Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002893.1

Orthogroup ID

OG0001816

Physical Location & Seq

Genomic Coordinates Forward (+)

45306 .. 48238

Gene Structure 2933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002893.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgcgtagagaaattgaagccaatcaggagaatgcagtcagtctctgtactgagaaggttttgctcgcaaaacaagcttatgacctgatagatagtcatgtgaaacgactcgacgaggatctgaaccactttgcagaagatttaaagcaagaaggaaaaatatcacccgatgaaccagcaattcttcctccattacccatagtagtccccaaaactgaaaaacgaaagcccatttatggaacacctcaatcaaaaaggtttgattatagggatagggaatgggatcgagagcgtgacagggacttcgagctcatgccgcccccaggaagccacaaaaaggaatatgctattcccatggatgctgatcaaccaattgatccaaatgaacctacctactgtgtttgccatcaggtgtcttttggagatatgattgcctgtgacaatgaaaattgccaaggaggcgaatggttccattacgcatgtgttgggctcacaccagagacgagattcaagggaaagtgtgccaaggaggcgaatggttccattacgcatgtgttgggctcacaccagagacgagattcaagggaaagtggtattgtccaacatgcagactacaaccacaagggtaggatgttcatggcccatgcttgtcgtgtctgtatgtaccgttgtatacctaaacgaggggaacgatctggaatggatactggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ING PHD

Protein Analysis

237

Amino Acids

27.18

Weight (kDa)

6.21

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54390 AT1G54390 AT1G54390 AT1G54390 AT1G54390 AT1G54390 AT1G54390 AT1G54390
fragaria_vesca	FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_1g28050 FvH4_7g02040 FvH4_7g02040 FvH4_7g02040 FvH4_7g02040 FvH4_7g02040 FvH4_7g02040
malus_domestica	MD14G1002200.v1.1
prunus_persica	Prupe.7G003300_v2.0.a1
pyrus_communis	pycom49g00180
rosa_chinensis	RchiOBHm_Chr3g0497201
rosa_laevigata	RLG00000022471
rosa_multiflora	Rmu_co8398367.1_g000001 Rmu_sc0002893.1_g000011
rosa_roxburghii	Rroxscaffold_6G00388280
rosa_samantha	Rh3AG335100 Rh3BG372800 Rh3CG369200 Rh3DG370100
rosa_wichuraiana	Rw3G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	673
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	3 cut(s)	126, 291, 371
AfaI	GTAC	2 cut(s)	49, 665
AfiI	CCNNNNNNNGG	4 cut(s)	236, 323, 337, 683
AgsI	TTSAA	3 cut(s)	17, 511, 582
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	77, 310
AluI	AGCT	2 cut(s)	77, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	3 cut(s)	47, 494, 565
AlwI	GGATC	3 cut(s)	126, 291, 371
AlwNI	CAGNNNCTG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	639
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	1 cut(s)	156
BanII	GRGCYC	3 cut(s)	312, 492, 563
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	697
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	47, 494, 565
BfuI	GTATCC	1 cut(s)	697
BglI	GCCNNNNNGGC	2 cut(s)	459, 530
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	2 cut(s)	470, 541
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	4 cut(s)	322, 354, 454, 525
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 323, 337, 683
Bse1I	ACTGG	1 cut(s)	712
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	4 cut(s)	322, 354, 454, 525
BseGI	GGATG	2 cut(s)	364, 636
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	4 cut(s)	236, 323, 337, 683
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	712
BshFI	GGCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	312
BslFI	GGGAC	2 cut(s)	191, 314
BslI	CCNNNNNNNGG	4 cut(s)	236, 323, 337, 683
BsmAI	GTCTC	3 cut(s)	47, 494, 565
BsmBI	CGTCTC	2 cut(s)	494, 565
BsmFI	GGGAC	2 cut(s)	191, 314
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	312, 492, 563
Bsp143I	GATC	5 cut(s)	118, 283, 364, 376, 692
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	470, 541
BspPI	GGATC	3 cut(s)	126, 291, 371
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	4 cut(s)	322, 354, 454, 525
BssMI	GATC	5 cut(s)	118, 283, 364, 376, 692
BssNAI	GTATAC	1 cut(s)	674
BssT1I	CCWWGG	3 cut(s)	354, 454, 525
Bst1107I	GTATAC	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	398, 668
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	364, 636
BstKTI	GATC	5 cut(s)	121, 286, 367, 379, 695
BstMAI	GTCTC	3 cut(s)	47, 494, 565
BstMBI	GATC	5 cut(s)	118, 283, 364, 376, 692
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 316, 459, 530
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	3 cut(s)	483, 554, 608
BstSCI	CCNGG	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	364, 636
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	48, 664
CviAII	CATG	8 cut(s)	98, 313, 355, 480, 551, 605, 637, 644
CviJI	RGCY	8 cut(s)	20, 77, 229, 310, 330, 490, 561, 641
CviKI_1	RGCY	8 cut(s)	20, 77, 229, 310, 330, 490, 561, 641
CviQI	GTAC	2 cut(s)	48, 664
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	5 cut(s)	120, 285, 366, 378, 694
DpnII	GATC	5 cut(s)	118, 283, 364, 376, 692
DraI	TTTAAA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	3 cut(s)	354, 454, 525
Eco24I	GRGCYC	3 cut(s)	312, 492, 563
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	3 cut(s)	354, 454, 525
EcoT38I	GRGCYC	3 cut(s)	312, 492, 563
ErhI	CCWWGG	3 cut(s)	354, 454, 525
Esp3I	CGTCTC	2 cut(s)	494, 565
FaeI	CATG	8 cut(s)	101, 316, 358, 483, 554, 608, 640, 647
FaqI	GGGAC	2 cut(s)	191, 314
FatI	CATG	8 cut(s)	97, 312, 354, 479, 550, 604, 636, 643
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	2 cut(s)	371, 643
FriOI	GRGCYC	3 cut(s)	312, 492, 563
Fsp4HI	GCNGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	641
Hin1II	CATG	8 cut(s)	101, 316, 358, 483, 554, 608, 640, 647
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	3 cut(s)	108, 507, 578
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	3 cut(s)	26, 287, 696
Hpy8I	GTNNAC	1 cut(s)	674
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	49, 146
HpyCH4III	ACNGT	2 cut(s)	398, 668
HpyCH4V	TGCA	3 cut(s)	35, 134, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 316, 459, 530
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	101, 316, 358, 483, 554, 608, 640, 647
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	118, 283, 364, 376, 692
LweI	GCATC	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	293, 437
MalI	GATC	5 cut(s)	120, 285, 366, 378, 694
MboI	GATC	5 cut(s)	118, 283, 364, 376, 692
MboII	GAAGA	2 cut(s)	149, 176
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	312, 492, 563
MluCI	AATT	4 cut(s)	12, 180, 372, 448
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	6 cut(s)	109, 198, 255, 452, 523, 677
MseI	TTAA	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	74, 316, 459, 530
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	5 cut(s)	118, 283, 364, 376, 692
NlaIII	CATG	8 cut(s)	101, 316, 358, 483, 554, 608, 640, 647
NlaIV	GGNNCC	2 cut(s)	470, 541
NmuCI	GTSAC	2 cut(s)	293, 437
NspI	RCATGY	3 cut(s)	483, 554, 608
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	507, 578
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	470, 541
PspPI	GGNCC	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	49, 665
RsaNI	GTAC	2 cut(s)	48, 664
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	5 cut(s)	118, 283, 364, 376, 692
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	3 cut(s)	312, 492, 563
SfaNI	GCATC	1 cut(s)	349
Sse9I	AATT	4 cut(s)	12, 180, 372, 448
SsiI	CCGC	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	3 cut(s)	354, 454, 525
TaaI	ACNGT	2 cut(s)	398, 668
TaqI	TCGA	3 cut(s)	111, 286, 306
TasI	AATT	4 cut(s)	12, 180, 372, 448
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	507, 578
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	2 cut(s)	293, 437
Tsp45I	GTSAC	2 cut(s)	293, 437
TspDTI	ATGAA	4 cut(s)	186, 399, 459, 625
XagI	CCTNNNNNAGG	1 cut(s)	681
XceI	RCATGY	3 cut(s)	483, 554, 608
XmiI	GTMKAC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.