FvH4_1g28050

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001816
Physical Location & Seq
Forward (+)
19897632 .. 19900761
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28050.t20

Sequence Viewer

Length: 729 bp
ATGGCAATCGCAAGGACTGGAGTATACGTGGACGACTATCTGGAATACGCAAGTACGTTGCCTGCTGAGCTGCAGAGGCTCCTCAATACTATTCGAGAACTTGACGAACGCTCTCAATCGATGATACACCAGACAAGGCAGCAGACGAAGCATTGCTTGGGATTCTCACAGAAATGGAACATGGAAGAAGACGAGGCCGCCATTGAAAAAATGCGCAAAGAAATCGAAGTCAATCAGGAGAATGCTGTCAGTCTCTGTACCGAGAAGATAGATAGTCATGTGAAACGTCTCGACGAGGATCTTAACCACTTTGCAGAAGATCTAAAGCAAGAAGGAAAAATATCACCCAATGAACCAGCAATTCTTCCTCCATTACCCATTGTGCCCAAAACTGAAAAGCGCAAGCCCATTTATGTAACACTTCAACCAAAAAGGTTTGATTATAGGGATAGGGAATGGGATCGAGAGCGTGACAGGGACTTCGAGCTCATGCCACCCCCAGGAAGCCACAAAAAGGAATATGCTATTCCCATGGATACTGATCAACCGATTGATCCAAATGAACCTACCTACTGTGTTTGCCATCAGGTGTCTTTTGGAGATATGATTGCCTGTGACAATGAGAATTGCCAAGGAGGCGAATGGTTTCATTACGCATGTGTTGGGCTCACACCAGAGACGAGATTCAAAGGAAAGTGGTATTGTCCAACATGCAGACAACAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

243

Amino Acids

28.32

Weight (kDa)

5.2

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 9 - 113 5.6e-19 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 215
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 198
AclWI GGATC 3 cut(s) 306, 468, 548
AfaI GTAC 2 cut(s) 55, 259
AfiI CCNNNNNNNGG 2 cut(s) 500, 514
AgsI TTSAA 3 cut(s) 206, 425, 688
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 70, 487
AluI AGCT 2 cut(s) 70, 487
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 3 cut(s) 257, 293, 671
AlwI GGATC 3 cut(s) 306, 468, 548
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 70, 139
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 2 cut(s) 216, 402
AsuHPI GGTGA 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 387
BanII GRGCYC 2 cut(s) 489, 669
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 57, 151
BccI CCATC 1 cut(s) 591
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 529
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 257, 293, 671
BfmI CTRYAG 1 cut(s) 71
BfuI GTATCC 1 cut(s) 529
BglI GCCNNNNNGGC 1 cut(s) 636
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 71, 140, 198
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 72, 141, 199
Bme1390I CCNGG 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 499, 531, 631
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 514
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 499, 531, 631
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 500, 514
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 2 cut(s) 57, 151
BshFI GGCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 489
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 2 cut(s) 500, 514
BsmAI GTCTC 3 cut(s) 257, 293, 671
BsmBI CGTCTC 2 cut(s) 293, 671
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 387, 489, 669
Bsp143I GATC 5 cut(s) 298, 319, 460, 541, 553
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 80
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 306, 468, 548
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 499, 531, 631
BssMI GATC 5 cut(s) 298, 319, 460, 541, 553
BssNAI GTATAC 1 cut(s) 25
BssT1I CCWWGG 2 cut(s) 531, 631
Bst1107I GTATAC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 63, 404
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 531
BstHHI GCGC 2 cut(s) 216, 402
BstKTI GATC 5 cut(s) 301, 322, 463, 544, 556
BstMAI GTCTC 3 cut(s) 257, 293, 671
BstMBI GATC 5 cut(s) 298, 319, 460, 541, 553
BstMWI GCNNNNNNNGC 4 cut(s) 67, 76, 148, 636
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 2 cut(s) 660, 714
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 57, 151
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 2 cut(s) 298, 319
BstYI RGATCY 2 cut(s) 298, 319
BstZ17I GTATAC 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 119
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 63, 404
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 2 cut(s) 216, 402
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 2 cut(s) 54, 258
CviAII CATG 6 cut(s) 181, 278, 490, 532, 657, 711
CviJI RGCY 8 cut(s) 70, 79, 197, 406, 487, 507, 667, 724
CviKI_1 RGCY 8 cut(s) 70, 79, 197, 406, 487, 507, 667, 724
CviQI GTAC 2 cut(s) 54, 258
DdeI CTNAG 1 cut(s) 66
DpnI GATC 5 cut(s) 300, 321, 462, 543, 555
DpnII GATC 5 cut(s) 298, 319, 460, 541, 553
Ecl136II GAGCTC 1 cut(s) 487
Eco130I CCWWGG 2 cut(s) 531, 631
Eco24I GRGCYC 2 cut(s) 489, 669
Eco53kI GAGCTC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 531, 631
EcoT38I GRGCYC 2 cut(s) 489, 669
ErhI CCWWGG 2 cut(s) 531, 631
Esp3I CGTCTC 2 cut(s) 293, 671
FaeI CATG 6 cut(s) 184, 281, 493, 535, 660, 714
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 491
FatI CATG 6 cut(s) 180, 277, 489, 531, 656, 710
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 71, 140, 198
FriOI GRGCYC 2 cut(s) 489, 669
Fsp4HI GCNGC 3 cut(s) 71, 140, 198
FspI TGCGCA 1 cut(s) 215
GlaI GCGC 2 cut(s) 215, 401
GluI GCNGC 3 cut(s) 71, 140, 198
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 197
HhaI GCGC 2 cut(s) 216, 402
Hin1II CATG 6 cut(s) 184, 281, 493, 535, 660, 714
Hin6I GCGC 2 cut(s) 214, 400
HinP1I GCGC 2 cut(s) 214, 400
HinfI GANTC 2 cut(s) 162, 684
HphI GGTGA 1 cut(s) 336
Hpy166II GTNNAC 2 cut(s) 25, 31
Hpy188III TCNNGA 5 cut(s) 41, 95, 236, 290, 464
Hpy8I GTNNAC 2 cut(s) 25, 31
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 3 cut(s) 27, 56, 286
HpyCH4V TGCA 3 cut(s) 73, 314, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 76, 148, 636
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 3 cut(s) 27, 56, 286
Hsp92II CATG 6 cut(s) 184, 281, 493, 535, 660, 714
HspAI GCGC 2 cut(s) 214, 400
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 5 cut(s) 298, 319, 460, 541, 553
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 2 cut(s) 57, 151
MaeII ACGT 3 cut(s) 27, 56, 286
MaeIII GTNAC 3 cut(s) 415, 470, 614
MalI GATC 5 cut(s) 300, 321, 462, 543, 555
MboI GATC 5 cut(s) 298, 319, 460, 541, 553
MboII GAAGA 5 cut(s) 197, 200, 277, 329, 356
MflI RGATCY 2 cut(s) 298, 319
MhlI GDGCHC 3 cut(s) 387, 489, 669
MluCI AATT 2 cut(s) 360, 625
MnlI CCTC 6 cut(s) 69, 92, 187, 289, 378, 629
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 4 cut(s) 67, 76, 148, 636
NcoI CCATGG 1 cut(s) 531
NdeII GATC 5 cut(s) 298, 319, 460, 541, 553
NlaIII CATG 6 cut(s) 184, 281, 493, 535, 660, 714
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 470, 614
NsbI TGCGCA 1 cut(s) 215
NspI RCATGY 2 cut(s) 660, 714
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 2 cut(s) 162, 684
PkrI GCNGC 3 cut(s) 72, 141, 199
Ppu21I YACGTR 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 1 cut(s) 80
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 2 cut(s) 298, 319
RsaI GTAC 2 cut(s) 55, 259
RsaNI GTAC 2 cut(s) 54, 258
RseI CAYNNNNRTG 1 cut(s) 172
SacI GAGCTC 1 cut(s) 489
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 71, 140, 198
Sau3AI GATC 5 cut(s) 298, 319, 460, 541, 553
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 3 cut(s) 387, 489, 669
SetI ASST 9 cut(s) 30, 59, 72, 289, 437, 489, 568, 572, 591
SfcI CTRYAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 172
Sse9I AATT 2 cut(s) 360, 625
SsiI CCGC 1 cut(s) 198
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 2 cut(s) 531, 631
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 3 cut(s) 30, 59, 289
TaqI TCGA 6 cut(s) 94, 119, 225, 291, 463, 483
TasI AATT 2 cut(s) 360, 625
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 162, 684
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 2 cut(s) 470, 614
TseI GCWGC 2 cut(s) 70, 139
Tsp45I GTSAC 2 cut(s) 470, 614
TspDTI ATGAA 3 cut(s) 366, 576, 638
XceI RCATGY 2 cut(s) 660, 714
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.