FvH4_7g02040

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001816
Physical Location & Seq
Reverse (-)
2400704 .. 2405753
5050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02040.t3

Sequence Viewer

Length: 837 bp
ATGGTAATCGCAAGGACCGGAGTGTATGTGGATGACTATCTCGAATACGCAAGTACGTTGCCTGCTGAGCTGCAGAGGCTACTCAATACTATTCGAGAACTTGAAGAACGCTCTCAAACGATGATACACCAGACGAGGCAGCAGACGAAGCAGTGCTTGGGATTGTCAAAGAAATGGAACATGGAAGAAGATGAGGCCGCCATTGACAAACTGTTGAAAGAAATCGAATCCAATCAGGAGAACGCTGTCAGTCTCTGTACTGAGAAGGTTTTGCTCGCTAAACAAGCTTATGACCTGATAGATAGTCATGTGAAACGGCTCGACGAGGATCTGCACCACTTTGCAGAAGATTTAAAGCAAGAAGGAAAAATATCACCCGATGAACCAGCAATTCTTCCTCCATTACCCATTGTCCCCAAAACTGAAAAACGGAAGCCCATTTATGTAACTCCTCAATCAAAAAGGTTTGATTATAGAGATAGGGAATGGGATCGAGAGCGCGACAGGGACTTCGAGCTCATGCCACCCCCAGGAAGCTACAAAAAGGAATATGCTATTCCTATGGATGCTGATCAACCAATTGATCCGAATGAACCTACCTATTGTGTTTGCCATCAGGTGTCTTTTGGAGATATGATTGCCTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTTCATTACGCATGTGTTGGGCTCACACCAGAGACGAGATTCAAGGGGAAGTGGTATTGTCCAACATGCAGACAACAACCACAAGGTTATAGCTACTTAAACTCGAGTAAAATCCGTAATTTCTTGAACCCTTGGCCTCTTGACATATGGTTTTCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

279

Amino Acids

32.48

Weight (kDa)

5.15

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 9 - 113 9.1e-19 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 501
AciI CCGC 1 cut(s) 198
AclWI GGATC 3 cut(s) 336, 498, 578
AfaI GTAC 2 cut(s) 55, 259
AfiI CCNNNNNNNGG 1 cut(s) 530
AgsI TTSAA 4 cut(s) 104, 217, 718, 802
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 5 cut(s) 70, 287, 517, 537, 768
AluI AGCT 5 cut(s) 70, 287, 517, 537, 768
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 2 cut(s) 257, 701
AlwI GGATC 3 cut(s) 336, 498, 578
AlwNI CAGNNNCTG 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 2 cut(s) 195, 809
ApeKI GCWGC 2 cut(s) 70, 139
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 15
BanII GRGCYC 2 cut(s) 519, 699
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 57, 151
BccI CCATC 1 cut(s) 621
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 531
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 2 cut(s) 257, 701
BfmI CTRYAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 666
BisI GCNGC 3 cut(s) 71, 140, 198
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 72, 141, 199
Bme1390I CCNGG 1 cut(s) 531
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 531
BmsI GCATC 1 cut(s) 556
Bpu1102I GCTNAGC 1 cut(s) 66
BsaBI GATNNNNATC 2 cut(s) 36, 570
BsaJI CCNNGG 3 cut(s) 529, 661, 806
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse8I GATNNNNATC 2 cut(s) 36, 570
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 529, 661, 806
BseGI GGATG 2 cut(s) 37, 571
BseJI GATNNNNATC 2 cut(s) 36, 570
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMII CTCAG 2 cut(s) 57, 252
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 2 cut(s) 57, 151
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 197, 811
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 398, 521
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 257, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 398, 521
BsnI GGCC 2 cut(s) 197, 811
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 2 cut(s) 519, 699
Bsp143I GATC 4 cut(s) 328, 490, 571, 583
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 197, 811
BspCNI CTCAG 2 cut(s) 58, 253
BspFNI CGCG 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 336, 498, 578
BssECI CCNNGG 3 cut(s) 529, 661, 806
BssMI GATC 4 cut(s) 328, 490, 571, 583
BssT1I CCWWGG 2 cut(s) 661, 806
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 63, 276
BstDEI CTNAG 2 cut(s) 66, 261
BstF5I GGATG 2 cut(s) 37, 571
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 4 cut(s) 331, 493, 574, 586
BstMAI GTCTC 2 cut(s) 257, 701
BstMBI GATC 4 cut(s) 328, 490, 571, 583
BstMWI GCNNNNNNNGC 5 cut(s) 67, 76, 148, 284, 666
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 2 cut(s) 690, 744
BstSCI CCNGG 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 71
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 57, 151
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 2 cut(s) 197, 811
BtsCI GGATG 2 cut(s) 37, 571
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 63, 276
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 54, 258
CviAII CATG 5 cut(s) 181, 308, 520, 687, 741
CviQI GTAC 2 cut(s) 54, 258
DdeI CTNAG 2 cut(s) 66, 261
DpnI GATC 4 cut(s) 330, 492, 573, 585
DpnII GATC 4 cut(s) 328, 490, 571, 583
DraI TTTAAA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 661, 806
Eco24I GRGCYC 2 cut(s) 519, 699
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 661, 806
EcoT38I GRGCYC 2 cut(s) 519, 699
ErhI CCWWGG 2 cut(s) 661, 806
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 5 cut(s) 184, 311, 523, 690, 744
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 398, 521
FatI CATG 5 cut(s) 180, 307, 519, 686, 740
FauNDI CATATG 1 cut(s) 821
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 3 cut(s) 71, 140, 198
FokI GGATG 2 cut(s) 44, 578
FriOI GRGCYC 2 cut(s) 519, 699
Fsp4HI GCNGC 3 cut(s) 71, 140, 198
GlaI GCGC 1 cut(s) 500
GluI GCNGC 3 cut(s) 71, 140, 198
HaeIII GGCC 2 cut(s) 197, 811
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 501
Hin1II CATG 5 cut(s) 184, 311, 523, 690, 744
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 227, 714
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 366
Hpy188I TCNGA 1 cut(s) 588
Hpy188III TCNNGA 6 cut(s) 41, 95, 236, 494, 799, 815
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 259, 356
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 73, 334, 344, 744
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 76, 148, 284, 666
HpyF3I CTNAG 2 cut(s) 66, 261
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 5 cut(s) 184, 311, 523, 690, 744
HspAI GCGC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 328, 490, 571, 583
Lsp1109I GCAGC 2 cut(s) 57, 151
LweI GCATC 1 cut(s) 556
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 445, 644
MalI GATC 4 cut(s) 330, 492, 573, 585
MboI GATC 4 cut(s) 328, 490, 571, 583
MboII GAAGA 5 cut(s) 116, 197, 200, 359, 386
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 519, 699
MluCI AATT 4 cut(s) 390, 579, 655, 793
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 8 cut(s) 69, 129, 187, 319, 408, 462, 659, 822
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 2 cut(s) 353, 773
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 531
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 531
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 5 cut(s) 67, 76, 148, 284, 666
NdeI CATATG 1 cut(s) 821
NdeII GATC 4 cut(s) 328, 490, 571, 583
NlaIII CATG 5 cut(s) 184, 311, 523, 690, 744
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 2 cut(s) 690, 744
PaeR7I CTCGAG 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 227, 714
PkrI GCNGC 3 cut(s) 72, 141, 199
Psp124BI GAGCTC 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspPI GGNCC 1 cut(s) 15
PspXI VCTCGAGB 1 cut(s) 778
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 2 cut(s) 55, 259
RsaNI GTAC 2 cut(s) 54, 258
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 2 cut(s) 353, 773
SatI GCNGC 3 cut(s) 71, 140, 198
Sau3AI GATC 4 cut(s) 328, 490, 571, 583
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 531
SduI GDGCHC 2 cut(s) 519, 699
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 778
SinI GGWCC 1 cut(s) 15
SlaI CTCGAG 1 cut(s) 778
SmlI CTYRAG 1 cut(s) 778
SmoI CTYRAG 1 cut(s) 778
Sse9I AATT 4 cut(s) 390, 579, 655, 793
SsiI CCGC 1 cut(s) 198
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 1 cut(s) 529
StyI CCWWGG 2 cut(s) 661, 806
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 59
TaqI TCGA 7 cut(s) 42, 94, 225, 321, 493, 513, 779
TasI AATT 4 cut(s) 390, 579, 655, 793
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 227, 714
Tru1I TTAA 2 cut(s) 353, 773
Tru9I TTAA 2 cut(s) 353, 773
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 2 cut(s) 70, 139
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 4 cut(s) 396, 606, 666, 668
TspGWI ACGGA 2 cut(s) 445, 779
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 2 cut(s) 690, 744
XhoI CTCGAG 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.