Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006488

Physical Location & Seq

Genomic Coordinates Reverse (-)

10876788 .. 10881485

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAAGCGAGTTTATACTCCAGATTCTATTCTTTTCTTTTCTTTTTTTCATGGCAGGATGATTTCAAACCACTACTTAAAGAACTGTTGGCGACGCATCCTGGCCTAGAGTTCCTGCAATCCACACCTGAATTCCAAGAAAGATATGCTGAAACTGTCACCTACAGAATATTTTACTACATAAATAGATCTGGCAATGGTCGAATTACATTTAGGGAGCTTAAACGGGGAAACTTAATTGATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGATACTTCTCATATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGGTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGATGGGGTATGAAGACTTTGTCTATTTCATTCTTGCGGAAGAAGATAAATCGTCAGTGCCTAGCCTAGAATATTGGTTTAAGTGCATAGACTTGGATGCAAATGGGATTATAACGCGAAATGAGATGCAATTCTTTTATGAAGAGCAGTTGCATAGAATGGAGTGCATGGCGCAAGAGGCTGTTCTTTTCGAGGATATCTTATGTCAGATGATTGATATGATCGGACCTGAGAACGAAAGCCATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTTTTTAATCTAAACAAATTTATGGCATTTGAAACCCGGGATCCGTTCCTCATTCGTCAGGAGCGCGAGAACCCGACATTGACAGACTGGGACCGTTTTGCACATAGAGAGTATATTCGGCTATCAATGGAAGAAGATGTTGAAGATGCATCCAATGGAAGTGCTGAGGTTTGGGATGACTCGTCACTGGAGGCTCCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

324

Amino Acids

38.76

Weight (kDa)

4.78

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_13	PF17958	212 - 301	7.7e-33	EF-hand domain
EF-hand_7	PF13499	317 - 416	8.5e-10	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54450 AT5G28850 AT5G28850 AT5G28900
fragaria_vesca	FvH4_6g01930
malus_domestica	MD04G1230600.v1.1 MD12G1249000.v1.1
prunus_persica	Prupe.6G350400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449671 RchiOBHm_Chr3g0449721
rosa_laevigata	RLG00000025807 RLG00000025809
rosa_multiflora	Rmu_sc0009629.1_g000003 Rmu_sc0009629.1_g000010 Rmu_sc0010999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00427570 Rroxscaffold_6G00427590
rosa_rugosa	Rorug02G0622700
rosa_samantha	Rh3AG020800 Rh3AG021100 Rh3BG021500 Rh3BG021800 Rh3CG020000 Rh3DG021300 Rh3DG021600
rosa_wichuraiana	Rw3G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	2 cut(s)	589, 837
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	3 cut(s)	357, 806, 819
AcsI	RAATTY	2 cut(s)	131, 788
AgsI	TTSAA	5 cut(s)	67, 467, 766, 803, 914
AjnI	CCWGG	2 cut(s)	100, 435
AluBI	AGCT	3 cut(s)	220, 340, 748
AluI	AGCT	3 cut(s)	220, 340, 748
AlwI	GGATC	3 cut(s)	357, 806, 819
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	724
ApoI	RAATTY	2 cut(s)	131, 788
AspLEI	GCGC	2 cut(s)	646, 837
AspS9I	GGNCC	2 cut(s)	698, 862
AsuC2I	CCSGG	2 cut(s)	808, 809
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	698, 862
BamHI	GGATCC	1 cut(s)	811
BbsI	GAAGAC	2 cut(s)	492, 754
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	1 cut(s)	711
BccI	CCATC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	102, 437
BciVI	GTATCC	1 cut(s)	337
BcnI	CCSGG	2 cut(s)	808, 809
BfaI	CTAG	5 cut(s)	107, 444, 456, 534, 539
BfmI	CTRYAG	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	725
BlsI	GCNGC	1 cut(s)	726
Bme1390I	CCNGG	4 cut(s)	102, 437, 808, 809
Bme18I	GGWCC	2 cut(s)	698, 862
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	698, 862
BmiI	GGNNCC	3 cut(s)	813, 863, 966
BmrFI	CCNGG	4 cut(s)	102, 437, 808, 809
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	6 cut(s)	106, 232, 559, 588, 907, 929
BmuI	ACTGGG	1 cut(s)	868
BpiI	GAAGAC	2 cut(s)	492, 754
BpmI	CTGGAG	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	936
BpuMI	CCSGG	2 cut(s)	808, 809
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	435, 807
BsaWI	WCCGGW	1 cut(s)	411
Bse1I	ACTGG	2 cut(s)	863, 963
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	102, 437
BseDI	CCNNGG	2 cut(s)	435, 807
BseGI	GGATG	6 cut(s)	64, 97, 574, 768, 920, 952
BseJI	GATNNNNATC	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	693, 927
BseNI	ACTGG	2 cut(s)	863, 963
BseXI	GCAGC	1 cut(s)	711
Bsh1236I	CGCG	2 cut(s)	589, 837
BshFI	GGCC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	412, 808
BslFI	GGGAC	1 cut(s)	875
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	807
Bsp143I	GATC	4 cut(s)	188, 349, 693, 811
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	694, 928
BspFNI	CGCG	2 cut(s)	589, 837
BspLI	GGNNCC	3 cut(s)	813, 863, 966
BspPI	GGATC	3 cut(s)	357, 806, 819
BspQI	GCTCTTC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	863, 963
BssECI	CCNNGG	2 cut(s)	435, 807
BssMI	GATC	4 cut(s)	188, 349, 693, 811
Bst2UI	CCWGG	2 cut(s)	102, 437
Bst4CI	ACNGT	3 cut(s)	87, 157, 866
Bst6I	CTCTTC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	702, 936
BstF5I	GGATG	6 cut(s)	64, 97, 574, 768, 920, 952
BstFNI	CGCG	2 cut(s)	589, 837
BstHHI	GCGC	2 cut(s)	646, 837
BstKTI	GATC	4 cut(s)	191, 352, 696, 814
BstMBI	GATC	4 cut(s)	188, 349, 693, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	2 cut(s)	102, 437
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	100, 435, 806, 807
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	2 cut(s)	589, 837
BstV1I	GCAGC	1 cut(s)	711
BstV2I	GAAGAC	2 cut(s)	492, 754
BstX2I	RGATCY	2 cut(s)	188, 811
BstYI	RGATCY	2 cut(s)	188, 811
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	6 cut(s)	64, 97, 574, 768, 920, 952
BtsIMutI	CAGTG	2 cut(s)	534, 956
CfoI	GCGC	2 cut(s)	646, 837
Cfr13I	GGNCC	2 cut(s)	698, 862
Cfr9I	CCCGGG	1 cut(s)	807
CseI	GACGC	1 cut(s)	103
CviAII	CATG	5 cut(s)	51, 254, 398, 640, 728
DdeI	CTNAG	2 cut(s)	702, 936
DpnI	GATC	4 cut(s)	190, 351, 695, 813
DpnII	GATC	4 cut(s)	188, 349, 693, 811
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	698, 862
Eco88I	CYCGRG	1 cut(s)	807
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	100, 435
EcoRV	GATATC	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	922
FaeI	CATG	5 cut(s)	54, 257, 401, 643, 731
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	5 cut(s)	50, 253, 397, 639, 727
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	725
FokI	GGATG	6 cut(s)	71, 84, 581, 755, 907, 959
Fsp4HI	GCNGC	1 cut(s)	725
FspBI	CTAG	5 cut(s)	107, 444, 456, 534, 539
GlaI	GCGC	2 cut(s)	645, 836
GluI	GCNGC	1 cut(s)	725
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	412, 808
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	646, 837
Hin1II	CATG	5 cut(s)	54, 257, 401, 643, 731
Hin6I	GCGC	2 cut(s)	644, 835
HinP1I	GCGC	2 cut(s)	644, 835
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	24, 950
HpaII	CCGG	2 cut(s)	412, 808
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	421, 453
Hpy188I	TCNGA	3 cut(s)	681, 698, 974
Hpy188III	TCNNGA	5 cut(s)	21, 353, 361, 753, 830
Hpy8I	GTNNAC	2 cut(s)	421, 453
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	87, 157, 866
HpyCH4IV	ACGT	1 cut(s)	759
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	2 cut(s)	702, 936
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	5 cut(s)	54, 257, 401, 643, 731
HspAI	GCGC	2 cut(s)	644, 835
Kzo9I	GATC	4 cut(s)	188, 349, 693, 811
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	4 cut(s)	217, 337, 832, 970
Lsp1109I	GCAGC	1 cut(s)	711
LweI	GCATC	6 cut(s)	106, 232, 559, 588, 907, 929
MaeI	CTAG	5 cut(s)	107, 444, 456, 534, 539
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	2 cut(s)	157, 954
MalI	GATC	4 cut(s)	190, 351, 695, 813
MboI	GATC	4 cut(s)	188, 349, 693, 811
MflI	RGATCY	2 cut(s)	188, 811
MluCI	AATT	5 cut(s)	131, 204, 237, 602, 788
MlyI	GAGTC	1 cut(s)	944
MnlI	CCTC	5 cut(s)	643, 658, 830, 931, 955
Mph1103I	ATGCAT	1 cut(s)	922
MseI	TTAA	6 cut(s)	78, 222, 236, 276, 552, 777
MslI	CAYNNNNRTG	2 cut(s)	258, 312
MspI	CCGG	2 cut(s)	412, 808
MspR9I	CCNGG	4 cut(s)	102, 437, 808, 809
MvaI	CCWGG	2 cut(s)	102, 437
MvnI	CGCG	2 cut(s)	589, 837
MwoI	GCNNNNNNNGC	1 cut(s)	650
NciI	CCSGG	2 cut(s)	808, 809
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	4 cut(s)	188, 349, 693, 811
NlaIII	CATG	5 cut(s)	54, 257, 401, 643, 731
NlaIV	GGNNCC	3 cut(s)	813, 863, 966
NmuCI	GTSAC	2 cut(s)	157, 954
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	726
PleI	GAGTC	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	100, 435
PspGI	CCWGG	2 cut(s)	100, 435
PspN4I	GGNNCC	3 cut(s)	813, 863, 966
PspPI	GGNCC	2 cut(s)	698, 862
PsuI	RGATCY	2 cut(s)	188, 811
PsyI	GACNNNGTC	1 cut(s)	491
RseI	CAYNNNNRTG	2 cut(s)	258, 312
SalI	GTCGAC	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	609
SaqAI	TTAA	6 cut(s)	78, 222, 236, 276, 552, 777
SatI	GCNGC	1 cut(s)	725
Sau3AI	GATC	4 cut(s)	188, 349, 693, 811
Sau96I	GGNCC	2 cut(s)	698, 862
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	4 cut(s)	102, 437, 808, 809
SfaNI	GCATC	6 cut(s)	106, 232, 559, 588, 907, 929
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	698, 862
SmaI	CCCGGG	1 cut(s)	809
SmiMI	CAYNNNNRTG	2 cut(s)	258, 312
Sse9I	AATT	5 cut(s)	131, 204, 237, 602, 788
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	3 cut(s)	171, 429, 545
SspMI	CTAG	5 cut(s)	107, 444, 456, 534, 539
StyD4I	CCNGG	4 cut(s)	100, 435, 806, 807
TaaI	ACNGT	3 cut(s)	87, 157, 866
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	3 cut(s)	202, 420, 663
TasI	AATT	5 cut(s)	131, 204, 237, 602, 788
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	6 cut(s)	78, 222, 236, 276, 552, 777
Tru9I	TTAA	6 cut(s)	78, 222, 236, 276, 552, 777
TscAI	CASTG	2 cut(s)	534, 963
TseFI	GTSAC	2 cut(s)	157, 954
TseI	GCWGC	1 cut(s)	724
Tsp45I	GTSAC	2 cut(s)	157, 954
TspDTI	ATGAA	6 cut(s)	17, 39, 276, 490, 498, 627
TspGWI	ACGGA	2 cut(s)	362, 804
TspMI	CCCGGG	1 cut(s)	807
TspRI	CASTG	2 cut(s)	534, 963
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	698, 862
XapI	RAATTY	2 cut(s)	131, 788
XceI	RCATGY	1 cut(s)	257
XmaI	CCCGGG	1 cut(s)	807
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	5 cut(s)	107, 444, 456, 534, 539
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.