Rroxscaffold_6G00427590

phosphatase 2A regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
48147140 .. 48147563
424 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00427590.1

Sequence Viewer

Length: 306 bp
ATGGTCTTTCGGTGGTTGACCTGCAGTTTGTTCCTGCAGAATGAGAGCTATATTACACTCCGTGACCTGAAAGGTTGTAAGCTTTCAGGAAGCGTTTTCAATATTCTTTTCAACCTTAACAAGTTCATGGCCTTTGAAACTCGTGATCCGTTTCTCATTCGTCAGGAACGTGAGAATCCAACCTTGACAGAGTGGGATCGGTTTGCACATAGAGAATATATCAGGCTTTCAATGGAAGAAGATGTTGAAGATGCTTCCAATGGAAGTGCAGAAGTTTGGGATGAATCACTTGAGGCTCCCTTTTAA

Protein Analysis

101

Amino Acids

12.01

Weight (kDa)

4.64

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AclWI GGATC 2 cut(s) 140, 204
AdeI CACNNNGTG 1 cut(s) 62
AgsI TTSAA 5 cut(s) 100, 112, 137, 231, 248
AluBI AGCT 2 cut(s) 48, 82
AluI AGCT 2 cut(s) 48, 82
AlwI GGATC 2 cut(s) 140, 204
AoxI GGCC 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
BauI CACGAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 22, 35
BfuAI ACCTGC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 241
BseGI GGATG 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 131
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 145, 196
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 2 cut(s) 26, 39
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 140, 204
BssMI GATC 2 cut(s) 145, 196
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 148, 199
BstMBI GATC 2 cut(s) 145, 196
BstSFI CTRYAG 2 cut(s) 22, 35
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 29
CviAII CATG 1 cut(s) 127
CviJI RGCY 5 cut(s) 48, 82, 131, 226, 296
CviKI_1 RGCY 5 cut(s) 48, 82, 131, 226, 296
DpnI GATC 2 cut(s) 147, 198
DpnII GATC 2 cut(s) 145, 196
DraIII CACNNNGTG 1 cut(s) 62
FaeI CATG 1 cut(s) 130
FaiI YATR 4 cut(s) 51, 128, 210, 219
FatI CATG 1 cut(s) 126
FokI GGATG 1 cut(s) 293
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 1 cut(s) 130
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 175, 284
Hpy166II GTNNAC 1 cut(s) 18
Hpy188III TCNNGA 3 cut(s) 87, 143, 164
Hpy8I GTNNAC 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 24, 37, 206, 269
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 145, 196
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 34, 47, 72, 80, 149, 208
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 147, 198
MboI GATC 2 cut(s) 145, 196
MboII GAAGA 3 cut(s) 248, 251, 260
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 1 cut(s) 286
MseI TTAA 2 cut(s) 117, 304
NdeII GATC 2 cut(s) 145, 196
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 2 cut(s) 175, 284
PspN4I GGNNCC 1 cut(s) 297
PstI CTGCAG 2 cut(s) 26, 39
SaqAI TTAA 2 cut(s) 117, 304
Sau3AI GATC 2 cut(s) 145, 196
SetI ASST 8 cut(s) 23, 50, 69, 76, 84, 117, 172, 185
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 2 cut(s) 22, 35
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SspI AATATT 1 cut(s) 103
TaiI ACGT 1 cut(s) 172
TfiI GAWTC 2 cut(s) 175, 284
Tru1I TTAA 2 cut(s) 117, 304
Tru9I TTAA 2 cut(s) 117, 304
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 115, 297
TspGWI ACGGA 2 cut(s) 50, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.