AT5G28900

serine threonine protein phosphatase 2A regulatory subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
10925635 .. 10930462
4828 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28900.1

Sequence Viewer

Length: 1611 bp
ATGGTGGATACGGTTATTCCCGGAGATATGGCTTGTTTGGATGCAGATTTGTTGCAGCTTCAGGAAATGTCTTCCTTTGTTCTCAATTCTAAACCTGGATTCACTCAGAAGCTCTTCGACCAGTGGCTTTCTCTTCCCGAAGCTCAGCGACAGGTTGGATCATTGCTTAAGGATGCTGTAGCTGGAGCTCCTATCAATGTTACTGGAAGTGCATCGGGTTCTAATTCTGCCACTATACCATCTATGTTTCCTGCGGGAAGTGCTCCTCCGCTTTCACCAAGGAGTTGTGGTTCACCCCGTACAACCAAACAGAGAGCCCCTTCTAACTTAGGTTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAGTTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGTATGTTTAGAATCAATCACTTCTTTTATGGTCACATGGATGGCTTGCAGATACAAGAATTCAAGTTAGTCACCAGAGAAATCTGCAAGCTCCCATCTTTCTTCTCCACTTCCCTTTTCCGGAAGATCGATCTCAACAATACAGGTTTTGTTACTAGAGATGCATTTATTGATTTTTGGGTAAACGGGAACATGTTGATAATGGATACAACGACCCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAAGGATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGCTAGAGTTCCTGCAATCCACACCTGAATTCCAAGAAAGATATGCTGAAACTGTCACCTACCGAATATTTTATTACATAAATAGATCTGGCAATGGTCGAATTACATTTAGGGAGCTTAAACGGGGAAACTTAATTGATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGATACTTCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGATGGGGTATGAGGACTTTGTCTATTTCATTCTTGCGGAAGAAGATAAATCGTCAGTGCCTAGCCTAGAATATTGGTTTAAGTGCATAGACTTGGATGCAAATGGGATTATTACGCGAAATGAGATGCAATTCTTTTATGAAGAGCAGTTGCATAGAATGGAGTGCATGGCGCAAGAGGCTGTTCTTTTCGAGGATATCTTATGTCAGATGATTGATATGATCGGACCTGAGAACGAAAGCCATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTATTTAATCTCAACAAATTTATGGCATTTGAAACCCGGGATCCATTCCTCATTCGTCAGGAGCGAGAGAACCCTACATTGACAGATTGGGACCGTTTTGCACATAGAGAGTATATTAGGCTATCAATGGAAGAAGATGTTGAAGATGCATCTAATGGAAGTGCTGAGGTTTGGGATGAGTCGTCGCTGGAGGCTCCCTTTTGA

Protein Analysis

536

Amino Acids

62.02

Weight (kDa)

5.04

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 212 - 301 7.7e-33 EF-hand domain
EF-hand_7 PF13499 317 - 416 1.2e-09 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1056
AccII CGCG 1 cut(s) 1225
AccIII TCCGGA 1 cut(s) 549
AciI CCGC 3 cut(s) 254, 269, 1145
AclWI GGATC 4 cut(s) 166, 993, 1442, 1455
AcsI RAATTY 3 cut(s) 488, 767, 1424
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 549
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 7 cut(s) 493, 655, 703, 1103, 1402, 1439, 1550
AjnI CCWGG 3 cut(s) 94, 736, 1071
AloI GAACNNNNNNTCC 2 cut(s) 274, 306
AluBI AGCT 9 cut(s) 58, 112, 143, 182, 188, 520, 856, 976, 1384
AluI AGCT 9 cut(s) 58, 112, 143, 182, 188, 520, 856, 976, 1384
Alw21I GWGCWC 2 cut(s) 190, 265
AlwI GGATC 4 cut(s) 166, 993, 1442, 1455
Ama87I CYCGRG 1 cut(s) 1443
Aor13HI TCCGGA 1 cut(s) 549
ApeKI GCWGC 2 cut(s) 55, 1360
ApoI RAATTY 3 cut(s) 488, 767, 1424
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 1282
AspS9I GGNCC 2 cut(s) 1334, 1498
AsuC2I CCSGG 3 cut(s) 21, 1444, 1445
AsuHPI GGTGA 4 cut(s) 267, 285, 493, 787
AvaI CYCGRG 1 cut(s) 1443
AvaII GGWCC 2 cut(s) 1334, 1498
BamHI GGATCC 1 cut(s) 1447
BanII GRGCYC 2 cut(s) 190, 319
BbsI GAAGAC 2 cut(s) 63, 1390
Bbv12I GWGCWC 2 cut(s) 190, 265
BbvCI CCTCAGC 1 cut(s) 1572
BbvI GCAGC 2 cut(s) 67, 1347
BccI CCATC 4 cut(s) 247, 464, 532, 1105
BciT130I CCWGG 3 cut(s) 96, 738, 1073
BciVI GTATCC 2 cut(s) 628, 973
BcnI CCSGG 3 cut(s) 21, 1444, 1445
BfaI CTAG 5 cut(s) 585, 743, 1080, 1170, 1175
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 167
BfuI GTATCC 2 cut(s) 628, 973
BglII AGATCT 1 cut(s) 824
BisI GCNGC 2 cut(s) 56, 1361
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 2 cut(s) 57, 1362
Bme1390I CCNGG 6 cut(s) 21, 96, 738, 1073, 1444, 1445
Bme18I GGWCC 2 cut(s) 1334, 1498
BmeT110I CYCGRG 1 cut(s) 1443
BmgT120I GGNCC 2 cut(s) 1334, 1498
BmiI GGNNCC 3 cut(s) 1449, 1499, 1602
BmrFI CCNGG 6 cut(s) 21, 96, 738, 1073, 1444, 1445
BpiI GAAGAC 2 cut(s) 63, 1390
BpmI CTGGAG 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 1572
Bpu1102I GCTNAGC 1 cut(s) 144
BpuMI CCSGG 3 cut(s) 21, 1444, 1445
Bsa29I ATCGAT 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 4 cut(s) 278, 737, 1071, 1443
BsaWI WCCGGW 2 cut(s) 549, 1047
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 2 cut(s) 121, 208
Bse3DI GCAATG 3 cut(s) 161, 434, 838
Bse8I GATNNNNATC 1 cut(s) 984
BseAI TCCGGA 1 cut(s) 549
BseBI CCWGG 3 cut(s) 96, 738, 1073
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 4 cut(s) 278, 737, 1071, 1443
BseGI GGATG 8 cut(s) 46, 178, 475, 700, 733, 1210, 1404, 1588
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 3 cut(s) 161, 434, 838
BseMII CTCAG 5 cut(s) 119, 158, 392, 1329, 1563
BseNI ACTGG 2 cut(s) 121, 208
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 67, 1347
Bsh1236I CGCG 1 cut(s) 1225
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 2 cut(s) 190, 265
BsiHKCI CYCGRG 1 cut(s) 1443
BsiSI CCGG 4 cut(s) 21, 550, 1048, 1444
BslFI GGGAC 1 cut(s) 1511
BslI CCNNNNNNNGG 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 1511
BsoBI CYCGRG 1 cut(s) 1443
Bsp1286I GDGCHC 3 cut(s) 190, 265, 319
Bsp13I TCCGGA 1 cut(s) 549
Bsp143I GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 3 cut(s) 254, 269, 1145
BspCNI CTCAG 5 cut(s) 118, 157, 391, 1330, 1564
BspDI ATCGAT 1 cut(s) 558
BspEI TCCGGA 1 cut(s) 549
BspFNI CGCG 1 cut(s) 1225
BspLI GGNNCC 3 cut(s) 1449, 1499, 1602
BspPI GGATC 4 cut(s) 166, 993, 1442, 1455
BspQI GCTCTTC 2 cut(s) 119, 1245
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 3 cut(s) 161, 434, 838
BsrI ACTGG 2 cut(s) 121, 208
BssECI CCNNGG 4 cut(s) 278, 737, 1071, 1443
BssMI GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 3 cut(s) 96, 738, 1073
Bst4CI ACNGT 4 cut(s) 13, 723, 793, 1502
Bst6I CTCTTC 3 cut(s) 119, 138, 1245
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 476, 518
BstDEI CTNAG 6 cut(s) 105, 144, 328, 378, 1338, 1572
BstF5I GGATG 8 cut(s) 46, 178, 475, 700, 733, 1210, 1404, 1588
BstFNI CGCG 1 cut(s) 1225
BstHHI GCGC 1 cut(s) 1282
BstKTI GATC 8 cut(s) 161, 558, 562, 676, 827, 988, 1332, 1450
BstMBI GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
BstMWI GCNNNNNNNGC 3 cut(s) 260, 739, 1286
BstNI CCWGG 3 cut(s) 96, 738, 1073
BstNSI RCATGY 2 cut(s) 625, 893
BstSCI CCNGG 6 cut(s) 19, 94, 736, 1071, 1442, 1443
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 1225
BstV1I GCAGC 2 cut(s) 67, 1347
BstV2I GAAGAC 2 cut(s) 63, 1390
BstX2I RGATCY 2 cut(s) 824, 1447
BstYI RGATCY 2 cut(s) 824, 1447
Bsu15I ATCGAT 1 cut(s) 558
BsuI GTATCC 2 cut(s) 628, 973
BsuTUI ATCGAT 1 cut(s) 558
BtsCI GGATG 8 cut(s) 46, 178, 475, 700, 733, 1210, 1404, 1588
BtsIMutI CAGTG 2 cut(s) 128, 1170
Cac8I GCNNGC 2 cut(s) 476, 518
CfoI GCGC 1 cut(s) 1282
Cfr13I GGNCC 2 cut(s) 1334, 1498
Cfr9I CCCGGG 1 cut(s) 1443
ClaI ATCGAT 1 cut(s) 558
CseI GACGC 1 cut(s) 739
Csp6I GTAC 1 cut(s) 300
CviAII CATG 6 cut(s) 466, 622, 890, 1034, 1276, 1364
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 6 cut(s) 105, 144, 328, 378, 1338, 1572
DpnI GATC 8 cut(s) 160, 557, 561, 675, 826, 987, 1331, 1449
DpnII GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
Eam1104I CTCTTC 3 cut(s) 119, 138, 1245
EarI CTCTTC 3 cut(s) 119, 138, 1245
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 278
Eco24I GRGCYC 2 cut(s) 190, 319
Eco32I GATATC 1 cut(s) 1306
Eco47I GGWCC 2 cut(s) 1334, 1498
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 1443
EcoICRI GAGCTC 1 cut(s) 188
EcoRI GAATTC 2 cut(s) 488, 767
EcoRII CCWGG 3 cut(s) 94, 736, 1071
EcoRV GATATC 1 cut(s) 1306
EcoT14I CCWWGG 1 cut(s) 278
EcoT22I ATGCAT 2 cut(s) 595, 1558
EcoT38I GRGCYC 2 cut(s) 190, 319
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 6 cut(s) 469, 625, 893, 1037, 1279, 1367
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 1 cut(s) 1511
FatI CATG 6 cut(s) 465, 621, 889, 1033, 1275, 1363
FauI CCCGC 1 cut(s) 247
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 2 cut(s) 56, 1361
FokI GGATG 8 cut(s) 53, 185, 482, 707, 720, 1217, 1391, 1595
FriOI GRGCYC 2 cut(s) 190, 319
Fsp4HI GCNGC 2 cut(s) 56, 1361
FspBI CTAG 5 cut(s) 585, 743, 1080, 1170, 1175
GlaI GCGC 1 cut(s) 1281
GluI GCNGC 2 cut(s) 56, 1361
GsuI CTGGAG 1 cut(s) 204
HapII CCGG 4 cut(s) 21, 550, 1048, 1444
HgaI GACGC 1 cut(s) 739
HhaI GCGC 1 cut(s) 1282
Hin1II CATG 6 cut(s) 469, 625, 893, 1037, 1279, 1367
Hin6I GCGC 1 cut(s) 1280
HinP1I GCGC 1 cut(s) 1280
HincII GTYRAC 2 cut(s) 352, 1057
HindII GTYRAC 2 cut(s) 352, 1057
HinfI GANTC 3 cut(s) 99, 441, 1586
HpaII CCGG 4 cut(s) 21, 550, 1048, 1444
HphI GGTGA 4 cut(s) 267, 285, 493, 787
Hpy166II GTNNAC 5 cut(s) 293, 352, 613, 1057, 1089
Hpy188I TCNGA 4 cut(s) 108, 678, 1317, 1334
Hpy188III TCNNGA 8 cut(s) 62, 137, 550, 655, 989, 997, 1389, 1466
Hpy8I GTNNAC 5 cut(s) 293, 352, 613, 1057, 1089
Hpy99I CGWCG 2 cut(s) 733, 1594
HpyAV CCTTC 2 cut(s) 330, 1097
HpyCH4III ACNGT 4 cut(s) 13, 723, 793, 1502
HpyCH4IV ACGT 1 cut(s) 1395
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 739, 1286
HpyF3I CTNAG 6 cut(s) 105, 144, 328, 378, 1338, 1572
HpySE526I ACGT 1 cut(s) 1395
Hsp92II CATG 6 cut(s) 469, 625, 893, 1037, 1279, 1367
HspAI GCGC 1 cut(s) 1280
Kpn2I TCCGGA 1 cut(s) 549
Kzo9I GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
LguI GCTCTTC 2 cut(s) 119, 1245
LmnI GCTCC 8 cut(s) 185, 193, 268, 525, 853, 973, 1468, 1606
Lsp1109I GCAGC 2 cut(s) 67, 1347
MaeI CTAG 5 cut(s) 585, 743, 1080, 1170, 1175
MaeII ACGT 1 cut(s) 1395
MaeIII GTNAC 5 cut(s) 199, 461, 499, 580, 793
MalI GATC 8 cut(s) 160, 557, 561, 675, 826, 987, 1331, 1449
MboI GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
MflI RGATCY 2 cut(s) 824, 1447
MhlI GDGCHC 3 cut(s) 190, 265, 319
MluCI AATT 8 cut(s) 85, 223, 488, 767, 840, 873, 1238, 1424
MlyI GAGTC 1 cut(s) 1595
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 9 cut(s) 276, 387, 414, 1114, 1279, 1294, 1466, 1567, 1591
Mph1103I ATGCAT 2 cut(s) 595, 1558
MroI TCCGGA 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 9 cut(s) 168, 363, 420, 690, 858, 872, 912, 1188, 1413
MslI CAYNNNNRTG 3 cut(s) 468, 894, 948
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 4 cut(s) 21, 550, 1048, 1444
MspR9I CCNGG 6 cut(s) 21, 96, 738, 1073, 1444, 1445
MvaI CCWGG 3 cut(s) 96, 738, 1073
MvnI CGCG 1 cut(s) 1225
MwoI GCNNNNNNNGC 3 cut(s) 260, 739, 1286
NciI CCSGG 3 cut(s) 21, 1444, 1445
NdeII GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
NlaIII CATG 6 cut(s) 469, 625, 893, 1037, 1279, 1367
NlaIV GGNNCC 3 cut(s) 1449, 1499, 1602
NmuCI GTSAC 3 cut(s) 461, 499, 793
NsiI ATGCAT 2 cut(s) 595, 1558
NspI RCATGY 2 cut(s) 625, 893
PciI ACATGT 1 cut(s) 621
PciSI GCTCTTC 2 cut(s) 119, 1245
PcsI WCGNNNNNNNCGW 1 cut(s) 1468
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 99, 441
PflFI GACNNNGTC 1 cut(s) 1127
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 2 cut(s) 57, 1362
PleI GAGTC 1 cut(s) 1594
PpsI GAGTC 1 cut(s) 1594
PscI ACATGT 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 3 cut(s) 94, 736, 1071
PspGI CCWGG 3 cut(s) 94, 736, 1071
PspN4I GGNNCC 3 cut(s) 1449, 1499, 1602
PspPI GGNCC 2 cut(s) 1334, 1498
PsuI RGATCY 2 cut(s) 824, 1447
PsyI GACNNNGTC 1 cut(s) 1127
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 3 cut(s) 468, 894, 948
SacI GAGCTC 1 cut(s) 190
SalI GTCGAC 1 cut(s) 1055
SapI GCTCTTC 2 cut(s) 119, 1245
SaqAI TTAA 9 cut(s) 168, 363, 420, 690, 858, 872, 912, 1188, 1413
SatI GCNGC 2 cut(s) 56, 1361
Sau3AI GATC 8 cut(s) 158, 555, 559, 673, 824, 985, 1329, 1447
Sau96I GGNCC 2 cut(s) 1334, 1498
SchI GAGTC 1 cut(s) 1595
ScrFI CCNGG 6 cut(s) 21, 96, 738, 1073, 1444, 1445
SduI GDGCHC 3 cut(s) 190, 265, 319
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 2 cut(s) 1334, 1498
SmaI CCCGGG 1 cut(s) 1445
SmiMI CAYNNNNRTG 3 cut(s) 468, 894, 948
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 8 cut(s) 85, 223, 488, 767, 840, 873, 1238, 1424
SsiI CCGC 3 cut(s) 254, 269, 1145
SspI AATATT 3 cut(s) 807, 1065, 1181
SspMI CTAG 5 cut(s) 585, 743, 1080, 1170, 1175
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 6 cut(s) 19, 94, 736, 1071, 1442, 1443
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 4 cut(s) 13, 723, 793, 1502
TaiI ACGT 1 cut(s) 1398
TaqI TCGA 5 cut(s) 117, 558, 838, 1056, 1299
TasI AATT 8 cut(s) 85, 223, 488, 767, 840, 873, 1238, 1424
TfiI GAWTC 2 cut(s) 99, 441
Tru1I TTAA 9 cut(s) 168, 363, 420, 690, 858, 872, 912, 1188, 1413
Tru9I TTAA 9 cut(s) 168, 363, 420, 690, 858, 872, 912, 1188, 1413
TscAI CASTG 2 cut(s) 128, 1170
TseFI GTSAC 3 cut(s) 461, 499, 793
TseI GCWGC 2 cut(s) 55, 1360
Tsp45I GTSAC 3 cut(s) 461, 499, 793
TspDTI ATGAA 4 cut(s) 673, 912, 1126, 1263
TspGWI ACGGA 1 cut(s) 998
TspMI CCCGGG 1 cut(s) 1443
TspRI CASTG 2 cut(s) 128, 1170
Tth111I GACNNNGTC 1 cut(s) 1127
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 1334, 1498
XapI RAATTY 3 cut(s) 488, 767, 1424
XceI RCATGY 2 cut(s) 625, 893
XmaI CCCGGG 1 cut(s) 1443
XmiI GTMKAC 1 cut(s) 1056
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 5 cut(s) 585, 743, 1080, 1170, 1175
Zsp2I ATGCAT 2 cut(s) 595, 1558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.