AT1G54450

serine threonine protein phosphatase 2A regulatory subunit B''delta

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20336203 .. 20339769
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54450.1

Sequence Viewer

Length: 1608 bp
ATGGAGTCGATAACGTTAGATATAGAGCTGTTGCAGTTACCAGAGACATCGCCAATGTCGATGAAATCTAATCAAGATTTTGTTAAGAAGCTCTTTGATCAATGGCTTGCTCTTCCTGAAACCAATCGTTTGGTTACATCTTTGGTAAATGATGCAAAGGCAGGAGTGGCTTTGAATGTTATGTGTGGAGGAGGCTCTTCTGGCACGAATTCAGGGTCGAATAGTCCATTAGCTTCAATGTTTCCGGCACGCAATGGGCCTCCTCTTTCTCCAAGGAATTCAACTGGTTCTCCTCGGATCGCCAGACAAAGAACTGGACTATCAAATCTTAGTTCTCCTCTCAAAGTAGTTTCTGATCATGTTAAAGAACTCATTCCTCAGTTTTACTTTGAAGATGGTCGGCCACCACCAAATGATCTAAAAGAGCAGTGCATAGCTAAGATCAATAGTCTTTTCTATGGCCACGAGGATGGTTTGCAACTCCAAGAATTTAAATTAGTCACTACTGAAATATGCAAAGTTCCATCATTTTTTTCCACCTCCATTTTCAAGAAAGTTGATACCAATAACACTGGTTTTGTGAAAAGAGAAGACTTCATTGATTATTGGGTTAAGGGAAATATGTTAACAAAGGAGATAACAAGTCAAGTATTTACAATATTGAAGCAGCCAGATCACAACTACCTTGTCCAGGATGATTTCAAGCCAGTGCTTCAAGAATTATTGGCAACACACCCTGGTCTTGAATTCTTGCAAGGCACACCGGAATTTCAGGATAGATATGCTGAAACTGTAATATACAGAATATATTACTACATAAATAGGAGTGGAAATGGGCATCTTACCTTGAGAGAGCTTAAGCGAGGAAATTTAGTTGACGCAATGCAGCATGCCGATGAAGAAGAGGACATCAATAAGGTGTTGAGGTACTTCTCGTATGAACATTTCTATGTCATATACTGCAAGTTCTGGGAGTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGGTACCGAGGAAGTTTACTAGTAAAACCGAAGGAAAGATGGGTTATGAGGATTTTGTTTACTTCATATTGGCTGAAGAAGACAAGTCATCAGAACCTAGTCTTGAGTATTGGTTCAAGTGCATTGATTTGGATGCAAATGGAGTTTTGACGCGGAACGAGCTGCAATTCTTTTACGAGGAGCAGCTACATAGAATGGAATGCATGGCGCAAGAGGCGGTGTTGTTTGAGGATATTTTGTGCCAATTATTCGACATGGTCAAACCAGAGGACGAAGGGTTCATTTGTCTAAATGATTTGAAGGGTTCTAAACTTTCTGGAAATGTCTTCAACATACTTTTTAACCTCAACAAGTTTATGGCGTTTGAAACGCGTGATCCCTTCCTCATCCGCCAGGAGCGCGCAAATCCGACATGGACAGAGTGGGATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATGGAAGAAGATGTCGAAGATGCTTCTAATGGAAGTGCTGAAGCATGGGACGACTCACTTGAGGTCCCCTTTTGA

Protein Analysis

535

Amino Acids

61.94

Weight (kDa)

4.89

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 215 - 301 1.3e-32 EF-hand domain
EF-hand_7 PF13499 317 - 416 6.2e-10 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1075
AccB1I GGYRCC 1 cut(s) 1075
AccII CGCG 3 cut(s) 1225, 1444, 1473
AciI CCGC 3 cut(s) 1225, 1289, 1462
AclI AACGTT 1 cut(s) 14
AclWI GGATC 3 cut(s) 305, 1442, 1506
AcoI YGGCCR 2 cut(s) 401, 460
AcsI RAATTY 6 cut(s) 208, 277, 488, 746, 767, 868
AcuI CTGAAG 2 cut(s) 1167, 1593
AfaI GTAC 2 cut(s) 929, 1077
AfiI CCNNNNNNNGG 1 cut(s) 691
AflII CTTAAG 1 cut(s) 857
AflIII ACRYGT 1 cut(s) 1442
AhlI ACTAGT 1 cut(s) 1091
AjnI CCWGG 3 cut(s) 690, 736, 1464
AloI GAACNNNNNNTCC 2 cut(s) 1334, 1366
AluBI AGCT 7 cut(s) 28, 91, 233, 437, 856, 1234, 1258
AluI AGCT 7 cut(s) 28, 91, 233, 437, 856, 1234, 1258
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 3 cut(s) 305, 1442, 1506
AoxI GGCC 3 cut(s) 257, 401, 460
ApeKI GCWGC 4 cut(s) 667, 886, 1234, 1255
ApoI RAATTY 6 cut(s) 208, 277, 488, 746, 767, 868
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
Asp700I GAANNNNTTC 2 cut(s) 372, 1066
Asp718I GGTACC 1 cut(s) 1075
AspLEI GCGC 4 cut(s) 1039, 1282, 1473, 1475
AspS9I GGNCC 2 cut(s) 257, 1597
AsuHPI GGTGA 1 cut(s) 1033
AvaII GGWCC 1 cut(s) 1597
BalI TGGCCA 1 cut(s) 462
BanI GGYRCC 1 cut(s) 1075
BauI CACGAG 1 cut(s) 464
BbsI GAAGAC 3 cut(s) 597, 1158, 1390
BbvI GCAGC 4 cut(s) 679, 898, 1221, 1267
BccI CCATC 4 cut(s) 389, 464, 532, 1105
BciT130I CCWGG 3 cut(s) 692, 738, 1466
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 2 cut(s) 97, 355
BcoDI GTCTC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 1091
BfaI CTAG 2 cut(s) 1092, 1170
BfmI CTRYAG 1 cut(s) 1045
BfrI CTTAAG 1 cut(s) 857
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 4 cut(s) 668, 887, 1235, 1256
BlsI GCNGC 4 cut(s) 669, 888, 1236, 1257
Bme1390I CCNGG 3 cut(s) 692, 738, 1466
Bme18I GGWCC 1 cut(s) 1597
BmgT120I GGNCC 2 cut(s) 257, 1597
BmiI GGNNCC 2 cut(s) 1077, 1599
BmrFI CCNGG 3 cut(s) 692, 738, 1466
BmsI GCATC 4 cut(s) 142, 847, 1195, 1543
BpiI GAAGAC 3 cut(s) 597, 1158, 1390
BpuEI CTTGAG 2 cut(s) 868, 1196
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 4 cut(s) 272, 293, 736, 1079
BsaWI WCCGGW 1 cut(s) 763
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse1I ACTGG 4 cut(s) 289, 319, 577, 707
Bse3DI GCAATG 2 cut(s) 259, 888
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 3 cut(s) 692, 738, 1466
BseDI CCNNGG 4 cut(s) 272, 293, 736, 1079
BseGI GGATG 5 cut(s) 475, 700, 1017, 1210, 1458
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 2 cut(s) 259, 888
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 4 cut(s) 289, 319, 577, 707
BsePI GCGCGC 1 cut(s) 1471
BseRI GAGGAG 5 cut(s) 204, 252, 282, 327, 1265
BseXI GCAGC 4 cut(s) 679, 898, 1221, 1267
Bsh1236I CGCG 3 cut(s) 1225, 1444, 1473
Bsh1285I CGRYCG 1 cut(s) 1060
BshFI GGCC 3 cut(s) 259, 403, 462
BshNI GGYRCC 1 cut(s) 1075
BsiEI CGRYCG 1 cut(s) 1060
BsiSI CCGG 2 cut(s) 245, 764
BslFI GGGAC 2 cut(s) 1583, 1595
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 1583, 1595
BsmI GAATGC 1 cut(s) 1277
BsnI GGCC 3 cut(s) 259, 403, 462
BspACI CCGC 3 cut(s) 1225, 1289, 1462
BspANI GGCC 3 cut(s) 259, 403, 462
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 3 cut(s) 1225, 1444, 1473
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 2 cut(s) 1077, 1599
BspPI GGATC 3 cut(s) 305, 1442, 1506
BspQI GCTCTTC 2 cut(s) 117, 202
BspT107I GGYRCC 1 cut(s) 1075
BspTI CTTAAG 1 cut(s) 857
BsrDI GCAATG 2 cut(s) 259, 888
BsrI ACTGG 4 cut(s) 289, 319, 577, 707
BssECI CCNNGG 4 cut(s) 272, 293, 736, 1079
BssHII GCGCGC 1 cut(s) 1471
BssSI CACGAG 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 464
Bst2UI CCWGG 3 cut(s) 692, 738, 1466
Bst4CI ACNGT 1 cut(s) 793
Bst6I CTCTTC 3 cut(s) 117, 202, 897
BstAFI CTTAAG 1 cut(s) 857
BstC8I GCNNGC 4 cut(s) 108, 250, 891, 1473
BstDEI CTNAG 3 cut(s) 329, 378, 438
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 5 cut(s) 475, 700, 1017, 1210, 1458
BstFNI CGCG 3 cut(s) 1225, 1444, 1473
BstHHI GCGC 4 cut(s) 1039, 1282, 1473, 1475
BstMAI GTCTC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 1060
BstMWI GCNNNNNNNGC 5 cut(s) 167, 201, 1231, 1286, 1470
BstNI CCWGG 3 cut(s) 692, 738, 1466
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 3 cut(s) 690, 736, 1464
BstSFI CTRYAG 1 cut(s) 1045
BstUI CGCG 3 cut(s) 1225, 1444, 1473
BstV1I GCAGC 4 cut(s) 679, 898, 1221, 1267
BstV2I GAAGAC 3 cut(s) 597, 1158, 1390
BstXI CCANNNNNNTGG 2 cut(s) 130, 470
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 3 cut(s) 259, 403, 462
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 5 cut(s) 475, 700, 1017, 1210, 1458
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 3 cut(s) 434, 570, 714
Cac8I GCNNGC 4 cut(s) 108, 250, 891, 1473
CciI TCATGA 1 cut(s) 988
CfoI GCGC 4 cut(s) 1039, 1282, 1473, 1475
Cfr13I GGNCC 2 cut(s) 257, 1597
CseI GACGC 2 cut(s) 887, 1231
Csp6I GTAC 2 cut(s) 928, 1076
CviAII CATG 8 cut(s) 359, 890, 989, 1034, 1276, 1327, 1485, 1578
CviQI GTAC 2 cut(s) 928, 1076
DdeI CTNAG 3 cut(s) 329, 378, 438
DraI TTTAAA 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 401, 460
Eam1104I CTCTTC 3 cut(s) 117, 202, 897
EarI CTCTTC 3 cut(s) 117, 202, 897
EciI GGCGGA 1 cut(s) 1451
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 1597
Eco57I CTGAAG 2 cut(s) 1167, 1593
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 1597
EcoRI GAATTC 3 cut(s) 208, 277, 746
EcoRII CCWGG 3 cut(s) 690, 736, 1464
EcoT14I CCWWGG 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 1277
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 8 cut(s) 362, 893, 992, 1037, 1279, 1330, 1488, 1581
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 2 cut(s) 1583, 1595
FatI CATG 8 cut(s) 358, 889, 988, 1033, 1275, 1326, 1484, 1577
FbaI TGATCA 2 cut(s) 97, 355
Fnu4HI GCNGC 4 cut(s) 668, 887, 1235, 1256
FokI GGATG 5 cut(s) 482, 707, 1004, 1217, 1445
Fsp4HI GCNGC 4 cut(s) 668, 887, 1235, 1256
FspBI CTAG 2 cut(s) 1092, 1170
GlaI GCGC 4 cut(s) 1038, 1281, 1472, 1474
GluI GCNGC 4 cut(s) 668, 887, 1235, 1256
HaeIII GGCC 3 cut(s) 259, 403, 462
HapII CCGG 2 cut(s) 245, 764
HgaI GACGC 2 cut(s) 887, 1231
HhaI GCGC 4 cut(s) 1039, 1282, 1473, 1475
Hin1II CATG 8 cut(s) 362, 893, 992, 1037, 1279, 1330, 1488, 1581
Hin6I GCGC 4 cut(s) 1037, 1280, 1471, 1473
HinP1I GCGC 4 cut(s) 1037, 1280, 1471, 1473
HincII GTYRAC 2 cut(s) 627, 877
HindII GTYRAC 2 cut(s) 627, 877
HinfI GANTC 4 cut(s) 5, 1012, 1062, 1586
HpaI GTTAAC 1 cut(s) 627
HpaII CCGG 2 cut(s) 245, 764
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 4 cut(s) 627, 877, 1089, 1132
Hpy188I TCNGA 5 cut(s) 297, 355, 1022, 1165, 1482
Hpy188III TCNNGA 9 cut(s) 74, 116, 550, 716, 743, 773, 989, 1175, 1389
Hpy8I GTNNAC 4 cut(s) 627, 877, 1089, 1132
HpyAV CCTTC 4 cut(s) 1097, 1340, 1366, 1462
HpyCH4III ACNGT 1 cut(s) 793
HpyCH4IV ACGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 201, 1231, 1286, 1470
HpyF3I CTNAG 3 cut(s) 329, 378, 438
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 8 cut(s) 362, 893, 992, 1037, 1279, 1330, 1488, 1581
HspAI GCGC 4 cut(s) 1037, 1280, 1471, 1473
KpnI GGTACC 1 cut(s) 1079
Ksp22I TGATCA 2 cut(s) 97, 355
KspAI GTTAAC 1 cut(s) 627
LguI GCTCTTC 2 cut(s) 117, 202
LmnI GCTCC 2 cut(s) 1252, 1468
Lsp1109I GCAGC 4 cut(s) 679, 898, 1221, 1267
LweI GCATC 4 cut(s) 142, 847, 1195, 1543
MaeI CTAG 2 cut(s) 1092, 1170
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 4 cut(s) 36, 133, 499, 1028
MlsI TGGCCA 1 cut(s) 462
MluI ACGCGT 1 cut(s) 1442
MluNI TGGCCA 1 cut(s) 462
MlyI GAGTC 2 cut(s) 14, 1580
MmeI TCCRAC 2 cut(s) 957, 1505
Mox20I TGGCCA 1 cut(s) 462
Mph1103I ATGCAT 1 cut(s) 1277
MroXI GAANNNNTTC 2 cut(s) 372, 1066
MscI TGGCCA 1 cut(s) 462
MseI TTAA 8 cut(s) 84, 363, 492, 612, 626, 858, 998, 1413
MslI CAYNNNNRTG 3 cut(s) 468, 894, 948
Msp20I TGGCCA 1 cut(s) 462
MspCI CTTAAG 1 cut(s) 857
MspI CCGG 2 cut(s) 245, 764
MspR9I CCNGG 3 cut(s) 692, 738, 1466
Mva1269I GAATGC 1 cut(s) 1277
MvaI CCWGG 3 cut(s) 692, 738, 1466
MvnI CGCG 3 cut(s) 1225, 1444, 1473
MwoI GCNNNNNNNGC 5 cut(s) 167, 201, 1231, 1286, 1470
NlaIII CATG 8 cut(s) 362, 893, 992, 1037, 1279, 1330, 1488, 1581
NlaIV GGNNCC 2 cut(s) 1077, 1599
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 1277
NspI RCATGY 1 cut(s) 893
PaeI GCATGC 1 cut(s) 893
PagI TCATGA 1 cut(s) 988
PauI GCGCGC 1 cut(s) 1471
PciSI GCTCTTC 2 cut(s) 117, 202
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 1277
PdmI GAANNNNTTC 2 cut(s) 372, 1066
PfeI GAWTC 2 cut(s) 1012, 1062
PflFI GACNNNGTC 1 cut(s) 1328
PfoI TCCNGGA 1 cut(s) 690
PkrI GCNGC 4 cut(s) 669, 888, 1236, 1257
Ple19I CGATCG 1 cut(s) 1060
PleI GAGTC 2 cut(s) 13, 1580
PpsI GAGTC 2 cut(s) 13, 1580
PpuMI RGGWCCY 1 cut(s) 1597
Psp1406I AACGTT 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 1597
Psp6I CCWGG 3 cut(s) 690, 736, 1464
PspGI CCWGG 3 cut(s) 690, 736, 1464
PspN4I GGNNCC 2 cut(s) 1077, 1599
PspPI GGNCC 2 cut(s) 257, 1597
PspPPI RGGWCCY 1 cut(s) 1597
PsyI GACNNNGTC 1 cut(s) 1328
PteI GCGCGC 1 cut(s) 1471
PvuI CGATCG 1 cut(s) 1060
RsaI GTAC 2 cut(s) 929, 1077
RsaNI GTAC 2 cut(s) 928, 1076
RseI CAYNNNNRTG 3 cut(s) 468, 894, 948
SapI GCTCTTC 2 cut(s) 117, 202
SaqAI TTAA 8 cut(s) 84, 363, 492, 612, 626, 858, 998, 1413
SatI GCNGC 4 cut(s) 668, 887, 1235, 1256
Sau96I GGNCC 2 cut(s) 257, 1597
SchI GAGTC 2 cut(s) 14, 1580
ScrFI CCNGG 3 cut(s) 692, 738, 1466
SfaNI GCATC 4 cut(s) 142, 847, 1195, 1543
SfcI CTRYAG 1 cut(s) 1045
SinI GGWCC 1 cut(s) 1597
SmiI ATTTAAAT 1 cut(s) 493
SmiMI CAYNNNNRTG 3 cut(s) 468, 894, 948
SmlI CTYRAG 4 cut(s) 847, 857, 1175, 1592
SmoI CTYRAG 4 cut(s) 847, 857, 1175, 1592
SpeI ACTAGT 1 cut(s) 1091
SphI GCATGC 1 cut(s) 893
SsiI CCGC 3 cut(s) 1225, 1289, 1462
SspI AATATT 1 cut(s) 660
SspMI CTAG 2 cut(s) 1092, 1170
StyD4I CCNGG 3 cut(s) 690, 736, 1464
StyI CCWWGG 1 cut(s) 272
SwaI ATTTAAAT 1 cut(s) 493
TaaI ACNGT 1 cut(s) 793
TaiI ACGT 1 cut(s) 17
TaqI TCGA 8 cut(s) 8, 59, 218, 1002, 1056, 1060, 1323, 1548
TfiI GAWTC 2 cut(s) 1012, 1062
Tru1I TTAA 8 cut(s) 84, 363, 492, 612, 626, 858, 998, 1413
Tru9I TTAA 8 cut(s) 84, 363, 492, 612, 626, 858, 998, 1413
TscAI CASTG 3 cut(s) 434, 577, 714
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 4 cut(s) 667, 886, 1234, 1255
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 6 cut(s) 77, 586, 912, 954, 1126, 1342
TspRI CASTG 3 cut(s) 434, 577, 714
Tth111I GACNNNGTC 1 cut(s) 1328
Vha464I CTTAAG 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 1597
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 6 cut(s) 208, 277, 488, 746, 767, 868
XceI RCATGY 1 cut(s) 893
XmnI GAANNNNTTC 2 cut(s) 372, 1066
XspI CTAG 2 cut(s) 1092, 1170
Zsp2I ATGCAT 1 cut(s) 1277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.