Rw3G029460

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001816
Physical Location & Seq
Reverse (-)
45348357 .. 45351103
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029460.1

Sequence Viewer

Length: 651 bp
ATGATACACCAGACGAGGCAGCAGACCAAGCACTGCTTGGGATTGTCAAAGAAATGGAACAGCGAAGAAGATGAGGCCTCCATTGACAAAATGCGTAGAGAAATTGAAGCCAATCAGGAGAATGCAGTCAGTCTCTGTACTGAGAAGGTTTTGCTCGCAAAACAAGCTTATGACCTGATAGATAGTCATGTGAAACGACTCGACGAGGATCTGAACCACTTTGCAGAAGATTTAAAGCAAGAAGGAAAAATATCACCCGATGAACCAGCAATTCTTCCTCCATTACCCATAGTAGTCCCCAAAACTGAAAAACGAAAGCCCATTTATGGAACACCTCAATCAAAAAGGTTTGATTATAGGGATAGGGAATGGGATCGAGAGCGTGACAGGGACTTCGAGCTCATGCCGCCCCCAGGAAGCCACAAAAAGGAATATGCTATTCCCATGGATGCTGATCAACCAATTGATCCAAATGAACCTACCTACTGTGTTTGCCATCAGGTGTCTTTTGGAGATATGATTGCCTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCATTACGCATGTGTTGGGCTCACACCAGAGACGAGATTCAAGGGAAAGTGGTATTGTCCAACATGCAGACTACAACCACAAGGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

216

Amino Acids

25.08

Weight (kDa)

5.44

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 6 - 73 6.8e-09 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 407
AclWI GGATC 3 cut(s) 216, 381, 461
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 326, 413, 427
AgsI TTSAA 2 cut(s) 107, 601
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 2 cut(s) 167, 400
AluI AGCT 2 cut(s) 167, 400
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 137, 584
AlwI GGATC 3 cut(s) 216, 381, 461
AlwNI CAGNNNCTG 1 cut(s) 135
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AsuHPI GGTGA 1 cut(s) 246
BanII GRGCYC 2 cut(s) 402, 582
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 504
BciT130I CCWGG 1 cut(s) 414
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 137, 584
BglI GCCNNNNNGGC 1 cut(s) 549
BisI GCNGC 2 cut(s) 20, 407
BlsI GCNGC 2 cut(s) 21, 408
Bme1390I CCNGG 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 412, 444, 544
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 413, 427
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 3 cut(s) 412, 444, 544
BseGI GGATG 1 cut(s) 454
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 3 cut(s) 326, 413, 427
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 402
BslFI GGGAC 2 cut(s) 281, 404
BslI CCNNNNNNNGG 3 cut(s) 326, 413, 427
BsmAI GTCTC 2 cut(s) 137, 584
BsmBI CGTCTC 1 cut(s) 584
BsmFI GGGAC 2 cut(s) 281, 404
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 402, 582
Bsp143I GATC 4 cut(s) 208, 373, 454, 466
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 560
BspPI GGATC 3 cut(s) 216, 381, 461
BssECI CCNNGG 3 cut(s) 412, 444, 544
BssMI GATC 4 cut(s) 208, 373, 454, 466
BssT1I CCWWGG 2 cut(s) 444, 544
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 454
BstKTI GATC 4 cut(s) 211, 376, 457, 469
BstMAI GTCTC 2 cut(s) 137, 584
BstMBI GATC 4 cut(s) 208, 373, 454, 466
BstMWI GCNNNNNNNGC 4 cut(s) 28, 164, 406, 549
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 2 cut(s) 573, 627
BstSCI CCNGG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 135
Csp6I GTAC 1 cut(s) 138
CviAII CATG 5 cut(s) 188, 403, 445, 570, 624
CviJI RGCY 7 cut(s) 77, 110, 167, 319, 400, 420, 580
CviKI_1 RGCY 7 cut(s) 77, 110, 167, 319, 400, 420, 580
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 141
DpnI GATC 4 cut(s) 210, 375, 456, 468
DpnII GATC 4 cut(s) 208, 373, 454, 466
DraI TTTAAA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 444, 544
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 402, 582
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 2 cut(s) 444, 544
EcoT38I GRGCYC 2 cut(s) 402, 582
ErhI CCWWGG 2 cut(s) 444, 544
Esp3I CGTCTC 1 cut(s) 584
FaeI CATG 5 cut(s) 191, 406, 448, 573, 627
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 281, 404
FatI CATG 5 cut(s) 187, 402, 444, 569, 623
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 20, 407
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 2 cut(s) 402, 582
Fsp4HI GCNGC 2 cut(s) 20, 407
GluI GCNGC 2 cut(s) 20, 407
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 5 cut(s) 191, 406, 448, 573, 627
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 198, 597
HphI GGTGA 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 116, 377
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 139, 236
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 125, 224, 627
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 164, 406, 549
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 5 cut(s) 191, 406, 448, 573, 627
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 208, 373, 454, 466
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 383, 527
MalI GATC 4 cut(s) 210, 375, 456, 468
MboI GATC 4 cut(s) 208, 373, 454, 466
MboII GAAGA 4 cut(s) 77, 80, 239, 266
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 402, 582
MluCI AATT 4 cut(s) 102, 270, 462, 538
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 7 cut(s) 9, 67, 88, 199, 288, 345, 542
MseI TTAA 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 4 cut(s) 28, 164, 406, 549
NcoI CCATGG 1 cut(s) 444
NdeII GATC 4 cut(s) 208, 373, 454, 466
NlaIII CATG 5 cut(s) 191, 406, 448, 573, 627
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 2 cut(s) 383, 527
NspI RCATGY 2 cut(s) 573, 627
PceI AGGCCT 1 cut(s) 77
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 597
PkrI GCNGC 2 cut(s) 21, 408
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 560
PstNI CAGNNNCTG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 20, 407
Sau3AI GATC 4 cut(s) 208, 373, 454, 466
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 2 cut(s) 402, 582
SfaNI GCATC 1 cut(s) 439
Sse9I AATT 4 cut(s) 102, 270, 462, 538
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 1 cut(s) 407
SstI GAGCTC 1 cut(s) 402
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 2 cut(s) 444, 544
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 3 cut(s) 201, 376, 396
TasI AATT 4 cut(s) 102, 270, 462, 538
TatI WGTACW 1 cut(s) 137
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 2 cut(s) 383, 527
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 2 cut(s) 383, 527
TspDTI ATGAA 3 cut(s) 276, 489, 549
TspRI CASTG 1 cut(s) 38
XceI RCATGY 2 cut(s) 573, 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.