Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009629.1

Orthogroup ID

OG0006488

Physical Location & Seq

Genomic Coordinates Reverse (-)

19421 .. 23787

Gene Structure 4367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009629.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggatgcttttgccttctcagattgggcaaatttgcccgagcaactattggattcaatttcggaaagattattatcatcatccgattatctacgattcagtgcggtaacattaataaatccattccccaagtcaaaggatagggcaggaagagaaaatttagtcattcgtcttccccaactaaaccctccagagctatctatagaacatctcaaaagagataaatgggttaaagattgtaactattatgtcgtaaaggctataattacggcggacccgatattaaatgcaaatgagtgcattgttgttctaatatacttggaacgatctcaaatggcgttcattagaccgggtaatgacacaacatggacttatctacctacaaaaatggatagaattgtagatgttattcaacgggaagatgataagttttatgccattggggcacgagctcttcgaacgttcagtattacgaaatatcttgtggactcaaatgggaaagatttgttgatggttgatagggattgttattgggaagatcccgacaagaatgagagctatattacactccgtgacctgaaagtttgtaagctttcaggaagcgttttcaatattctttgcaaccttaacaagttcatggcctttgaaactcgtgatccgtttctcattcgtcaggaacgtgagaatccaaccttgacagagtgggatcggtttgcacatagagaagatatcaggctttcaagggaagaagatgttgaagatgcttccaatggcagtgcagaagtttgggatgaatcacttgaggctgccttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7

Protein Analysis

271

Amino Acids

31.55

Weight (kDa)

4.82

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54450 AT5G28850 AT5G28850 AT5G28900
fragaria_vesca	FvH4_6g01930
malus_domestica	MD04G1230600.v1.1 MD12G1249000.v1.1
prunus_persica	Prupe.6G350400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449671 RchiOBHm_Chr3g0449721
rosa_laevigata	RLG00000025807 RLG00000025809
rosa_multiflora	Rmu_sc0009629.1_g000003 Rmu_sc0009629.1_g000010 Rmu_sc0010999.1_g000003
rosa_roxburghii	Rroxscaffold_6G00427570 Rroxscaffold_6G00427590
rosa_rugosa	Rorug02G0622700
rosa_samantha	Rh3AG020800 Rh3AG021100 Rh3BG021500 Rh3BG021800 Rh3CG020000 Rh3DG021300 Rh3DG021600
rosa_wichuraiana	Rw3G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 272
AclI	AACGTT	1 cut(s)	461
AclWI	GGATC	3 cut(s)	533, 650, 714
AcsI	RAATTY	2 cut(s)	31, 157
AdeI	CACNNNGTG	1 cut(s)	572
AgsI	TTSAA	6 cut(s)	57, 413, 610, 647, 741, 758
AluBI	AGCT	4 cut(s)	196, 452, 558, 592
AluI	AGCT	4 cut(s)	196, 452, 558, 592
Alw21I	GWGCWC	1 cut(s)	454
AlwI	GGATC	3 cut(s)	533, 650, 714
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	2 cut(s)	31, 157
AseI	ATTAAT	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	351
AsuII	TTCGAA	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	2 cut(s)	447, 651
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	1 cut(s)	505
BceAI	ACGGC	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	1 cut(s)	807
BlsI	GCNGC	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	73
BseGI	GGATG	3 cut(s)	10, 80, 796
BseJI	GATNNNNATC	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	793
BsgI	GTGCAG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	350
BsnI	GGCC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	448, 454
Bsp143I	GATC	4 cut(s)	326, 538, 655, 706
BspACI	CCGC	2 cut(s)	104, 272
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	3 cut(s)	533, 650, 714
BspQI	GCTCTTC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	457
BssMI	GATC	4 cut(s)	326, 538, 655, 706
BssSI	CACGAG	2 cut(s)	447, 651
Bst2BI	CACGAG	2 cut(s)	447, 651
Bst6I	CTCTTC	2 cut(s)	145, 459
BstBI	TTCGAA	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	10, 80, 796
BstKTI	GATC	4 cut(s)	329, 541, 658, 709
BstMBI	GATC	4 cut(s)	326, 538, 655, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	793
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	641
BtsCI	GGATG	3 cut(s)	10, 80, 796
BtsI	GCAGTG	1 cut(s)	781
BtsIMutI	CAGTG	2 cut(s)	106, 781
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	2 cut(s)	366, 637
CviJI	RGCY	8 cut(s)	196, 260, 452, 558, 592, 641, 736, 806
CviKI_1	RGCY	8 cut(s)	196, 260, 452, 558, 592, 641, 736, 806
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	4 cut(s)	328, 540, 657, 708
DpnII	GATC	4 cut(s)	326, 538, 655, 706
DraIII	CACNNNGTG	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	145, 459
EarI	CTCTTC	2 cut(s)	145, 459
EciI	GGCGGA	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	2 cut(s)	369, 640
FaiI	YATR	9 cut(s)	203, 249, 263, 316, 367, 435, 561, 638, 720
FatI	CATG	2 cut(s)	365, 636
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	3 cut(s)	17, 67, 803
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	807
GluI	GCNGC	1 cut(s)	807
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	2 cut(s)	369, 640
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	53, 96, 488, 685, 794
HpaII	CCGG	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	3 cut(s)	22, 64, 85
Hpy188III	TCNNGA	5 cut(s)	191, 542, 597, 653, 674
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	461, 679
HpyCH4V	TGCA	5 cut(s)	290, 300, 621, 716, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	2 cut(s)	461, 679
Hsp92II	CATG	2 cut(s)	369, 640
Kzo9I	GATC	4 cut(s)	326, 538, 655, 706
LguI	GCTCTTC	1 cut(s)	459
LpnPI	CCDG	7 cut(s)	132, 204, 363, 582, 590, 659, 718
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	1 cut(s)	751
MaeII	ACGT	2 cut(s)	461, 679
MaeIII	GTNAC	3 cut(s)	106, 239, 572
MalI	GATC	4 cut(s)	328, 540, 657, 708
MboI	GATC	4 cut(s)	326, 538, 655, 706
MboII	GAAGA	9 cut(s)	162, 164, 431, 446, 548, 737, 758, 761, 770
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	448, 454
MluCI	AATT	5 cut(s)	31, 57, 157, 264, 396
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	2 cut(s)	198, 796
MseI	TTAA	5 cut(s)	113, 231, 284, 627, 814
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	4 cut(s)	326, 538, 655, 706
NlaIII	CATG	2 cut(s)	369, 640
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	572
NspV	TTCGAA	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	3 cut(s)	275, 454, 676
PfeI	GAWTC	4 cut(s)	53, 96, 685, 794
PkrI	GCNGC	1 cut(s)	808
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	454
Psp1406I	AACGTT	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	538
SacI	GAGCTC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	5 cut(s)	113, 231, 284, 627, 814
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	4 cut(s)	326, 538, 655, 706
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	448, 454
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	457
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	5 cut(s)	31, 57, 157, 264, 396
SsiI	CCGC	2 cut(s)	104, 272
SspI	AATATT	1 cut(s)	613
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	349
TaiI	ACGT	2 cut(s)	464, 682
TaqI	TCGA	1 cut(s)	457
TasI	AATT	5 cut(s)	31, 57, 157, 264, 396
TfiI	GAWTC	4 cut(s)	53, 96, 685, 794
Tru1I	TTAA	5 cut(s)	113, 231, 284, 627, 814
Tru9I	TTAA	5 cut(s)	113, 231, 284, 627, 814
TscAI	CASTG	2 cut(s)	106, 781
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	1 cut(s)	806
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	331, 625, 807
TspGWI	ACGGA	2 cut(s)	560, 648
TspRI	CASTG	2 cut(s)	106, 781
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	113
XapI	RAATTY	2 cut(s)	31, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.