, 361
BisI GCNGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 597
Bme1390I CCNGG 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 706
BmuI ACTGGG 1 cut(s) 529
BpmI CTGGAG 2 cut(s) 39, 540
Bpu10I CCTNAGC 2 cut(s) 157, 486
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 603
BsaBI GATNNNNATC 2 cut(s) 115, 360
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 1 cut(s) 765
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse1I ACTGG 2 cut(s) 22, 524
Bse8I GATNNNNATC 2 cut(s) 115, 360
BseBI CCWGG 1 cut(s) 558
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 765
BseJI GATNNNNATC 2 cut(s) 115, 360
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 500, 800
BseNI ACTGG 2 cut(s) 22, 524
BseRI GAGGAG 2 cut(s) 543, 844
BseXI GCAGC 1 cut(s) 607
BseYI CCCAGC 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 311, 800
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 546
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 3 cut(s) 510, 645, 805
BsnI GGCC 2 cut(s) 311, 800
Bso31I GGTCTC 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 420, 546
Bsp143I GATC 5 cut(s) 110, 325, 361, 523, 604
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 1 cut(s) 455
BspANI GGCC 2 cut(s) 311, 800
BspCNI CTCAG 2 cut(s) 499, 801
BspDI ATCGAT 1 cut(s) 603
BspFNI CGCG 1 cut(s) 96
BspMAI CTGCAG 2 cut(s) 67, 850
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 2 cut(s) 531, 599
BspQI GCTCTTC 1 cut(s) 585
BspTNI GGTCTC 1 cut(s) 805
BsrI ACTGG 2 cut(s) 22, 524
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 5 cut(s) 110, 325, 361, 523, 604
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 4 cut(s) 91, 626, 761, 863
Bst6I CTCTTC 2 cut(s) 219, 585
BstC8I GCNNGC 3 cut(s) 52, 165, 686
BstDEI CTNAG 4 cut(s) 147, 157, 486, 809
BstENI CCTNNNNNAGG 1 cut(s) 555
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 5 cut(s) 113, 328, 364, 526, 607
BstMAI GTCTC 3 cut(s) 510, 645, 805
BstMBI GATC 5 cut(s) 110, 325, 361, 523, 604
BstMWI GCNNNNNNNGC 3 cut(s) 317, 694, 845
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 3 cut(s) 63, 441, 846
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 607
BstX2I RGATCY 2 cut(s) 110, 361
BstYI RGATCY 2 cut(s) 110, 361
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 2 cut(s) 311, 800
BsuTUI ATCGAT 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 766
BtuMI TCGCGA 1 cut(s) 96
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 3 cut(s) 52, 165, 686
Cfr13I GGNCC 1 cut(s) 310
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 3 cut(s) 291, 834, 882
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 4 cut(s) 341, 547, 655, 791
CviQI GTAC 3 cut(s) 291, 834, 882
DdeI CTNAG 4 cut(s) 147, 157, 486, 809
DpnI GATC 5 cut(s) 112, 327, 363, 525, 606
DpnII GATC 5 cut(s) 110, 325, 361, 523, 604
DraI TTTAAA 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 219, 585
EarI CTCTTC 2 cut(s) 219, 585
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 2 cut(s) 420, 546
Eco31I GGTCTC 1 cut(s) 805
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 765
EcoT38I GRGCYC 2 cut(s) 420, 546
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 4 cut(s) 344, 550, 658, 794
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 4 cut(s) 340, 546, 654, 790
Fnu4HI GCNGC 1 cut(s) 596
FriOI GRGCYC 2 cut(s) 420, 546
Fsp4HI GCNGC 1 cut(s) 596
FspBI CTAG 2 cut(s) 101, 264
GluI GCNGC 1 cut(s) 596
GsaI CCCAGC 1 cut(s) 697
GsuI CTGGAG 2 cut(s) 39, 540
HaeIII GGCC 2 cut(s) 311, 800
Hin1II CATG 4 cut(s) 344, 550, 658, 794
HinfI GANTC 3 cut(s) 260, 818, 851
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 4 cut(s) 132, 366, 570, 915
Hpy188III TCNNGA 4 cut(s) 95, 218, 269, 527
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 3 cut(s) 292, 481, 886
HpyCH4III ACNGT 4 cut(s) 91, 626, 761, 863
HpyCH4V TGCA 5 cut(s) 11, 50, 65, 377, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 694, 845
HpyF3I CTNAG 4 cut(s) 147, 157, 486, 809
Hsp92II CATG 4 cut(s) 344, 550, 658, 794
Kzo9I GATC 5 cut(s) 110, 325, 361, 523, 604
LguI GCTCTTC 1 cut(s) 585
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 706
MaeI CTAG 2 cut(s) 101, 264
MaeIII GTNAC 3 cut(s) 527, 665, 863
MalI GATC 5 cut(s) 112, 327, 363, 525, 606
MboI GATC 5 cut(s) 110, 325, 361, 523, 604
MboII GAAGA 6 cut(s) 236, 371, 392, 419, 508, 602
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 110, 361
MhlI GDGCHC 2 cut(s) 420, 546
MluCI AATT 3 cut(s) 370, 402, 585
MlyI GAGTC 2 cut(s) 269, 845
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 3 cut(s) 281, 386, 716
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 3 cut(s) 317, 694, 845
NdeII GATC 5 cut(s) 110, 325, 361, 523, 604
NlaIII CATG 4 cut(s) 344, 550, 658, 794
NmuCI GTSAC 3 cut(s) 527, 665, 863
NruI TCGCGA 1 cut(s) 96
NspI RCATGY 1 cut(s) 794
PaqCI CACCTGC 1 cut(s) 853
PciSI GCTCTTC 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 1 cut(s) 818
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 1 cut(s) 597
PleI GAGTC 2 cut(s) 268, 845
PpsI GAGTC 2 cut(s) 268, 845
PsiI TTATAA 1 cut(s) 125
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 556
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 1 cut(s) 556
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 2 cut(s) 67, 850
PsuI RGATCY 2 cut(s) 110, 361
RruI TCGCGA 1 cut(s) 96
RsaI GTAC 3 cut(s) 292, 835, 883
RsaNI GTAC 3 cut(s) 291, 834, 882
SacI GAGCTC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 3 cut(s) 281, 386, 716
SatI GCNGC 1 cut(s) 596
Sau3AI GATC 5 cut(s) 110, 325, 361, 523, 604
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 2 cut(s) 269, 845
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 2 cut(s) 420, 546
SfaNI GCATC 1 cut(s) 706
SfcI CTRYAG 3 cut(s) 63, 441, 846
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 3 cut(s) 370, 402, 585
SsiI CCGC 1 cut(s) 455
SspMI CTAG 2 cut(s) 101, 264
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 4 cut(s) 91, 626, 761, 863
TaqI TCGA 2 cut(s) 603, 756
TasI AATT 3 cut(s) 370, 402, 585
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 3 cut(s) 281, 386, 716
Tru9I TTAA 3 cut(s) 281, 386, 716
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 3 cut(s) 527, 665, 863
TseI GCWGC 1 cut(s) 595
Tsp45I GTSAC 3 cut(s) 527, 665, 863
TspDTI ATGAA 3 cut(s) 237, 372, 750
TspRI CASTG 1 cut(s) 766
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 2 cut(s) 101, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.