pycom49g00180

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_49
OG0001816
Physical Location & Seq
Forward (+)
204602 .. 207237
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom49g00180.1

Sequence Viewer

Length: 798 bp
ATGGCAATTGCAAGGACCGGAGTGTACGTCGACGACTATCTTGAATACGCAAACACATTGCCTGCTGAGCTCCAGAGGCTCCTCAACACCATCCGAGAACTCGACGAACGCTCTCAATCCATGATACACCAGACGAGGCAGCAGACTAAGTTCTGTCTGGGATTGTCTTCACAGAGCTCAAAGAAATGGAACAATAATTATAACAACATTGAAGAAGATGAAGCCGCTATTGAGAAAATGCGGAAAGAAATCGAATCGAATCAGGATAGTGCGTTGAGTCTATGTACTGAGAAGGTTTTGTTGGCACAACAAGCTTACGACCTGATAGATAGTCATGTAAAACGATTGGATGAGGATCTGAATCACTTTGCAGAAGATTTGAAGCAAGAAGGTAAAATAGCACCAGATGAACCAGCAGTCCTTCCTCCATTACCTATTGTTCCTAAAAACGAAAAACGCAAGCCTGTTTATATAACACCTCAATCAAAAAGGCTTGATTATAGGGATAGGGACTGGGATCGAGAGCGCGATAGGGACTTTGAGCTCATGCCTCCCCCAGGGAGCCATAAAAAGGATTATGCTGTCCCCATTGATGCTGAGCAACCCATTGATCCAAACGAACCTACCTACTGCGTTTGCCATCAGGTCTCTTTTGGAGATATGATTGCCTGTGACAATGAAAATTGCCAAGGAGGTGAATGGTTCCATTACGCATGTGTTGGGTTGACACCCGAGACAAGATTCAAGGGAAAGTGGTACTGTCCAACATGCAGACTACAACCACAGAGTCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

266

Amino Acids

30.7

Weight (kDa)

5.05

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 9 - 122 2e-17 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 528
AciI CCGC 2 cut(s) 225, 241
AclWI GGATC 3 cut(s) 363, 525, 605
AfaI GTAC 3 cut(s) 26, 286, 758
AfiI CCNNNNNNNGG 2 cut(s) 557, 571
AgsI TTSAA 4 cut(s) 44, 212, 382, 745
AjnI CCWGG 1 cut(s) 556
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AloI GAACNNNNNNTCC 2 cut(s) 402, 434
AluBI AGCT 4 cut(s) 70, 177, 314, 544
AluI AGCT 4 cut(s) 70, 177, 314, 544
Alw21I GWGCWC 3 cut(s) 72, 179, 546
Alw26I GTCTC 2 cut(s) 652, 728
AlwI GGATC 3 cut(s) 363, 525, 605
Ama87I CYCGRG 1 cut(s) 731
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 707
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 1 cut(s) 15
BanII GRGCYC 3 cut(s) 72, 179, 546
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 3 cut(s) 72, 179, 546
BbvI GCAGC 1 cut(s) 151
BccI CCATC 2 cut(s) 98, 648
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 2 cut(s) 652, 728
BisI GCNGC 2 cut(s) 140, 225
BlpI GCTNAGC 2 cut(s) 66, 597
BlsI GCNGC 2 cut(s) 141, 226
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 3 cut(s) 80, 563, 704
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 56
Bpu1102I GCTNAGC 2 cut(s) 66, 597
BsaBI GATNNNNATC 2 cut(s) 354, 360
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 3 cut(s) 556, 557, 688
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 571
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 56
Bse8I GATNNNNATC 2 cut(s) 354, 360
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 3 cut(s) 556, 557, 688
BseGI GGATG 2 cut(s) 90, 355
BseJI GATNNNNATC 2 cut(s) 354, 360
BseLI CCNNNNNNNGG 2 cut(s) 557, 571
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 3 cut(s) 57, 279, 588
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 528
BsiHKAI GWGCWC 3 cut(s) 72, 179, 546
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 3 cut(s) 524, 548, 569
BslI CCNNNNNNNGG 2 cut(s) 557, 571
BsmAI GTCTC 2 cut(s) 652, 728
BsmFI GGGAC 3 cut(s) 524, 548, 569
Bso31I GGTCTC 1 cut(s) 652
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 3 cut(s) 72, 179, 546
Bsp143I GATC 3 cut(s) 355, 517, 610
Bsp1720I GCTNAGC 2 cut(s) 66, 597
BspACI CCGC 2 cut(s) 225, 241
BspCNI CTCAG 3 cut(s) 58, 280, 589
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 3 cut(s) 80, 563, 704
BspPI GGATC 3 cut(s) 363, 525, 605
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 3 cut(s) 556, 557, 688
BssMI GATC 3 cut(s) 355, 517, 610
BssT1I CCWWGG 1 cut(s) 688
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 761, 795
BstC8I GCNNGC 2 cut(s) 63, 461
BstDEI CTNAG 4 cut(s) 66, 147, 288, 597
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 90, 355
BstFNI CGCG 1 cut(s) 528
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 3 cut(s) 358, 520, 613
BstMAI GTCTC 2 cut(s) 652, 728
BstMBI GATC 3 cut(s) 355, 517, 610
BstMWI GCNNNNNNNGC 3 cut(s) 67, 76, 311
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 2 cut(s) 717, 771
BstSCI CCNGG 1 cut(s) 556
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BtsCI GGATG 2 cut(s) 90, 355
Cac8I GCNNGC 2 cut(s) 63, 461
CfoI GCGC 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 3 cut(s) 25, 285, 757
CviAII CATG 5 cut(s) 121, 335, 547, 714, 768
CviJI RGCY 9 cut(s) 70, 79, 177, 224, 314, 463, 493, 544, 564
CviKI_1 RGCY 9 cut(s) 70, 79, 177, 224, 314, 463, 493, 544, 564
CviQI GTAC 3 cut(s) 25, 285, 757
DdeI CTNAG 4 cut(s) 66, 147, 288, 597
DpnI GATC 3 cut(s) 357, 519, 612
DpnII GATC 3 cut(s) 355, 517, 610
Ecl136II GAGCTC 3 cut(s) 70, 177, 544
Eco130I CCWWGG 1 cut(s) 688
Eco24I GRGCYC 3 cut(s) 72, 179, 546
Eco31I GGTCTC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 3 cut(s) 70, 177, 544
Eco88I CYCGRG 1 cut(s) 731
EcoICRI GAGCTC 3 cut(s) 70, 177, 544
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 688
EcoT38I GRGCYC 3 cut(s) 72, 179, 546
ErhI CCWWGG 1 cut(s) 688
FaeI CATG 5 cut(s) 124, 338, 550, 717, 771
FaqI GGGAC 3 cut(s) 524, 548, 569
FatI CATG 5 cut(s) 120, 334, 546, 713, 767
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 140, 225
FokI GGATG 2 cut(s) 77, 362
FriOI GRGCYC 3 cut(s) 72, 179, 546
Fsp4HI GCNGC 2 cut(s) 140, 225
GlaI GCGC 1 cut(s) 527
GluI GCNGC 2 cut(s) 140, 225
GsuI CTGGAG 1 cut(s) 56
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 528
Hin1II CATG 5 cut(s) 124, 338, 550, 717, 771
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 3 cut(s) 31, 726, 791
HindII GTYRAC 3 cut(s) 31, 726, 791
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 6 cut(s) 254, 259, 277, 361, 741, 787
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 4 cut(s) 25, 31, 726, 791
Hpy188I TCNGA 2 cut(s) 95, 360
Hpy188III TCNNGA 4 cut(s) 41, 73, 263, 521
Hpy8I GTNNAC 4 cut(s) 25, 31, 726, 791
Hpy99I CGWCG 3 cut(s) 32, 35, 107
HpyAV CCTTC 3 cut(s) 286, 383, 431
HpyCH4III ACNGT 2 cut(s) 761, 795
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 11, 371, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 76, 311
HpyF3I CTNAG 4 cut(s) 66, 147, 288, 597
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 5 cut(s) 124, 338, 550, 717, 771
HspAI GCGC 1 cut(s) 526
Kzo9I GATC 3 cut(s) 355, 517, 610
LmnI GCTCC 3 cut(s) 75, 84, 561
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 583
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 671
MalI GATC 3 cut(s) 357, 519, 612
MboI GATC 3 cut(s) 355, 517, 610
MboII GAAGA 4 cut(s) 159, 224, 227, 386
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 3 cut(s) 72, 179, 546
MluCI AATT 3 cut(s) 6, 196, 682
MlyI GAGTC 2 cut(s) 286, 796
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 8 cut(s) 69, 92, 129, 346, 435, 489, 561, 686
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 558
MunI CAATTG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 3 cut(s) 67, 76, 311
NdeII GATC 3 cut(s) 355, 517, 610
NlaIII CATG 5 cut(s) 124, 338, 550, 717, 771
NlaIV GGNNCC 3 cut(s) 80, 563, 704
NmuCI GTSAC 1 cut(s) 671
NspI RCATGY 2 cut(s) 717, 771
PasI CCCWGGG 1 cut(s) 557
PfeI GAWTC 4 cut(s) 254, 259, 361, 741
PkrI GCNGC 2 cut(s) 141, 226
PleI GAGTC 2 cut(s) 285, 795
PpsI GAGTC 2 cut(s) 285, 795
PsiI TTATAA 1 cut(s) 201
Psp124BI GAGCTC 3 cut(s) 72, 179, 546
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 3 cut(s) 80, 563, 704
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 3 cut(s) 26, 286, 758
RsaNI GTAC 3 cut(s) 25, 285, 757
SacI GAGCTC 3 cut(s) 72, 179, 546
SalI GTCGAC 1 cut(s) 29
SatI GCNGC 2 cut(s) 140, 225
Sau3AI GATC 3 cut(s) 355, 517, 610
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 2 cut(s) 286, 796
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 3 cut(s) 72, 179, 546
SfaNI GCATC 1 cut(s) 583
SgrDI CGTCGACG 1 cut(s) 29
SinI GGWCC 1 cut(s) 15
Sse9I AATT 3 cut(s) 6, 196, 682
SsiI CCGC 2 cut(s) 225, 241
SstI GAGCTC 3 cut(s) 72, 179, 546
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 2 cut(s) 761, 795
TaiI ACGT 1 cut(s) 30
TaqI TCGA 5 cut(s) 30, 102, 252, 257, 520
TasI AATT 3 cut(s) 6, 196, 682
TatI WGTACW 1 cut(s) 284
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 4 cut(s) 254, 259, 361, 741
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 3 cut(s) 234, 423, 693
VpaK11BI GGWCC 1 cut(s) 15
XagI CCTNNNNNAGG 1 cut(s) 555
XceI RCATGY 2 cut(s) 717, 771
XmiI GTMKAC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.