AT1G55280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013150
Physical Location & Seq
Reverse (-)
20622930 .. 20624794
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55280.1

Sequence Viewer

Length: 1173 bp
ATGGCGACGGAATCAATTTTTCTCAAGCCTGTATCTTTCGCATGGTTTACGAAAAACCCATTGAATCAATTTCATAAAAGAAGACAACTTTCCTATCGAATTCGTCGTTTTCGATTCGGTGTAATTTGCTCCAAGTCATCTGATTATCAAGATTTCCAGAGTTATGCAAGACCTTTGCGTCTCTTACCAGCAGAAGAAGTGAAAGTTTTTAGAGGGAATCCATCTTTCACTGTGAGCGAATCTCGATCTCTTTATAAGGTTAAGCTACAGACAAGTAATTTGTTTGGTTCAGGGATTAGTGATATGAATGCTAGAGTTCTTATATGCTTGATAGACGAAAAGGGCGATTCGGTATTACAGACAATACCTCCAAATTTGTCATCTTTGGATCCAGAGGTTGTGGAAAATGGTGAAAGCTTCAGGTTTCAGAGGGGCTCTCTTGATGAATTCTCATTTGAAGGACCGAAACTCGGCAAAATCAGAGCTTTTTGGATTGGTCTTGAGTCTGGTCAATGGAGAGTTGGAAGAGTGAGCTTGTGGGTGGTTAATCCTCGTGGTAAAGAAACCGAGGCAAAAACCTTTTGTTACCGATATGATTTTGAAGTTGATGAACTCTTGCTTGGAGAGAGCAGTGACCTATCAATGGTGGAACTTAGACCTAGCCGTATCACTGAACTCGCTGACTCCGATCAAATCTCTTCGTCTTCAGCTCTGAATCTTGACCGTACTATGGTTTCCAATGAGGAAAGCATGGAAGAATACGCAAACTTGAAACTCTCTCTGCTACTCTATGATGCGGTTCTCATCCTTCTTGGAAGTTTGGTCTTTTCCTTCTCACTTGGTGAAAACTCCGCCATTGCTTTCTTCTTCGGTGGAACTATGGGATTTCTCTACTTATTGCTATTACAGAGATCAGTTGATGAACTGCAAGTACCGGGATCTTCTTCTTCCGAAAACTCCAATCAGATACTCAGCGGGGGACTCAAGATTCCGGTTTTGAGCCTTGCATTGGCCATAGGATTAACGGTTTTGGCCATGAGAGGACACATTGGAGGAGAGATGACTGCATTTGCAGTCACACCAAAAGAGATAGTGGTGGGGACTTTGGGGTTTCTTGTATGCAAAGTAGCCGTTATTTTGGCTGCCTTTAAGCCCTTGAAGGATGGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

43.3

Weight (kDa)

5.94

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7755 PF24938 83 - 224 6.3e-54 Domain of unknown function (DUF7755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55280 AT1G55280
fragaria_vesca FvH4_3g45230
malus_domestica MD03G1007100.v1.1
prunus_persica Prupe.6G006700_v2.0.a1
pyrus_communis pycom03g00720
rosa_chinensis RchiOBHm_Chr5g0082841
rosa_laevigata RLG00000036994
rosa_multiflora Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii Rroxscaffold_1G00001590
rosa_rugosa Rorug05G0480300
rosa_samantha Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana Rw5G049800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 177
AciI CCGC 3 cut(s) 797, 852, 975
AclWI GGATC 3 cut(s) 383, 396, 946
AcoI YGGCCR 2 cut(s) 1011, 1032
AcsI RAATTY 3 cut(s) 99, 373, 446
AcuI CTGAAG 2 cut(s) 403, 690
AdeI CACNNNGTG 1 cut(s) 842
AfaI GTAC 2 cut(s) 727, 933
AfiI CCNNNNNNNGG 4 cut(s) 470, 643, 730, 1009
AgsI TTSAA 5 cut(s) 64, 458, 602, 772, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AluBI AGCT 5 cut(s) 265, 417, 485, 534, 710
AluI AGCT 5 cut(s) 265, 417, 485, 534, 710
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 383, 396, 946
AoxI GGCC 2 cut(s) 1011, 1032
ApeKI GCWGC 1 cut(s) 1142
ApoI RAATTY 3 cut(s) 99, 373, 446
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspS9I GGNCC 2 cut(s) 461, 1166
AsuC2I CCSGG 1 cut(s) 936
AsuHPI GGTGA 2 cut(s) 422, 854
AvaII GGWCC 2 cut(s) 461, 1166
BalI TGGCCA 2 cut(s) 1013, 1034
BamHI GGATCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 437
BauI CACGAG 1 cut(s) 552
BbsI GAAGAC 2 cut(s) 88, 696
BbvI GCAGC 1 cut(s) 1129
BccI CCATC 2 cut(s) 229, 1157
BceAI ACGGC 2 cut(s) 648, 1115
BcnI CCSGG 1 cut(s) 936
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 312, 660
BfmI CTRYAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 1143
BlsI GCNGC 1 cut(s) 1144
Bme1390I CCNGG 1 cut(s) 936
Bme18I GGWCC 2 cut(s) 461, 1166
BmgT120I GGNCC 2 cut(s) 461, 1166
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 936
BmsI GCATC 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 88, 696
BplI GAGNNNNNCTC 4 cut(s) 226, 258, 421, 453
BpuEI CTTGAG 3 cut(s) 8, 521, 968
BpuMI CCSGG 1 cut(s) 936
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 991
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 4 cut(s) 470, 643, 730, 1009
Bse3DI GCAATG 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 2 cut(s) 804, 1168
BseLI CCNNNNNNNGG 4 cut(s) 470, 643, 730, 1009
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 1 cut(s) 985
BseRI GAGGAG 1 cut(s) 1068
BseXI GCAGC 1 cut(s) 1129
BshFI GGCC 2 cut(s) 1013, 1034
BsiSI CCGG 2 cut(s) 935, 992
BslFI GGGAC 2 cut(s) 993, 1114
BslI CCNNNNNNNGG 4 cut(s) 470, 643, 730, 1009
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 993, 1114
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 1013, 1034
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 5 cut(s) 245, 388, 688, 911, 938
BspACI CCGC 3 cut(s) 797, 852, 975
BspANI GGCC 2 cut(s) 1013, 1034
BspCNI CTCAG 1 cut(s) 984
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 3 cut(s) 383, 396, 946
BsrDI GCAATG 1 cut(s) 855
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 5 cut(s) 245, 388, 688, 911, 938
BssSI CACGAG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 232, 725, 1027
Bst6I CTCTTC 2 cut(s) 520, 703
BstDEI CTNAG 2 cut(s) 653, 971
BstF5I GGATG 2 cut(s) 804, 1168
BstKTI GATC 5 cut(s) 248, 391, 691, 914, 941
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 5 cut(s) 245, 388, 688, 911, 938
BstSCI CCNGG 1 cut(s) 934
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 1129
BstV2I GAAGAC 2 cut(s) 88, 696
BstX2I RGATCY 2 cut(s) 388, 938
BstYI RGATCY 2 cut(s) 388, 938
BsuRI GGCC 2 cut(s) 1013, 1034
BtsCI GGATG 2 cut(s) 804, 1168
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 3 cut(s) 228, 637, 669
Cfr13I GGNCC 2 cut(s) 461, 1166
CseI GACGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 726, 932
CviAII CATG 3 cut(s) 42, 751, 1036
CviQI GTAC 2 cut(s) 726, 932
DdeI CTNAG 2 cut(s) 653, 971
DpnI GATC 5 cut(s) 247, 390, 690, 913, 940
DpnII GATC 5 cut(s) 245, 388, 688, 911, 938
DraIII CACNNNGTG 1 cut(s) 842
DrdI GACNNNNNNGTC 1 cut(s) 177
DseDI GACNNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 2 cut(s) 1011, 1032
Eam1104I CTCTTC 2 cut(s) 520, 703
EarI CTCTTC 2 cut(s) 520, 703
EciI GGCGGA 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 461, 1166
Eco57I CTGAAG 2 cut(s) 403, 690
EcoRI GAATTC 2 cut(s) 99, 446
EcoT38I GRGCYC 1 cut(s) 437
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 3 cut(s) 45, 754, 1039
FaqI GGGAC 2 cut(s) 993, 1114
FatI CATG 3 cut(s) 41, 750, 1035
FauI CCCGC 1 cut(s) 968
Fnu4HI GCNGC 1 cut(s) 1143
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 1 cut(s) 1143
FspBI CTAG 2 cut(s) 312, 660
GluI GCNGC 1 cut(s) 1143
HaeIII GGCC 2 cut(s) 1013, 1034
HapII CCGG 2 cut(s) 935, 992
HgaI GACGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 45, 754, 1039
HindIII AAGCTT 1 cut(s) 415
HpaII CCGG 2 cut(s) 935, 992
HphI GGTGA 2 cut(s) 422, 854
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 7 cut(s) 142, 429, 482, 688, 714, 952, 966
Hpy188III TCNNGA 8 cut(s) 149, 157, 243, 392, 440, 500, 719, 985
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 2 cut(s) 10, 108
HpyAV CCTTC 4 cut(s) 452, 818, 841, 1153
HpyCH4III ACNGT 3 cut(s) 232, 725, 1027
HpyCH4V TGCA 6 cut(s) 167, 928, 1007, 1067, 1073, 1122
HpyF3I CTNAG 2 cut(s) 653, 971
Hsp92II CATG 3 cut(s) 45, 754, 1039
Kzo9I GATC 5 cut(s) 245, 388, 688, 911, 938
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 9 cut(s) 42, 170, 201, 276, 405, 406, 492, 948, 1005
Lsp1109I GCAGC 1 cut(s) 1129
LweI GCATC 1 cut(s) 784
MaeI CTAG 2 cut(s) 312, 660
MaeIII GTNAC 3 cut(s) 584, 632, 1075
MalI GATC 5 cut(s) 247, 390, 690, 913, 940
MboI GATC 5 cut(s) 245, 388, 688, 911, 938
MflI RGATCY 2 cut(s) 388, 938
MhlI GDGCHC 1 cut(s) 437
MlsI TGGCCA 2 cut(s) 1013, 1034
MluCI AATT 7 cut(s) 15, 68, 99, 123, 277, 373, 446
MluNI TGGCCA 2 cut(s) 1013, 1034
MlyI GAGTC 3 cut(s) 512, 677, 975
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 9 cut(s) 206, 378, 388, 423, 561, 562, 736, 1034, 1046
Mox20I TGGCCA 2 cut(s) 1013, 1034
MscI TGGCCA 2 cut(s) 1013, 1034
MseI TTAA 5 cut(s) 261, 546, 1022, 1149, 1171
Msp20I TGGCCA 2 cut(s) 1013, 1034
MspA1I CMGCKG 1 cut(s) 975
MspI CCGG 2 cut(s) 935, 992
MspR9I CCNGG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 313
NciI CCSGG 1 cut(s) 936
NdeII GATC 5 cut(s) 245, 388, 688, 911, 938
NlaIII CATG 3 cut(s) 45, 754, 1039
NlaIV GGNNCC 1 cut(s) 390
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 2 cut(s) 632, 1075
PcsI WCGNNNNNNNCGW 4 cut(s) 103, 109, 342, 684
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 8 cut(s) 11, 64, 114, 217, 239, 347, 715, 988
PkrI GCNGC 1 cut(s) 1144
PleI GAGTC 3 cut(s) 511, 677, 975
PpsI GAGTC 3 cut(s) 511, 677, 975
PsiI TTATAA 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 2 cut(s) 461, 1166
PsrI GAACNNNNNNTAC 2 cut(s) 915, 947
PsuI RGATCY 2 cut(s) 388, 938
RsaI GTAC 2 cut(s) 727, 933
RsaNI GTAC 2 cut(s) 726, 932
SaqAI TTAA 5 cut(s) 261, 546, 1022, 1149, 1171
SatI GCNGC 1 cut(s) 1143
Sau3AI GATC 5 cut(s) 245, 388, 688, 911, 938
Sau96I GGNCC 2 cut(s) 461, 1166
SchI GAGTC 3 cut(s) 512, 677, 975
ScrFI CCNGG 1 cut(s) 936
SduI GDGCHC 1 cut(s) 437
SfaNI GCATC 1 cut(s) 784
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 2 cut(s) 461, 1166
SmlI CTYRAG 3 cut(s) 23, 500, 983
SmoI CTYRAG 3 cut(s) 23, 500, 983
Sse9I AATT 7 cut(s) 15, 68, 99, 123, 277, 373, 446
SsiI CCGC 3 cut(s) 797, 852, 975
SspMI CTAG 2 cut(s) 312, 660
StyD4I CCNGG 1 cut(s) 934
TaaI ACNGT 3 cut(s) 232, 725, 1027
TaqI TCGA 3 cut(s) 97, 112, 244
TaqII GACCGA 1 cut(s) 478
TasI AATT 7 cut(s) 15, 68, 99, 123, 277, 373, 446
TfiI GAWTC 8 cut(s) 11, 64, 114, 217, 239, 347, 715, 988
Tru1I TTAA 5 cut(s) 261, 546, 1022, 1149, 1171
Tru9I TTAA 5 cut(s) 261, 546, 1022, 1149, 1171
TscAI CASTG 3 cut(s) 235, 637, 676
TseFI GTSAC 2 cut(s) 632, 1075
TseI GCWGC 1 cut(s) 1142
Tsp45I GTSAC 2 cut(s) 632, 1075
TspDTI ATGAA 5 cut(s) 62, 320, 459, 624, 936
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 235, 637, 676
VpaK11BI GGWCC 2 cut(s) 461, 1166
XapI RAATTY 3 cut(s) 99, 373, 446
XspI CTAG 2 cut(s) 312, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.