MD12G1249000.v1.1

phosphatase 2A regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
31857463 .. 31863509
6047 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1249000.v1.1.491

Sequence Viewer

Length: 1620 bp
ATGACTATGGAAATCGTGGTGGATGCGGCGTCGTTTGACGCCGAGCTGTTGCAGCTCAATGAGGTGTCCCCTTTGGCCCTCAAATCGAATCCGAGCTACGTCGAGTCGCTATTCGAGCAGTGGCTTTCGCTTCCCGATACTAATCGCCTGGTGACACAACTGCTAACTGAAGCAAAGGCAGGTAGGCCCCTGAATGTTCAGGGAAATTCTTCTAGTCCACATGCCACTGCAGGCAGTACTTTGCCTTCTATGTTTCCAGCAGGCAGTGCACCACCACTGTCACCAAGAAGTTCATCTGGATCCCCTCGCGTTATGAAACAGAGGATTGGTCCTTCTCATTTAGGTTCTCCCCTGAAATTAGTTAGCGAACCAGTTAAAGAAGTGATACCTCAGTTTTACTTTCTAAATGGTCGCCCGCCTCCAAATGAACTAAAAGATCAATGCTTATTTAGAATCAATCAGTTTTTCTCTGGCAACTCAGACGGACTGCAGATTCATGAATTTAAATCAGTTGCTAAGGATATCTGCAAGCTGCCCTCATTCTTCTCCACATCTCTTTTCAGAAAGATTGATGCTAACAGCACTGGATTTGTAACAAGGGAAACATTTATTGATTATTGGGTTGGTGGAAACATGTTGACGATGGATGTAGCTACTCAGATCTATTCGATCTTAAAGCAACCAGATCTCAAATACCTCACTCAGGATGACTTTAAACCTGTCCTTCGAGAACTTTTGGCAACTCATCCAGGGTTGGAGTTCTTACAGAGCACGCATGAGTTTCAGGAAAGATATGCTGAAACTGTAATATACAGAATATTTTACTACATAAATAGATCTGGGAACGGTCATCTCACACTCAGGGAGTTAAAGCGTGGAAACTTGATCGATGCAATGCAACATGCAGATGAAGAAGAGGACATCAACAAGGTTTTGAGGTACTTCTCTTATGAGCACTTTTATGTGATATACTGCAAGTTTTGGGAGCTGGATACAGATCATGATTTTCTGATCGATAAAGAGAACCTGATCAGATATGGTAACCATGCACTTACCTACCGGATTGTTGACAGAATATTTTCCCAGGTCGCAAGAAAGTTTACTAGCAAGGTTGAAGGAAAGATGGGATATCAAGATTTTGTCAACTTCATTCTCTCAGAGGAGGATAAATCTTCTCCGCCTAGCCTTGAGTTCTGGTTCAAGTGCATAGATTTGGATGGAAATGGAATTTTGACGCGGAATGAACTGCAGTTCTTTTATGAGGAGCAATTGCATAGAATGGAATGCATGGCCCAAGAACCTGTTCTGTTTGAGGATATTTTGTGCCAGATAATTGACATGATTGGACCAGAGAATGATAGCTACATCACACTCCATGATCTGAAAGGCTGTAAGCTTTCAGGAAGTGTTTTCAATATCCTTTTCAACCTTAACAAGTTCATGGCCTTCGAAACTCGTGATCCATTTCTCATTCGTCAGGAACGTGAGAATCCAACCTTGACAGAGTGGGATCGATTTGCACATAGAGAATACATCAGACTTTCAATGGAAGAAGATGTTGAAGATGCCTCCAATGGAAGTGCCGAAGTTTGGGACGAATCACTAGAGGCTCCCTTTTGA

Protein Analysis

540

Amino Acids

62.09

Weight (kDa)

5.0

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_13 PF17958 216 - 305 9.2e-33 EF-hand domain
EF-hand_7 PF13499 321 - 420 1.5e-09 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 170
AccII CGCG 2 cut(s) 309, 1237
AciI CCGC 4 cut(s) 26, 416, 1178, 1237
AclWI GGATC 4 cut(s) 294, 307, 1454, 1518
AcsI RAATTY 3 cut(s) 205, 500, 1227
AcuI CTGAAG 1 cut(s) 189
AcyI GRCGYC 2 cut(s) 29, 39
AfaI GTAC 2 cut(s) 238, 941
AfiI CCNNNNNNNGG 2 cut(s) 703, 1590
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 6 cut(s) 1115, 1201, 1414, 1426, 1545, 1562
AjnI CCWGG 3 cut(s) 147, 748, 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 1287, 1319
AluBI AGCT 8 cut(s) 46, 55, 96, 532, 653, 988, 1362, 1396
AluI AGCT 8 cut(s) 46, 55, 96, 532, 653, 988, 1362, 1396
Alw21I GWGCWC 3 cut(s) 271, 773, 957
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 4 cut(s) 294, 307, 1454, 1518
AoxI GGCC 4 cut(s) 75, 185, 1290, 1443
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 52, 532
ApoI RAATTY 3 cut(s) 205, 500, 1227
Asp700I GAANNNNTTC 3 cut(s) 208, 1078, 1302
AspS9I GGNCC 5 cut(s) 76, 186, 329, 1291, 1346
AsuHPI GGTGA 2 cut(s) 163, 273
AsuII TTCGAA 1 cut(s) 1449
AvaII GGWCC 2 cut(s) 329, 1346
BaeGI GKGCMC 1 cut(s) 271
BaeI ACNNNNGTAYC 2 cut(s) 377, 410
BamHI GGATCC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BauI CACGAG 1 cut(s) 1455
Bbv12I GWGCWC 3 cut(s) 271, 773, 957
BbvI GCAGC 2 cut(s) 64, 519
BccI CCATC 3 cut(s) 637, 1117, 1211
BciT130I CCWGG 3 cut(s) 149, 750, 1085
BciVI GTATCC 1 cut(s) 985
BclI TGATCA 1 cut(s) 1029
BfaI CTAG 4 cut(s) 213, 1104, 1182, 1604
BfmI CTRYAG 3 cut(s) 228, 488, 1247
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 985
BglII AGATCT 3 cut(s) 660, 685, 836
BisI GCNGC 3 cut(s) 27, 53, 533
BlsI GCNGC 3 cut(s) 28, 54, 534
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 3 cut(s) 149, 750, 1085
Bme18I GGWCC 2 cut(s) 329, 1346
BmgT120I GGNCC 5 cut(s) 76, 186, 329, 1291, 1346
BmiI GGNNCC 3 cut(s) 188, 301, 1611
BmrFI CCNGG 3 cut(s) 149, 750, 1085
BmsI GCATC 4 cut(s) 13, 562, 880, 1555
Bpu10I CCTNAGC 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 1449
BpuEI CTTGAG 1 cut(s) 1208
Bsa29I ATCGAT 3 cut(s) 888, 1014, 1513
BsaBI GATNNNNATC 2 cut(s) 141, 996
BsaHI GRCGYC 2 cut(s) 29, 39
BsaJI CCNNGG 2 cut(s) 749, 1083
BsaWI WCCGGW 1 cut(s) 1059
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 1590
Bse1I ACTGG 2 cut(s) 371, 589
Bse3DI GCAATG 1 cut(s) 900
Bse8I GATNNNNATC 2 cut(s) 141, 996
BseBI CCWGG 3 cut(s) 149, 750, 1085
BseCI ATCGAT 3 cut(s) 888, 1014, 1513
BseDI CCNNGG 2 cut(s) 749, 1083
BseGI GGATG 5 cut(s) 28, 652, 712, 745, 1222
BseJI GATNNNNATC 2 cut(s) 141, 996
BseLI CCNNNNNNNGG 2 cut(s) 703, 1590
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 6 cut(s) 404, 492, 671, 716, 874, 1170
BseNI ACTGG 2 cut(s) 371, 589
BseRI GAGGAG 2 cut(s) 1175, 1277
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 2 cut(s) 64, 519
Bsh1236I CGCG 2 cut(s) 309, 1237
BshFI GGCC 4 cut(s) 77, 187, 1292, 1445
BshVI ATCGAT 3 cut(s) 888, 1014, 1513
BsiHKAI GWGCWC 3 cut(s) 271, 773, 957
BsiSI CCGG 1 cut(s) 1060
BslFI GGGAC 2 cut(s) 52, 1607
BslI CCNNNNNNNGG 2 cut(s) 703, 1590
BsmFI GGGAC 2 cut(s) 52, 1607
BsmI GAATGC 1 cut(s) 1289
BsnI GGCC 4 cut(s) 77, 187, 1292, 1445
Bsp119I TTCGAA 1 cut(s) 1449
Bsp1286I GDGCHC 3 cut(s) 271, 773, 957
BspACI CCGC 4 cut(s) 26, 416, 1178, 1237
BspANI GGCC 4 cut(s) 77, 187, 1292, 1445
BspCNI CTCAG 6 cut(s) 403, 491, 670, 715, 873, 1169
BspDI ATCGAT 3 cut(s) 888, 1014, 1513
BspFNI CGCG 2 cut(s) 309, 1237
BspHI TCATGA 2 cut(s) 496, 1000
BspLI GGNNCC 3 cut(s) 188, 301, 1611
BspMAI CTGCAG 3 cut(s) 232, 492, 1251
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 4 cut(s) 294, 307, 1454, 1518
BspT104I TTCGAA 1 cut(s) 1449
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 2 cut(s) 371, 589
BssECI CCNNGG 2 cut(s) 749, 1083
BssNI GRCGYC 2 cut(s) 29, 39
BssSI CACGAG 1 cut(s) 1455
Bst2BI CACGAG 1 cut(s) 1455
Bst2UI CCWGG 3 cut(s) 149, 750, 1085
Bst4CI ACNGT 3 cut(s) 279, 805, 848
Bst6I CTCTTC 1 cut(s) 909
BstACI GRCGYC 2 cut(s) 29, 39
BstAPI GCANNNNNTGC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 1449
BstC8I GCNNGC 5 cut(s) 232, 262, 416, 530, 773
BstDEI CTNAG 7 cut(s) 390, 478, 516, 657, 702, 860, 1156
BstEII GGTNACC 1 cut(s) 1040
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 5 cut(s) 28, 652, 712, 745, 1222
BstFNI CGCG 2 cut(s) 309, 1237
BstMWI GCNNNNNNNGC 3 cut(s) 52, 115, 266
BstNI CCWGG 3 cut(s) 149, 750, 1085
BstNSI RCATGY 3 cut(s) 224, 637, 905
BstPI GGTNACC 1 cut(s) 1040
BstSCI CCNGG 3 cut(s) 147, 748, 1083
BstSFI CTRYAG 3 cut(s) 228, 488, 1247
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 2 cut(s) 309, 1237
BstV1I GCAGC 2 cut(s) 64, 519
BstX2I RGATCY 4 cut(s) 299, 660, 685, 836
BstYI RGATCY 4 cut(s) 299, 660, 685, 836
Bsu15I ATCGAT 3 cut(s) 888, 1014, 1513
BsuI GTATCC 1 cut(s) 985
BsuRI GGCC 4 cut(s) 77, 187, 1292, 1445
BsuTUI ATCGAT 3 cut(s) 888, 1014, 1513
BtsCI GGATG 5 cut(s) 28, 652, 712, 745, 1222
BtsI GCAGTG 3 cut(s) 125, 225, 271
BtsIMutI CAGTG 5 cut(s) 125, 225, 271, 275, 582
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 5 cut(s) 232, 262, 416, 530, 773
CciI TCATGA 2 cut(s) 496, 1000
Cfr13I GGNCC 5 cut(s) 76, 186, 329, 1291, 1346
ClaI ATCGAT 3 cut(s) 888, 1014, 1513
CseI GACGC 3 cut(s) 18, 47, 1243
Csp6I GTAC 2 cut(s) 237, 940
CviQI GTAC 2 cut(s) 237, 940
DdeI CTNAG 7 cut(s) 390, 478, 516, 657, 702, 860, 1156
DraI TTTAAA 2 cut(s) 505, 715
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
EciI GGCGGA 1 cut(s) 1167
Eco32I GATATC 2 cut(s) 523, 1130
Eco47I GGWCC 2 cut(s) 329, 1346
Eco57I CTGAAG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 1040
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 1040
EcoRII CCWGG 3 cut(s) 147, 748, 1083
EcoRV GATATC 2 cut(s) 523, 1130
EcoT22I ATGCAT 1 cut(s) 1289
FaqI GGGAC 2 cut(s) 52, 1607
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 1 cut(s) 1029
Fnu4HI GCNGC 3 cut(s) 27, 53, 533
FokI GGATG 5 cut(s) 35, 659, 719, 732, 1229
Fsp4HI GCNGC 3 cut(s) 27, 53, 533
FspBI CTAG 4 cut(s) 213, 1104, 1182, 1604
GluI GCNGC 3 cut(s) 27, 53, 533
HaeIII GGCC 4 cut(s) 77, 187, 1292, 1445
HapII CCGG 1 cut(s) 1060
HgaI GACGC 3 cut(s) 18, 47, 1243
Hin1I GRCGYC 2 cut(s) 29, 39
HincII GTYRAC 3 cut(s) 639, 1069, 1144
HindII GTYRAC 3 cut(s) 639, 1069, 1144
HindIII AAGCTT 1 cut(s) 1394
HinfI GANTC 6 cut(s) 88, 104, 453, 493, 1489, 1598
HpaII CCGG 1 cut(s) 1060
HphI GGTGA 2 cut(s) 163, 273
Hpy166II GTNNAC 6 cut(s) 218, 269, 639, 1069, 1101, 1144
Hpy188I TCNGA 9 cut(s) 93, 481, 563, 660, 1011, 1034, 1159, 1383, 1538
Hpy8I GTNNAC 6 cut(s) 218, 269, 639, 1069, 1101, 1144
Hpy99I CGWCG 2 cut(s) 34, 104
HpyAV CCTTC 5 cut(s) 255, 342, 734, 1109, 1456
HpyCH4III ACNGT 3 cut(s) 279, 805, 848
HpyCH4IV ACGT 2 cut(s) 99, 1483
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 115, 266
HpyF3I CTNAG 7 cut(s) 390, 478, 516, 657, 702, 860, 1156
HpySE526I ACGT 2 cut(s) 99, 1483
Hsp92I GRCGYC 2 cut(s) 29, 39
Ksp22I TGATCA 1 cut(s) 1029
LmnI GCTCC 3 cut(s) 985, 1264, 1615
Lsp1109I GCAGC 2 cut(s) 64, 519
LweI GCATC 4 cut(s) 13, 562, 880, 1555
MaeI CTAG 4 cut(s) 213, 1104, 1182, 1604
MaeII ACGT 2 cut(s) 99, 1483
MaeIII GTNAC 4 cut(s) 151, 279, 592, 1040
MboII GAAGA 8 cut(s) 201, 535, 923, 926, 1164, 1562, 1565, 1574
MfeI CAATTG 1 cut(s) 1268
MflI RGATCY 4 cut(s) 299, 660, 685, 836
MhlI GDGCHC 3 cut(s) 271, 773, 957
MluCI AATT 6 cut(s) 205, 356, 500, 1227, 1268, 1332
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 735, 1517
Mph1103I ATGCAT 1 cut(s) 1289
MroXI GAANNNNTTC 3 cut(s) 208, 1078, 1302
MseI TTAA 6 cut(s) 375, 504, 674, 714, 869, 1431
MslI CAYNNNNRTG 2 cut(s) 906, 960
MspI CCGG 1 cut(s) 1060
MspR9I CCNGG 3 cut(s) 149, 750, 1085
MunI CAATTG 1 cut(s) 1268
Mva1269I GAATGC 1 cut(s) 1289
MvaI CCWGG 3 cut(s) 149, 750, 1085
MvnI CGCG 2 cut(s) 309, 1237
MwoI GCNNNNNNNGC 3 cut(s) 52, 115, 266
NlaIV GGNNCC 3 cut(s) 188, 301, 1611
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 151, 279
NsiI ATGCAT 1 cut(s) 1289
NspI RCATGY 3 cut(s) 224, 637, 905
NspV TTCGAA 1 cut(s) 1449
PagI TCATGA 2 cut(s) 496, 1000
PciI ACATGT 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 1480
PctI GAATGC 1 cut(s) 1289
PdmI GAANNNNTTC 3 cut(s) 208, 1078, 1302
PfeI GAWTC 5 cut(s) 88, 453, 493, 1489, 1598
PkrI GCNGC 3 cut(s) 28, 54, 534
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PscI ACATGT 1 cut(s) 633
Psp6I CCWGG 3 cut(s) 147, 748, 1083
PspEI GGTNACC 1 cut(s) 1040
PspGI CCWGG 3 cut(s) 147, 748, 1083
PspN4I GGNNCC 3 cut(s) 188, 301, 1611
PspPI GGNCC 5 cut(s) 76, 186, 329, 1291, 1346
PstI CTGCAG 3 cut(s) 232, 492, 1251
PsuI RGATCY 4 cut(s) 299, 660, 685, 836
RsaI GTAC 2 cut(s) 238, 941
RsaNI GTAC 2 cut(s) 237, 940
RseI CAYNNNNRTG 2 cut(s) 906, 960
SaqAI TTAA 6 cut(s) 375, 504, 674, 714, 869, 1431
SatI GCNGC 3 cut(s) 27, 53, 533
Sau96I GGNCC 5 cut(s) 76, 186, 329, 1291, 1346
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 149, 750, 1085
SduI GDGCHC 3 cut(s) 271, 773, 957
SfaNI GCATC 4 cut(s) 13, 562, 880, 1555
SfcI CTRYAG 3 cut(s) 228, 488, 1247
SfuI TTCGAA 1 cut(s) 1449
SinI GGWCC 2 cut(s) 329, 1346
SmiI ATTTAAAT 1 cut(s) 505
SmiMI CAYNNNNRTG 2 cut(s) 906, 960
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 6 cut(s) 205, 356, 500, 1227, 1268, 1332
SsiI CCGC 4 cut(s) 26, 416, 1178, 1237
SspI AATATT 2 cut(s) 819, 1077
SspMI CTAG 4 cut(s) 213, 1104, 1182, 1604
StyD4I CCNGG 3 cut(s) 147, 748, 1083
SwaI ATTTAAAT 1 cut(s) 505
TaaI ACNGT 3 cut(s) 279, 805, 848
TaiI ACGT 2 cut(s) 102, 1486
TaqI TCGA 9 cut(s) 86, 102, 114, 668, 727, 888, 1014, 1449, 1513
TasI AATT 6 cut(s) 205, 356, 500, 1227, 1268, 1332
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 5 cut(s) 88, 453, 493, 1489, 1598
Tru1I TTAA 6 cut(s) 375, 504, 674, 714, 869, 1431
Tru9I TTAA 6 cut(s) 375, 504, 674, 714, 869, 1431
TscAI CASTG 5 cut(s) 125, 232, 271, 282, 589
TseFI GTSAC 2 cut(s) 151, 279
TseI GCWGC 2 cut(s) 52, 532
Tsp45I GTSAC 2 cut(s) 151, 279
TspDTI ATGAA 9 cut(s) 282, 329, 441, 485, 513, 924, 1138, 1257, 1429
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 5 cut(s) 125, 232, 271, 282, 589
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 329, 1346
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 3 cut(s) 205, 500, 1227
XceI RCATGY 3 cut(s) 224, 637, 905
XmnI GAANNNNTTC 3 cut(s) 208, 1078, 1302
XspI CTAG 4 cut(s) 213, 1104, 1182, 1604
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.