Prupe.6G006700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013150
Physical Location & Seq
Forward (+)
567840 .. 570602
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G006700.1

Sequence Viewer

Length: 1320 bp
ATGAGACTGCCGAGTGCCACAGAGAGTCTATACAAACTCTATTTCATTGTGTCTCAGCGTGTATCCGAAACTGCAGCAATGGAGTCCATTTCTCTGACGCATGCATTCTCTGCAACAAATCACAGCTTTCGATGGAGAAGAAAAAGGAACCCAGAAAAGCCATTTCACAGCCAAAGGTTTCACCTTCACAAACCAACTGGGCGACTTCAGAAAATCAATTCCAAACACTCGGATTTCCAAGATTTAAAGGGCTATGCAAAGCCTTCACGTCTCTTGCCAGCTACAGAAGTGAAAGTCTGCACAGATAACTCAGTGGTAAAGGCTTTCTCATCTTTAAGTGATGATGGATCTCAGTCTCTATGTAAGGTTAAGTTAGGTACTAGTAATGTTTATGGCTCAAGTCTCTCTGACTTGAATGCTGGAATCCTCCTGTGTGTGATAGACGAAAACGGTGACTCCATATTACAGAGGATGCCCTCGAGTTTGATAACAGATCATTCTACAGAGTCAGAGGATGGCATACTTCACTTTCAACGAGGTTCTGTTGATGAGTTCACCTTTGAGGGACCTAAACTTGGAAAAGTTGAAGCCGTTTGGATCAGTCTTGAATCAGGCCAATGGAGGTTAGGAAGTGTGAGCTTGACCGTTATTTGTGGGCAACAAAGTTCTTTGGAGGAAAAAGATGGAGAAAAACTTCAGTATATTGGTTTCAATTACAACTTTGAGGTTGATGATATCTTGCTGGGGGAGGGAAGTGATAGTTCCATGGTGGAACTTAGACCTTGCCTTGTCACCAAGCTATCTGGGGTTGACCCTTTCACTGTCTTCAATAAAAGCATCCCTGAATCAACTATGCTTGTGGGCCGTGGGATATCAAACGAGGAAACCATGAGAGAATATGAAGATTTGAAGTTATCTTTGCTACTTTACGATGCCATGCTGATCTTTGTTGGTACATCAGTCGCATCCTTCTCAGCGGGGGAAGAGGTGAGTTTTGCGTTTTTAACTGGTGGGATTGGCGGCTTCTTGTATCTGCTGCTACTGCAAAGGTCTGTTGATGGATTACCTGCTCCAGAATTGACTTCCAGTAACACAGGAAGGCCCAACCAAATCTTTGGAGGATCTAAGGGCCGAATATTTGTTCTTGCATTGGCGATTGGTTTTGCTTTATTCACAGTGAAGTATGGCTCGGGGGATGCCCCCATGGAATTCACACCTAAGGAACTCATGGCTGGGATGATCGGATTTCTTGCATGTAAAGTTGCTGTGGTGTTGGCAGCAGTTAAGCCCATGCGAATTAGTCTAAAGATAAACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

48.1

Weight (kDa)

5.98

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55280 AT1G55280
fragaria_vesca FvH4_3g45230
malus_domestica MD03G1007100.v1.1
prunus_persica Prupe.6G006700_v2.0.a1
pyrus_communis pycom03g00720
rosa_chinensis RchiOBHm_Chr5g0082841
rosa_laevigata RLG00000036994
rosa_multiflora Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii Rroxscaffold_1G00001590
rosa_rugosa Rorug05G0480300
rosa_samantha Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana Rw5G049800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1075
AciI CCGC 2 cut(s) 977, 1020
AclWI GGATC 3 cut(s) 355, 605, 1129
AcsI RAATTY 1 cut(s) 1208
AcuI CTGAAG 2 cut(s) 191, 680
AfaI GTAC 2 cut(s) 379, 955
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 7 cut(s) 415, 533, 587, 608, 712, 829, 910
AhlI ACTAGT 1 cut(s) 380
AjiI CACGTC 1 cut(s) 269
AluBI AGCT 4 cut(s) 126, 281, 639, 799
AluI AGCT 4 cut(s) 126, 281, 639, 799
Alw26I GTCTC 4 cut(s) 57, 275, 360, 407
AlwI GGATC 3 cut(s) 355, 605, 1129
Ama87I CYCGRG 2 cut(s) 478, 1189
AoxI GGCC 4 cut(s) 613, 862, 1100, 1129
ApeKI GCWGC 3 cut(s) 74, 1036, 1277
ApoI RAATTY 1 cut(s) 1208
Asp700I GAANNNNTTC 1 cut(s) 693
AspS9I GGNCC 4 cut(s) 566, 862, 1101, 1129
AsuHPI GGTGA 5 cut(s) 173, 464, 547, 784, 1000
AvaI CYCGRG 2 cut(s) 478, 1189
AvaII GGWCC 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 1218
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BbsI GAAGAC 1 cut(s) 817
BbvI GCAGC 3 cut(s) 86, 1023, 1289
BccI CCATC 5 cut(s) 126, 338, 509, 677, 1052
BceAI ACGGC 2 cut(s) 575, 849
BciVI GTATCC 1 cut(s) 73
BcoDI GTCTC 4 cut(s) 57, 275, 360, 407
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 3 cut(s) 72, 282, 501
BfuAI ACCTGC 1 cut(s) 1075
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 4 cut(s) 75, 1021, 1037, 1278
BlsI GCNGC 4 cut(s) 76, 1022, 1038, 1279
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 2 cut(s) 478, 1189
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 4 cut(s) 566, 862, 1101, 1129
BmiI GGNNCC 2 cut(s) 149, 567
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 5 cut(s) 462, 846, 922, 974, 1186
BmuI ACTGGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 817
BpmI CTGGAG 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 765, 865, 1203
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 3 cut(s) 202, 1012, 1086
Bse21I CCTNAGG 1 cut(s) 1218
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 3 cut(s) 765, 865, 1203
BseGI GGATG 6 cut(s) 477, 520, 837, 965, 1201, 1242
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 68, 324, 365, 987
BseNI ACTGG 3 cut(s) 202, 1012, 1086
BseXI GCAGC 3 cut(s) 86, 1023, 1289
BseYI CCCAGC 2 cut(s) 742, 1232
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 4 cut(s) 615, 864, 1102, 1131
BsiHKCI CYCGRG 2 cut(s) 478, 1189
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 4 cut(s) 57, 275, 360, 407
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 2 cut(s) 104, 421
BsnI GGCC 4 cut(s) 615, 864, 1102, 1131
BsoBI CYCGRG 2 cut(s) 478, 1189
Bsp143I GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
Bsp19I CCATGG 2 cut(s) 765, 1203
BspACI CCGC 2 cut(s) 977, 1020
BspANI GGCC 4 cut(s) 615, 864, 1102, 1131
BspCNI CTCAG 4 cut(s) 67, 323, 364, 986
BspLI GGNNCC 2 cut(s) 149, 567
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 3 cut(s) 355, 605, 1129
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 3 cut(s) 202, 1012, 1086
BssECI CCNNGG 3 cut(s) 765, 865, 1203
BssMI GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
BssT1I CCWWGG 2 cut(s) 765, 1203
Bst4CI ACNGT 4 cut(s) 452, 646, 823, 1177
Bst6I CTCTTC 1 cut(s) 978
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 102, 279
BstDEI CTNAG 7 cut(s) 54, 310, 351, 776, 973, 1125, 1218
BstDSI CCRYGG 3 cut(s) 765, 865, 1203
BstF5I GGATG 6 cut(s) 477, 520, 837, 965, 1201, 1242
BstKTI GATC 6 cut(s) 350, 496, 600, 945, 1124, 1242
BstMAI GTCTC 4 cut(s) 57, 275, 360, 407
BstMBI GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
BstMWI GCNNNNNNNGC 2 cut(s) 110, 1042
BstNSI RCATGY 2 cut(s) 104, 1257
BstSFI CTRYAG 3 cut(s) 72, 282, 501
BstV1I GCAGC 3 cut(s) 86, 1023, 1289
BstV2I GAAGAC 1 cut(s) 817
BstX2I RGATCY 2 cut(s) 347, 1121
BstXI CCANNNNNNTGG 1 cut(s) 1115
BstYI RGATCY 2 cut(s) 347, 1121
Bsu36I CCTNAGG 1 cut(s) 1218
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 4 cut(s) 615, 864, 1102, 1131
BtgI CCRYGG 3 cut(s) 765, 865, 1203
BtrI CACGTC 1 cut(s) 269
BtsCI GGATG 6 cut(s) 477, 520, 837, 965, 1201, 1242
BtsIMutI CAGTG 3 cut(s) 318, 819, 1182
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 2 cut(s) 102, 279
Cfr13I GGNCC 4 cut(s) 566, 862, 1101, 1129
CseI GACGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 378, 954
CviAII CATG 8 cut(s) 101, 766, 889, 937, 1204, 1228, 1254, 1291
CviQI GTAC 2 cut(s) 378, 954
DdeI CTNAG 7 cut(s) 54, 310, 351, 776, 973, 1125, 1218
DpnI GATC 6 cut(s) 349, 495, 599, 944, 1123, 1241
DpnII GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
DraI TTTAAA 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco130I CCWWGG 2 cut(s) 765, 1203
Eco32I GATATC 2 cut(s) 736, 873
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 2 cut(s) 191, 680
Eco81I CCTNAGG 1 cut(s) 1218
Eco88I CYCGRG 2 cut(s) 478, 1189
EcoO109I RGGNCCY 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 1208
EcoRV GATATC 2 cut(s) 736, 873
EcoT14I CCWWGG 2 cut(s) 765, 1203
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 2 cut(s) 765, 1203
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 8 cut(s) 104, 769, 892, 940, 1207, 1231, 1257, 1294
FaqI GGGAC 1 cut(s) 579
FatI CATG 8 cut(s) 100, 765, 888, 936, 1203, 1227, 1253, 1290
FauI CCCGC 1 cut(s) 970
Fnu4HI GCNGC 4 cut(s) 75, 1021, 1037, 1278
FokI GGATG 6 cut(s) 484, 527, 824, 952, 1208, 1249
Fsp4HI GCNGC 4 cut(s) 75, 1021, 1037, 1278
FspBI CTAG 1 cut(s) 381
GluI GCNGC 4 cut(s) 75, 1021, 1037, 1278
GsaI CCCAGC 2 cut(s) 746, 1236
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 4 cut(s) 615, 864, 1102, 1131
HgaI GACGC 1 cut(s) 106
Hin1II CATG 8 cut(s) 104, 769, 892, 940, 1207, 1231, 1257, 1294
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 7 cut(s) 25, 83, 423, 455, 506, 608, 845
HphI GGTGA 5 cut(s) 173, 464, 547, 784, 1000
Hpy166II GTNNAC 2 cut(s) 555, 811
Hpy188I TCNGA 7 cut(s) 67, 96, 210, 232, 409, 511, 1244
Hpy188III TCNNGA 2 cut(s) 605, 1073
Hpy8I GTNNAC 2 cut(s) 555, 811
HpyAV CCTTC 4 cut(s) 194, 273, 979, 1092
HpyCH4III ACNGT 4 cut(s) 452, 646, 823, 1177
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 8 cut(s) 74, 104, 113, 257, 300, 1045, 1148, 1253
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 1042
HpyF3I CTNAG 7 cut(s) 54, 310, 351, 776, 973, 1125, 1218
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 8 cut(s) 104, 769, 892, 940, 1207, 1231, 1257, 1294
Kzo9I GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
LmnI GCTCC 1 cut(s) 1075
Lsp1109I GCAGC 3 cut(s) 86, 1023, 1289
LweI GCATC 5 cut(s) 462, 846, 922, 974, 1186
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 3 cut(s) 452, 790, 1088
MalI GATC 6 cut(s) 349, 495, 599, 944, 1123, 1241
MboI GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
MboII GAAGA 4 cut(s) 150, 817, 914, 995
MflI RGATCY 2 cut(s) 347, 1121
MluCI AATT 5 cut(s) 217, 712, 1076, 1208, 1296
MlyI GAGTC 4 cut(s) 34, 92, 449, 515
Mph1103I ATGCAT 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 5 cut(s) 245, 335, 369, 1004, 1284
MspA1I CMGCKG 1 cut(s) 977
Mva1269I GAATGC 2 cut(s) 104, 421
MwoI GCNNNNNNNGC 2 cut(s) 110, 1042
NcoI CCATGG 2 cut(s) 765, 1203
NdeII GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
NlaIII CATG 8 cut(s) 104, 769, 892, 940, 1207, 1231, 1257, 1294
NlaIV GGNNCC 2 cut(s) 149, 567
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 452, 790
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 2 cut(s) 104, 1257
PaeI GCATGC 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 478
PctI GAATGC 2 cut(s) 104, 421
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 3 cut(s) 423, 608, 845
PkrI GCNGC 4 cut(s) 76, 1022, 1038, 1279
PleI GAGTC 4 cut(s) 33, 91, 449, 514
PpsI GAGTC 4 cut(s) 33, 91, 449, 514
PpuMI RGGWCCY 1 cut(s) 566
Psp5II RGGWCCY 1 cut(s) 566
PspFI CCCAGC 2 cut(s) 742, 1232
PspN4I GGNNCC 2 cut(s) 149, 567
PspPI GGNCC 4 cut(s) 566, 862, 1101, 1129
PspPPI RGGWCCY 1 cut(s) 566
PspXI VCTCGAGB 1 cut(s) 478
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 347, 1121
RsaI GTAC 2 cut(s) 379, 955
RsaNI GTAC 2 cut(s) 378, 954
SaqAI TTAA 5 cut(s) 245, 335, 369, 1004, 1284
SatI GCNGC 4 cut(s) 75, 1021, 1037, 1278
Sau3AI GATC 6 cut(s) 347, 493, 597, 942, 1121, 1239
Sau96I GGNCC 4 cut(s) 566, 862, 1101, 1129
SchI GAGTC 4 cut(s) 34, 92, 449, 515
SfaNI GCATC 5 cut(s) 462, 846, 922, 974, 1186
SfcI CTRYAG 3 cut(s) 72, 282, 501
Sfr274I CTCGAG 1 cut(s) 478
SinI GGWCC 1 cut(s) 566
SlaI CTCGAG 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 397, 478
SmoI CTYRAG 2 cut(s) 397, 478
SpeI ACTAGT 1 cut(s) 380
SphI GCATGC 1 cut(s) 104
Sse9I AATT 5 cut(s) 217, 712, 1076, 1208, 1296
SsiI CCGC 2 cut(s) 977, 1020
SspI AATATT 1 cut(s) 1137
SspMI CTAG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 765, 1203
TaaI ACNGT 4 cut(s) 452, 646, 823, 1177
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 130, 479
TasI AATT 5 cut(s) 217, 712, 1076, 1208, 1296
TauI GCSGC 1 cut(s) 1023
TfiI GAWTC 3 cut(s) 423, 608, 845
Tru1I TTAA 5 cut(s) 245, 335, 369, 1004, 1284
Tru9I TTAA 5 cut(s) 245, 335, 369, 1004, 1284
TscAI CASTG 3 cut(s) 318, 826, 1182
TseFI GTSAC 2 cut(s) 452, 790
TseI GCWGC 3 cut(s) 74, 1036, 1277
Tsp45I GTSAC 2 cut(s) 452, 790
TspDTI ATGAA 2 cut(s) 34, 915
TspRI CASTG 3 cut(s) 318, 826, 1182
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 1 cut(s) 1208
XceI RCATGY 2 cut(s) 104, 1257
XhoI CTCGAG 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.