Prupe.7G003300_v2.0.a1

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001816
Physical Location & Seq
Forward (+)
366515 .. 370254
3740 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G003300.1

Sequence Viewer

Length: 801 bp
ATGGCAATTGCACGGACTGGAGTGTACGTCGACGACTATCTTGAATACGCAAGCACATTGCCTGCTGAGCTCCAGAGGCTCCTCAACACCATCCGAGAACTCGACGAACGCTCCCAATCCATGATACACCAGACGAGGCAGCAGACTAAGTACTGTTTGGGATTGTCTTCACAGAGCTCAAAGAAATGGAACAATAACCATAGCTATAATAACAATGAAGAAGATGAAGCGGCAATTGAGAAAATCCGAAAAGAAATCGAAGCAAATCAAGATAATGCATTGAGTCTGTGTACTGAGAAGGTTTTGTTGGCGCAACAAGCTTATGACCTGATAGATAGTCATGTAAAACGACTTGACGAGGATCTGAATCACTTTGCAGAAGATTTAAAGCAAGAAGGAAAAATACCACCCGATGAACCAGCAGTTCTTCCTCCATTACCTATAGTCCCTAAAAATGAAAAGCGCAAGCCTATGTATGTAACACCTCAATCAAAAAGGCTTGATTTTAGGGATAGGGACTGGGATCGAGAGCGCGATAGGGACTTTGAACTCATGCCTCCCCCAGGAAGCCATAAAAAGGACTATGCTGTCCCTGTTGATGTTGAGCAACCCATTGATCCAAATGAACCTACCTACTGCGTTTGCCATCAGGTCTCTTTTGGAGATATGATTGCCTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCATTATGCATGCGTTGGGCTGACACCAGAGACAAGATTCAAGGGAAAGTGGTATTGTCCAACATGCAGACTACAACCACAAAGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

267

Amino Acids

30.82

Weight (kDa)

5.12

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 534
AciI CCGC 1 cut(s) 230
AclWI GGATC 3 cut(s) 369, 531, 611
AfaI GTAC 3 cut(s) 26, 152, 292
AfiI CCNNNNNNNGG 2 cut(s) 563, 577
AgsI TTSAA 3 cut(s) 44, 548, 751
AjnI CCWGG 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 4 cut(s) 70, 177, 204, 320
AluI AGCT 4 cut(s) 70, 177, 204, 320
Alw21I GWGCWC 2 cut(s) 72, 179
Alw26I GTCTC 2 cut(s) 658, 734
AlwI GGATC 3 cut(s) 369, 531, 611
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 3 cut(s) 313, 465, 534
BanII GRGCYC 2 cut(s) 72, 179
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 72, 179
BbvI GCAGC 1 cut(s) 151
BccI CCATC 2 cut(s) 98, 654
BciT130I CCWGG 1 cut(s) 564
BcoDI GTCTC 2 cut(s) 658, 734
BfmI CTRYAG 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 699
BisI GCNGC 2 cut(s) 140, 231
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 141, 232
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 564
BmiI GGNNCC 2 cut(s) 80, 710
BmrFI CCNGG 1 cut(s) 564
BmrI ACTGGG 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 39, 56
Bpu1102I GCTNAGC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 562, 694
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 577
Bse1I ACTGG 2 cut(s) 22, 524
Bse3DI GCAATG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 562, 694
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 563, 577
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 57, 285
BseNI ACTGG 2 cut(s) 22, 524
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 534
BsiHKAI GWGCWC 2 cut(s) 72, 179
BslFI GGGAC 4 cut(s) 431, 530, 554, 575
BslI CCNNNNNNNGG 2 cut(s) 563, 577
BsmAI GTCTC 2 cut(s) 658, 734
BsmFI GGGAC 4 cut(s) 431, 530, 554, 575
Bso31I GGTCTC 1 cut(s) 658
Bsp1286I GDGCHC 2 cut(s) 72, 179
Bsp143I GATC 3 cut(s) 361, 523, 616
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 1 cut(s) 230
BspCNI CTCAG 2 cut(s) 58, 286
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 80, 710
BspPI GGATC 3 cut(s) 369, 531, 611
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 2 cut(s) 22, 524
BssECI CCNNGG 2 cut(s) 562, 694
BssMI GATC 3 cut(s) 361, 523, 616
BssT1I CCWWGG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 52, 63, 467, 721
BstDEI CTNAG 3 cut(s) 66, 147, 294
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 3 cut(s) 313, 465, 534
BstKTI GATC 3 cut(s) 364, 526, 619
BstMAI GTCTC 2 cut(s) 658, 734
BstMBI GATC 3 cut(s) 361, 523, 616
BstMWI GCNNNNNNNGC 4 cut(s) 67, 76, 317, 699
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 2 cut(s) 723, 777
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 4 cut(s) 52, 63, 467, 721
CfoI GCGC 3 cut(s) 313, 465, 534
Csp6I GTAC 3 cut(s) 25, 151, 291
CviAII CATG 5 cut(s) 121, 341, 553, 720, 774
CviJI RGCY 9 cut(s) 70, 79, 177, 204, 320, 469, 499, 570, 730
CviKI_1 RGCY 9 cut(s) 70, 79, 177, 204, 320, 469, 499, 570, 730
CviQI GTAC 3 cut(s) 25, 151, 291
DdeI CTNAG 3 cut(s) 66, 147, 294
DpnI GATC 3 cut(s) 363, 525, 618
DpnII GATC 3 cut(s) 361, 523, 616
DraI TTTAAA 1 cut(s) 387
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
Ecl136II GAGCTC 2 cut(s) 70, 177
Eco130I CCWWGG 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 72, 179
Eco31I GGTCTC 1 cut(s) 658
Eco53kI GAGCTC 2 cut(s) 70, 177
EcoICRI GAGCTC 2 cut(s) 70, 177
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 694
EcoT22I ATGCAT 2 cut(s) 280, 721
EcoT38I GRGCYC 2 cut(s) 72, 179
ErhI CCWWGG 1 cut(s) 694
FaeI CATG 5 cut(s) 124, 344, 556, 723, 777
FaqI GGGAC 4 cut(s) 431, 530, 554, 575
FatI CATG 5 cut(s) 120, 340, 552, 719, 773
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 140, 231
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 2 cut(s) 72, 179
Fsp4HI GCNGC 2 cut(s) 140, 231
GlaI GCGC 3 cut(s) 312, 464, 533
GluI GCNGC 2 cut(s) 140, 231
GsuI CTGGAG 2 cut(s) 39, 56
HhaI GCGC 3 cut(s) 313, 465, 534
Hin1II CATG 5 cut(s) 124, 344, 556, 723, 777
Hin6I GCGC 3 cut(s) 311, 463, 532
HinP1I GCGC 3 cut(s) 311, 463, 532
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 3 cut(s) 283, 367, 747
Hpy166II GTNNAC 3 cut(s) 25, 31, 291
Hpy188I TCNGA 3 cut(s) 95, 248, 366
Hpy188III TCNNGA 4 cut(s) 41, 73, 269, 527
Hpy8I GTNNAC 3 cut(s) 25, 31, 291
Hpy99I CGWCG 3 cut(s) 32, 35, 107
HpyAV CCTTC 2 cut(s) 292, 389
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 11, 278, 377, 719, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 76, 317, 699
HpyF3I CTNAG 3 cut(s) 66, 147, 294
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 5 cut(s) 124, 344, 556, 723, 777
HspAI GCGC 3 cut(s) 311, 463, 532
Kzo9I GATC 3 cut(s) 361, 523, 616
LmnI GCTCC 3 cut(s) 75, 84, 116
Lsp1109I GCAGC 1 cut(s) 151
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 478, 677
MalI GATC 3 cut(s) 363, 525, 618
MboI GATC 3 cut(s) 361, 523, 616
MboII GAAGA 5 cut(s) 159, 230, 233, 392, 419
MfeI CAATTG 2 cut(s) 6, 234
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 72, 179
MluCI AATT 3 cut(s) 6, 234, 688
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 794
MnlI CCTC 8 cut(s) 69, 92, 129, 352, 441, 495, 567, 692
Mph1103I ATGCAT 2 cut(s) 280, 721
MseI TTAA 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 2 cut(s) 6, 234
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 67, 76, 317, 699
NdeII GATC 3 cut(s) 361, 523, 616
NlaIII CATG 5 cut(s) 124, 344, 556, 723, 777
NlaIV GGNNCC 2 cut(s) 80, 710
NmuCI GTSAC 1 cut(s) 677
NsiI ATGCAT 2 cut(s) 280, 721
NspI RCATGY 2 cut(s) 723, 777
PaeI GCATGC 1 cut(s) 723
PfeI GAWTC 2 cut(s) 367, 747
PkrI GCNGC 2 cut(s) 141, 232
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Psp124BI GAGCTC 2 cut(s) 72, 179
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 80, 710
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 3 cut(s) 26, 152, 292
RsaNI GTAC 3 cut(s) 25, 151, 291
SacI GAGCTC 2 cut(s) 72, 179
SalI GTCGAC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 140, 231
Sau3AI GATC 3 cut(s) 361, 523, 616
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 72, 179
SfcI CTRYAG 1 cut(s) 441
SgrDI CGTCGACG 1 cut(s) 29
SphI GCATGC 1 cut(s) 723
Sse9I AATT 3 cut(s) 6, 234, 688
SsiI CCGC 1 cut(s) 230
SstI GAGCTC 2 cut(s) 72, 179
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 30
TaqI TCGA 4 cut(s) 30, 102, 258, 526
TasI AATT 3 cut(s) 6, 234, 688
TatI WGTACW 2 cut(s) 150, 290
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 367, 747
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 6 cut(s) 231, 240, 429, 471, 639, 699
TspGWI ACGGA 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 561
XceI RCATGY 2 cut(s) 723, 777
XmiI GTMKAC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 2 cut(s) 280, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.