RLG00000022471

PHD finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001816
Physical Location & Seq
Forward (+)
1162166 .. 1164987
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022471

Sequence Viewer

Length: 765 bp
ATGGCAATCGCCAGGACTGGAGTGTACGTAGACGACTATCTTGAATACGCAAGTACGTTGCCTGCTGAGCTGCAGAGGCTTCTGAACACTATTCGAGAACTGGACGAACGCTCTCAATCGATGATACACCAGACGAGGCAGCAGACCAAGCACTGCTTGGGATTGTCAAGGAAATGGAACAGCGAAGAAGATGAGGCCTCCATTGACAAAATGCGTAAAGAAATTGAAGCCAATCAGGAGAATGCAGTCAGTCTCTGTACTGAGAAGGTTTTGCTCGCAAAACAAGCTTATGACCTGATAGATAGTCATGTGAAACGACTCGACGAGGATCTGAACCACTTTGCAGAAGATTTAAAGCAAGAAGGAAAAATATCACCCAATGAACCAGCAATTCTTCCTCCATTACCCATTGTCCCCAAAACTGAAAAACGAAAGCCCATTTATGGAACACCTCAATCAAAAAGGTTTGATTATAGGGATAGGGAATGGGATCGTGAGCGTGACAGGGACTTCGAGCTCATGCCACCCCCAGGAAGCCACAAAAAGGAATATGCTATTCCCATGGATGCTGATCAACCAATTGATCCAAATGAACCTACCTACTGTGTTTGCCATCAGGTGTCTTTTGGAGATATGATTGCTTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCATTACGCATGTGTTGGGCTCACACCAGAGACGAGATTCAAGGGAAAGTGGTATTGTCCAACATGCAGACTACAACCACAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING PHD

Protein Analysis

255

Amino Acids

29.43

Weight (kDa)

5.28

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 9 - 113 9.8e-20 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AclWI GGATC 3 cut(s) 336, 498, 578
AfaI GTAC 3 cut(s) 26, 55, 259
AfiI CCNNNNNNNGG 3 cut(s) 443, 530, 544
AgsI TTSAA 3 cut(s) 44, 227, 718
AjnI CCWGG 2 cut(s) 11, 529
AluBI AGCT 3 cut(s) 70, 287, 517
AluI AGCT 3 cut(s) 70, 287, 517
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 2 cut(s) 257, 701
AlwI GGATC 3 cut(s) 336, 498, 578
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 70, 139
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AsuHPI GGTGA 1 cut(s) 366
BanII GRGCYC 2 cut(s) 519, 699
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 57, 151
BccI CCATC 1 cut(s) 621
BciT130I CCWGG 2 cut(s) 13, 531
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 2 cut(s) 257, 701
BfmI CTRYAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 666
BisI GCNGC 2 cut(s) 71, 140
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 72, 141
Bme1390I CCNGG 2 cut(s) 13, 531
BmiI GGNNCC 1 cut(s) 677
BmrFI CCNGG 2 cut(s) 13, 531
BmsI GCATC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 529, 561, 661
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 530, 544
Bse1I ACTGG 2 cut(s) 22, 105
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 2 cut(s) 13, 531
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 529, 561, 661
BseGI GGATG 1 cut(s) 571
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 3 cut(s) 443, 530, 544
BseMII CTCAG 2 cut(s) 57, 252
BseNI ACTGG 2 cut(s) 22, 105
BseXI GCAGC 2 cut(s) 57, 151
BshFI GGCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 519
BslFI GGGAC 2 cut(s) 398, 521
BslI CCNNNNNNNGG 3 cut(s) 443, 530, 544
BsmAI GTCTC 2 cut(s) 257, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 398, 521
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 519, 699
Bsp143I GATC 4 cut(s) 328, 490, 571, 583
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 561
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 58, 253
BspDI ATCGAT 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 677
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 336, 498, 578
BsrI ACTGG 2 cut(s) 22, 105
BssECI CCNNGG 3 cut(s) 529, 561, 661
BssMI GATC 4 cut(s) 328, 490, 571, 583
BssT1I CCWWGG 2 cut(s) 561, 661
Bst2UI CCWGG 2 cut(s) 13, 531
Bst4CI ACNGT 1 cut(s) 605
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 63, 276
BstDEI CTNAG 2 cut(s) 66, 261
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 571
BstKTI GATC 4 cut(s) 331, 493, 574, 586
BstMAI GTCTC 2 cut(s) 257, 701
BstMBI GATC 4 cut(s) 328, 490, 571, 583
BstMWI GCNNNNNNNGC 5 cut(s) 67, 76, 148, 284, 666
BstNI CCWGG 2 cut(s) 13, 531
BstNSI RCATGY 2 cut(s) 690, 744
BstSCI CCNGG 2 cut(s) 11, 529
BstSFI CTRYAG 1 cut(s) 71
BstSNI TACGTA 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 57, 151
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 119
BsuRI GGCC 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 571
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 63, 276
CaiI CAGNNNCTG 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 3 cut(s) 25, 54, 258
CviAII CATG 5 cut(s) 308, 520, 562, 687, 741
CviJI RGCY 9 cut(s) 70, 79, 197, 230, 287, 436, 517, 537, 697
CviKI_1 RGCY 9 cut(s) 70, 79, 197, 230, 287, 436, 517, 537, 697
CviQI GTAC 3 cut(s) 25, 54, 258
DdeI CTNAG 2 cut(s) 66, 261
DpnI GATC 4 cut(s) 330, 492, 573, 585
DpnII GATC 4 cut(s) 328, 490, 571, 583
DraI TTTAAA 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 517
Eco105I TACGTA 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 561, 661
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 519, 699
Eco53kI GAGCTC 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 11, 529
EcoT14I CCWWGG 2 cut(s) 561, 661
EcoT38I GRGCYC 2 cut(s) 519, 699
ErhI CCWWGG 2 cut(s) 561, 661
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 5 cut(s) 311, 523, 565, 690, 744
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 398, 521
FatI CATG 5 cut(s) 307, 519, 561, 686, 740
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 71, 140
FokI GGATG 1 cut(s) 578
FriOI GRGCYC 2 cut(s) 519, 699
Fsp4HI GCNGC 2 cut(s) 71, 140
GluI GCNGC 2 cut(s) 71, 140
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 5 cut(s) 311, 523, 565, 690, 744
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 2 cut(s) 318, 714
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 2 cut(s) 25, 31
Hpy188I TCNGA 2 cut(s) 84, 333
Hpy188III TCNNGA 4 cut(s) 41, 95, 236, 494
Hpy8I GTNNAC 2 cut(s) 25, 31
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 259, 356
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 2 cut(s) 27, 56
HpyCH4V TGCA 4 cut(s) 73, 245, 344, 744
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 76, 148, 284, 666
HpyF3I CTNAG 2 cut(s) 66, 261
HpySE526I ACGT 2 cut(s) 27, 56
Hsp92II CATG 5 cut(s) 311, 523, 565, 690, 744
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 328, 490, 571, 583
Lsp1109I GCAGC 2 cut(s) 57, 151
LweI GCATC 1 cut(s) 556
MaeII ACGT 2 cut(s) 27, 56
MaeIII GTNAC 2 cut(s) 500, 644
MalI GATC 4 cut(s) 330, 492, 573, 585
MboI GATC 4 cut(s) 328, 490, 571, 583
MboII GAAGA 4 cut(s) 197, 200, 359, 386
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 519, 699
MluCI AATT 4 cut(s) 222, 390, 579, 655
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 8 cut(s) 69, 129, 187, 208, 319, 408, 462, 659
MseI TTAA 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 13, 531
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 13, 531
MwoI GCNNNNNNNGC 5 cut(s) 67, 76, 148, 284, 666
NcoI CCATGG 1 cut(s) 561
NdeII GATC 4 cut(s) 328, 490, 571, 583
NlaIII CATG 5 cut(s) 311, 523, 565, 690, 744
NlaIV GGNNCC 1 cut(s) 677
NmuCI GTSAC 2 cut(s) 500, 644
NspI RCATGY 2 cut(s) 690, 744
PceI AGGCCT 1 cut(s) 197
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 714
PkrI GCNGC 2 cut(s) 72, 141
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Ppu21I YACGTR 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 11, 529
PspGI CCWGG 2 cut(s) 11, 529
PspN4I GGNNCC 1 cut(s) 677
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 3 cut(s) 26, 55, 259
RsaNI GTAC 3 cut(s) 25, 54, 258
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 2 cut(s) 71, 140
Sau3AI GATC 4 cut(s) 328, 490, 571, 583
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 13, 531
SduI GDGCHC 2 cut(s) 519, 699
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 71
SnaBI TACGTA 1 cut(s) 28
Sse9I AATT 4 cut(s) 222, 390, 579, 655
SseBI AGGCCT 1 cut(s) 197
SstI GAGCTC 1 cut(s) 519
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 11, 529
StyI CCWWGG 2 cut(s) 561, 661
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 2 cut(s) 30, 59
TaqI TCGA 4 cut(s) 94, 119, 321, 513
TasI AATT 4 cut(s) 222, 390, 579, 655
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 1 cut(s) 714
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 2 cut(s) 500, 644
TseI GCWGC 2 cut(s) 70, 139
Tsp45I GTSAC 2 cut(s) 500, 644
TspDTI ATGAA 3 cut(s) 396, 606, 666
TspRI CASTG 1 cut(s) 158
XceI RCATGY 2 cut(s) 690, 744
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.