RchiOBHm_Chr3g0497201

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001816
Physical Location & Seq
Reverse (-)
48878533 .. 48881570
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45941

Sequence Viewer

Length: 768 bp
ATGGCAATCGCCAGGACGGGAGTGTACGTAGACGACTATCTTGAATACGCAAGTACGTTGCCTGCTGAGCTGCAGAGGCTTCTGAACACAATTCGAGAACTGGACGAACGCTCTCAATCGATGATACACCAGACGAGGCAGCAGACCAAGCACTGCTTGGGATTGTCAAAGAAATGGAACAGCGAAGAAGATGAGGCCTCCATTGACAAAATGCGTAAAGAAATTGAAGCCAATCAGGAGAATGCAGTCAGTCTCTGTACTGAGAAGGTTTTGCTCGCAAAACAAGCTTATGACCTGATAGATAGTCATGTGAAACGACTCGACGAGGATCTGAACCACTTTGCAGAAGATTTAAAGCAAGAAGGAAAAATATCACCCGATGAACCAGCAATTCTTCCTCCATTACCCATAGTAGTCCCCAAAACTGAAAAACGAAAGCCCATTTATGGAACACCTCAATCAAAAAGGTTTGATTATAGGGATAGGGAATGGGATCGAGAGCGTGACAGGGACTTTGAGCTCATGCCGCCCCCAGGAAGCCACAAAAAGGAATATGCTATTCCCATGGATGCTGATCAACCAATTGATCCAAATGAACCTACCTACTGTGTTTGCCATCAGGTGTCTTTTGGAGATATGATTGCCTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCATTACGCATGTGTTGGGCTCACACCAGAGACGAGATTCAAGGGAAAGTGGTATTGTCCAACATGCAGACTACAACCACAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

255

Amino Acids

29.5

Weight (kDa)

5.2

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 9 - 113 9.1e-20 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 527
AclWI GGATC 3 cut(s) 336, 501, 581
AfaI GTAC 3 cut(s) 26, 55, 259
AfiI CCNNNNNNNGG 3 cut(s) 446, 533, 547
AgsI TTSAA 3 cut(s) 44, 227, 721
AjnI CCWGG 2 cut(s) 11, 532
AluBI AGCT 3 cut(s) 70, 287, 520
AluI AGCT 3 cut(s) 70, 287, 520
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 257, 704
AlwI GGATC 3 cut(s) 336, 501, 581
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 70, 139
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AsuHPI GGTGA 1 cut(s) 366
BanII GRGCYC 2 cut(s) 522, 702
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 2 cut(s) 57, 151
BccI CCATC 1 cut(s) 624
BciT130I CCWGG 2 cut(s) 13, 534
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 257, 704
BfmI CTRYAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 669
BisI GCNGC 3 cut(s) 71, 140, 527
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 72, 141, 528
Bme1390I CCNGG 2 cut(s) 13, 534
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 2 cut(s) 13, 534
BmsI GCATC 1 cut(s) 559
Bpu1102I GCTNAGC 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 532, 564, 664
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 533, 547
Bse1I ACTGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 2 cut(s) 13, 534
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 532, 564, 664
BseGI GGATG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 3 cut(s) 446, 533, 547
BseMII CTCAG 2 cut(s) 57, 252
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 57, 151
BshFI GGCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 522
BslFI GGGAC 2 cut(s) 401, 524
BslI CCNNNNNNNGG 3 cut(s) 446, 533, 547
BsmAI GTCTC 2 cut(s) 257, 704
BsmBI CGTCTC 1 cut(s) 704
BsmFI GGGAC 2 cut(s) 401, 524
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 522, 702
Bsp143I GATC 4 cut(s) 328, 493, 574, 586
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 1 cut(s) 527
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 58, 253
BspDI ATCGAT 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 680
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 336, 501, 581
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 532, 564, 664
BssMI GATC 4 cut(s) 328, 493, 574, 586
BssT1I CCWWGG 2 cut(s) 564, 664
Bst2UI CCWGG 2 cut(s) 13, 534
Bst4CI ACNGT 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 63, 276
BstDEI CTNAG 2 cut(s) 66, 261
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 574
BstKTI GATC 4 cut(s) 331, 496, 577, 589
BstMAI GTCTC 2 cut(s) 257, 704
BstMBI GATC 4 cut(s) 328, 493, 574, 586
BstMWI GCNNNNNNNGC 6 cut(s) 67, 76, 148, 284, 526, 669
BstNI CCWGG 2 cut(s) 13, 534
BstNSI RCATGY 2 cut(s) 693, 747
BstSCI CCNGG 2 cut(s) 11, 532
BstSFI CTRYAG 1 cut(s) 71
BstSNI TACGTA 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 57, 151
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 119
BsuRI GGCC 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 63, 276
CaiI CAGNNNCTG 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 3 cut(s) 25, 54, 258
CviAII CATG 5 cut(s) 308, 523, 565, 690, 744
CviJI RGCY 9 cut(s) 70, 79, 197, 230, 287, 439, 520, 540, 700
CviKI_1 RGCY 9 cut(s) 70, 79, 197, 230, 287, 439, 520, 540, 700
CviQI GTAC 3 cut(s) 25, 54, 258
DdeI CTNAG 2 cut(s) 66, 261
DpnI GATC 4 cut(s) 330, 495, 576, 588
DpnII GATC 4 cut(s) 328, 493, 574, 586
DraI TTTAAA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 520
Eco105I TACGTA 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 564, 664
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 522, 702
Eco53kI GAGCTC 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 11, 532
EcoT14I CCWWGG 2 cut(s) 564, 664
EcoT38I GRGCYC 2 cut(s) 522, 702
ErhI CCWWGG 2 cut(s) 564, 664
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 5 cut(s) 311, 526, 568, 693, 747
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 401, 524
FatI CATG 5 cut(s) 307, 522, 564, 689, 743
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 71, 140, 527
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 2 cut(s) 522, 702
Fsp4HI GCNGC 3 cut(s) 71, 140, 527
GluI GCNGC 3 cut(s) 71, 140, 527
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 5 cut(s) 311, 526, 568, 693, 747
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 318, 717
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 2 cut(s) 25, 31
Hpy188I TCNGA 2 cut(s) 84, 333
Hpy188III TCNNGA 4 cut(s) 41, 95, 236, 497
Hpy8I GTNNAC 2 cut(s) 25, 31
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 259, 356
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 27, 56
HpyCH4V TGCA 4 cut(s) 73, 245, 344, 747
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 76, 148, 284, 526, 669
HpyF3I CTNAG 2 cut(s) 66, 261
HpySE526I ACGT 2 cut(s) 27, 56
Hsp92II CATG 5 cut(s) 311, 526, 568, 693, 747
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 4 cut(s) 328, 493, 574, 586
Lsp1109I GCAGC 2 cut(s) 57, 151
LweI GCATC 1 cut(s) 559
MaeII ACGT 2 cut(s) 27, 56
MaeIII GTNAC 2 cut(s) 503, 647
MalI GATC 4 cut(s) 330, 495, 576, 588
MboI GATC 4 cut(s) 328, 493, 574, 586
MboII GAAGA 4 cut(s) 197, 200, 359, 386
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 522, 702
MluCI AATT 5 cut(s) 90, 222, 390, 582, 658
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 764
MnlI CCTC 8 cut(s) 69, 129, 187, 208, 319, 408, 465, 662
MseI TTAA 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 13, 534
MunI CAATTG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 13, 534
MwoI GCNNNNNNNGC 6 cut(s) 67, 76, 148, 284, 526, 669
NcoI CCATGG 1 cut(s) 564
NdeII GATC 4 cut(s) 328, 493, 574, 586
NlaIII CATG 5 cut(s) 311, 526, 568, 693, 747
NlaIV GGNNCC 1 cut(s) 680
NmuCI GTSAC 2 cut(s) 503, 647
NspI RCATGY 2 cut(s) 693, 747
PceI AGGCCT 1 cut(s) 197
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 717
PkrI GCNGC 3 cut(s) 72, 141, 528
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Ppu21I YACGTR 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 11, 532
PspGI CCWGG 2 cut(s) 11, 532
PspN4I GGNNCC 1 cut(s) 680
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 3 cut(s) 26, 55, 259
RsaNI GTAC 3 cut(s) 25, 54, 258
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 3 cut(s) 71, 140, 527
Sau3AI GATC 4 cut(s) 328, 493, 574, 586
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 13, 534
SduI GDGCHC 2 cut(s) 522, 702
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 1 cut(s) 71
SnaBI TACGTA 1 cut(s) 28
Sse9I AATT 5 cut(s) 90, 222, 390, 582, 658
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 1 cut(s) 527
SstI GAGCTC 1 cut(s) 522
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 11, 532
StyI CCWWGG 2 cut(s) 564, 664
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 30, 59
TaqI TCGA 4 cut(s) 94, 119, 321, 496
TasI AATT 5 cut(s) 90, 222, 390, 582, 658
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 2 cut(s) 503, 647
TseI GCWGC 2 cut(s) 70, 139
Tsp45I GTSAC 2 cut(s) 503, 647
TspDTI ATGAA 3 cut(s) 396, 609, 669
TspRI CASTG 1 cut(s) 158
XceI RCATGY 2 cut(s) 693, 747
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.