pycom03g00720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013150
Physical Location & Seq
Forward (+)
586353 .. 588407
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00720.3

Sequence Viewer

Length: 1239 bp
ATGGAGTCGATTCCTCTGAGGCATTCAATCTCCGCAACCAATCAGAGCCTTCTATTAAGAAGACAAAGAAACCCAGAAAATCAATTTCAGAGCAGCAGCCAAAGGTTTCACCTTCACACCCCAACTCGGCGTTTTCGAATCCATTCCAAACTCTCTGGTTTTCAAGATTCCAAGGGCTATGCAAGGCCTTCGCGTCTCTTGCCAGCTACAGAAGTGAAAATCTGCACAAATGACTCAGTGGAAAAGCTTTTCTCGTCTTTAAGGGATGACGGATCTCAGTCTTTATACAAGGTTAAGTTAGGTACTAGTAATGTTTATGGCTCAAGTCTCTCTGACTTGAATGCTGGGATCCTCCTTTGCGTGATAGACGAAAATGGTGACTCCATATTACAGAGGATACCATCGAGTATCATAACAAATCATGCTACAGAGTCGGAGGATGGCGTGCTTCACTTTCAAAGAGGTTCTGTTGATGAGTTCACCTTTGAGGGACCTAAGCTTGGAAAAGTTGGAGCTGTTTGGATCAGTCTTGAATCAGGTCAATGGCGGTTAGGAAGTGTGAGCTTGACCGTTATCTGTGGGAAACAAAGTTCGATGGAAGAAAAAGACGAAGAAAAACTTCAGTATACTGGTTTCAGTTACAACTTTGCTGTTGAGGATATCTTGCTGGGTGAGGGAAGTGACAGTTCCATGCTGCAACTTAGACCTTGCCTTGTGACCGAGCTATCCGGGGTTGACCCCGTCACCATCTTCACCAAAAGCCTCCCTGAATCAACTCTATCTGTGAGTGGGATATCAAACAAGGAAACCATGAGAGAATACGAGGATTTGAAACTATCTTTGCTACTTTATGATGCCATGCTGATCTTTGTTGGTACATCAGTTGCATCCTTCTCAGCTGGGGAAAACATAAGCTTTGCATTTTTAACAGGTGGGATGGGCGGCTTCTTCTATCTCTTGCTACTGCAAAGGTCGGTTGATGGATTGCCTGCTGCAGAATTGACTTCCATGAACACGGGACAGACCAACCAAACCTTCGGAGGATCTAAGGTTCCAATATTTGTCTTTGCATTGGCTATTGGTTTTACTCTAGTCACAGTGAAGTATGGCGGGGATGTCCCAATCGTATTCACTCCGAAACAACTCATAGCCGGGATGATTGGATTTCTTGCATGTAAAGTTTCTGTGGTCCTGGCAGCAGTTAAGCCCTTGCCAATAAGTCTAAAGATAAACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

44.91

Weight (kDa)

5.95

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55280 AT1G55280
fragaria_vesca FvH4_3g45230
malus_domestica MD03G1007100.v1.1
prunus_persica Prupe.6G006700_v2.0.a1
pyrus_communis pycom03g00720
rosa_chinensis RchiOBHm_Chr5g0082841
rosa_laevigata RLG00000036994
rosa_multiflora Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii Rroxscaffold_1G00001590
rosa_rugosa Rorug05G0480300
rosa_samantha Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana Rw5G049800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 626
AccII CGCG 1 cut(s) 193
AciI CCGC 4 cut(s) 33, 547, 942, 1110
AclWI GGATC 5 cut(s) 280, 343, 356, 530, 1051
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 2 cut(s) 304, 877
AfiI CCNNNNNNNGG 2 cut(s) 126, 500
AgsI TTSAA 6 cut(s) 27, 164, 340, 458, 533, 832
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 1019, 1051
AloI GAACNNNNNNTCC 4 cut(s) 574, 606, 1035, 1067
AluBI AGCT 8 cut(s) 206, 247, 499, 515, 564, 724, 899, 915
AluI AGCT 8 cut(s) 206, 247, 499, 515, 564, 724, 899, 915
Alw26I GTCTC 2 cut(s) 200, 332
AlwI GGATC 5 cut(s) 280, 343, 356, 530, 1051
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 5 cut(s) 93, 96, 694, 992, 1196
Asp700I GAANNNNTTC 2 cut(s) 142, 618
AspS9I GGNCC 2 cut(s) 491, 1189
AsuC2I CCSGG 2 cut(s) 730, 1153
AsuHPI GGTGA 6 cut(s) 101, 389, 472, 683, 736, 745
AsuII TTCGAA 1 cut(s) 136
AvaII GGWCC 2 cut(s) 491, 1189
BaeI ACNNNNGTAYC 2 cut(s) 867, 900
BamHI GGATCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 5 cut(s) 105, 108, 681, 979, 1208
BccI CCATC 6 cut(s) 409, 434, 589, 755, 931, 974
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 1 cut(s) 1193
BciVI GTATCC 1 cut(s) 390
BcnI CCSGG 2 cut(s) 730, 1153
BcoDI GTCTC 2 cut(s) 200, 332
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 2 cut(s) 306, 1091
BfmI CTRYAG 3 cut(s) 207, 426, 993
BfuI GTATCC 1 cut(s) 390
BisI GCNGC 6 cut(s) 94, 97, 695, 943, 993, 1197
BlsI GCNGC 6 cut(s) 95, 98, 696, 944, 994, 1198
Bme1390I CCNGG 3 cut(s) 730, 1153, 1193
Bme18I GGWCC 2 cut(s) 491, 1189
BmgT120I GGNCC 2 cut(s) 491, 1189
BmiI GGNNCC 3 cut(s) 350, 492, 1053
BmrFI CCNGG 3 cut(s) 730, 1153, 1193
BmsI GCATC 2 cut(s) 844, 896
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 307
BpuMI CCSGG 2 cut(s) 730, 1153
BsaJI CCNNGG 2 cut(s) 171, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 500
Bse1I ACTGG 1 cut(s) 634
BseBI CCWGG 1 cut(s) 1193
BseDI CCNNGG 2 cut(s) 171, 729
BseGI GGATG 6 cut(s) 271, 445, 887, 942, 1120, 1161
BseLI CCNNNNNNNGG 2 cut(s) 126, 500
BseMII CTCAG 4 cut(s) 8, 249, 290, 909
BseNI ACTGG 1 cut(s) 634
BseXI GCAGC 5 cut(s) 105, 108, 681, 979, 1208
BseYI CCCAGC 3 cut(s) 344, 667, 899
BsgI GTGCAG 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 729, 1152
BslFI GGGAC 3 cut(s) 504, 1032, 1103
BslI CCNNNNNNNGG 2 cut(s) 126, 500
BsmAI GTCTC 2 cut(s) 200, 332
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 3 cut(s) 504, 1032, 1103
BsmI GAATGC 2 cut(s) 22, 346
BsnI GGCC 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 5 cut(s) 272, 348, 522, 864, 1043
BspACI CCGC 4 cut(s) 33, 547, 942, 1110
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 4 cut(s) 9, 248, 289, 908
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 350, 492, 1053
BspMAI CTGCAG 1 cut(s) 997
BspPI GGATC 5 cut(s) 280, 343, 356, 530, 1051
BspT104I TTCGAA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 171, 729
BssMI GATC 5 cut(s) 272, 348, 522, 864, 1043
BssNAI GTATAC 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 1193
Bst4CI ACNGT 3 cut(s) 571, 686, 1099
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 204, 446, 990
BstDEI CTNAG 7 cut(s) 17, 235, 276, 495, 701, 895, 1047
BstF5I GGATG 6 cut(s) 271, 445, 887, 942, 1120, 1161
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 5 cut(s) 275, 351, 525, 867, 1046
BstMAI GTCTC 2 cut(s) 200, 332
BstMBI GATC 5 cut(s) 272, 348, 522, 864, 1043
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 1193
BstNSI RCATGY 1 cut(s) 1176
BstSCI CCNGG 3 cut(s) 728, 1151, 1191
BstSFI CTRYAG 3 cut(s) 207, 426, 993
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 5 cut(s) 105, 108, 681, 979, 1208
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 3 cut(s) 272, 348, 1043
BstYI RGATCY 3 cut(s) 272, 348, 1043
BstZ17I GTATAC 1 cut(s) 627
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 6 cut(s) 271, 445, 887, 942, 1120, 1161
BtsIMutI CAGTG 2 cut(s) 243, 1104
Cac8I GCNNGC 3 cut(s) 204, 446, 990
Cfr13I GGNCC 2 cut(s) 491, 1189
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 303, 876
CviAII CATG 6 cut(s) 422, 691, 811, 859, 1009, 1173
CviQI GTAC 2 cut(s) 303, 876
DdeI CTNAG 7 cut(s) 17, 235, 276, 495, 701, 895, 1047
DpnI GATC 5 cut(s) 274, 350, 524, 866, 1045
DpnII GATC 5 cut(s) 272, 348, 522, 864, 1043
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 187
Eco32I GATATC 2 cut(s) 661, 795
Eco47I GGWCC 2 cut(s) 491, 1189
Eco57I CTGAAG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 1191
EcoRV GATATC 2 cut(s) 661, 795
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 6 cut(s) 425, 694, 814, 862, 1012, 1176
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 3 cut(s) 504, 1032, 1103
FatI CATG 6 cut(s) 421, 690, 810, 858, 1008, 1172
FauI CCCGC 1 cut(s) 1103
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 6 cut(s) 94, 97, 695, 943, 993, 1197
FokI GGATG 6 cut(s) 278, 452, 874, 949, 1127, 1168
Fsp4HI GCNGC 6 cut(s) 94, 97, 695, 943, 993, 1197
FspBI CTAG 2 cut(s) 306, 1091
GluI GCNGC 6 cut(s) 94, 97, 695, 943, 993, 1197
GsaI CCCAGC 3 cut(s) 348, 671, 903
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 729, 1152
HgaI GACGC 1 cut(s) 182
Hin1II CATG 6 cut(s) 425, 694, 814, 862, 1012, 1176
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 3 cut(s) 245, 497, 913
HinfI GANTC 9 cut(s) 5, 10, 138, 167, 233, 380, 431, 533, 770
HpaII CCGG 2 cut(s) 729, 1152
HphI GGTGA 6 cut(s) 101, 389, 472, 683, 736, 745
Hpy166II GTNNAC 3 cut(s) 480, 627, 736
Hpy188I TCNGA 7 cut(s) 18, 45, 90, 334, 436, 1040, 1137
Hpy188III TCNNGA 2 cut(s) 164, 530
Hpy8I GTNNAC 3 cut(s) 480, 627, 736
HpyAV CCTTC 5 cut(s) 59, 122, 198, 901, 1045
HpyCH4III ACNGT 3 cut(s) 571, 686, 1099
HpyCH4V TGCA 9 cut(s) 182, 225, 697, 887, 920, 967, 995, 1070, 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 7 cut(s) 17, 235, 276, 495, 701, 895, 1047
Hsp92II CATG 6 cut(s) 425, 694, 814, 862, 1012, 1176
Kzo9I GATC 5 cut(s) 272, 348, 522, 864, 1043
LmnI GCTCC 1 cut(s) 512
Lsp1109I GCAGC 5 cut(s) 105, 108, 681, 979, 1208
LweI GCATC 2 cut(s) 844, 896
MaeI CTAG 2 cut(s) 306, 1091
MaeIII GTNAC 6 cut(s) 377, 638, 680, 715, 742, 1093
MalI GATC 5 cut(s) 274, 350, 524, 866, 1045
MboI GATC 5 cut(s) 272, 348, 522, 864, 1043
MboII GAAGA 5 cut(s) 72, 611, 623, 742, 940
MflI RGATCY 3 cut(s) 272, 348, 1043
MluCI AATT 2 cut(s) 83, 998
MlyI GAGTC 4 cut(s) 14, 227, 374, 440
MmeI TCCRAC 2 cut(s) 414, 490
MroXI GAANNNNTTC 2 cut(s) 142, 618
MseI TTAA 5 cut(s) 56, 260, 294, 926, 1203
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 2 cut(s) 729, 1152
MspR9I CCNGG 3 cut(s) 730, 1153, 1193
Mva1269I GAATGC 2 cut(s) 22, 346
MvaI CCWGG 1 cut(s) 1193
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 730, 1153
NdeII GATC 5 cut(s) 272, 348, 522, 864, 1043
NlaIII CATG 6 cut(s) 425, 694, 814, 862, 1012, 1176
NlaIV GGNNCC 3 cut(s) 350, 492, 1053
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 5 cut(s) 377, 680, 715, 742, 1093
NspI RCATGY 1 cut(s) 1176
NspV TTCGAA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 2 cut(s) 22, 346
PdmI GAANNNNTTC 2 cut(s) 142, 618
PfeI GAWTC 5 cut(s) 10, 138, 167, 533, 770
PflFI GACNNNGTC 1 cut(s) 740
PkrI GCNGC 6 cut(s) 95, 98, 696, 944, 994, 1198
PleI GAGTC 4 cut(s) 13, 227, 374, 439
PpsI GAGTC 4 cut(s) 13, 227, 374, 439
PpuMI RGGWCCY 1 cut(s) 491
Psp5II RGGWCCY 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 1191
PspFI CCCAGC 3 cut(s) 344, 667, 899
PspGI CCWGG 1 cut(s) 1191
PspN4I GGNNCC 3 cut(s) 350, 492, 1053
PspPI GGNCC 2 cut(s) 491, 1189
PspPPI RGGWCCY 1 cut(s) 491
PstI CTGCAG 1 cut(s) 997
PsuI RGATCY 3 cut(s) 272, 348, 1043
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 2 cut(s) 304, 877
RsaNI GTAC 2 cut(s) 303, 876
SaqAI TTAA 5 cut(s) 56, 260, 294, 926, 1203
SatI GCNGC 6 cut(s) 94, 97, 695, 943, 993, 1197
Sau3AI GATC 5 cut(s) 272, 348, 522, 864, 1043
Sau96I GGNCC 2 cut(s) 491, 1189
SchI GAGTC 4 cut(s) 14, 227, 374, 440
ScrFI CCNGG 3 cut(s) 730, 1153, 1193
SfaNI GCATC 2 cut(s) 844, 896
SfcI CTRYAG 3 cut(s) 207, 426, 993
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 2 cut(s) 491, 1189
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 2 cut(s) 83, 998
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 4 cut(s) 33, 547, 942, 1110
SspI AATATT 1 cut(s) 1059
SspMI CTAG 2 cut(s) 306, 1091
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 728, 1151, 1191
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 571, 686, 1099
TaqI TCGA 4 cut(s) 8, 136, 404, 593
TaqII GACCGA 1 cut(s) 734
TasI AATT 2 cut(s) 83, 998
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 5 cut(s) 10, 138, 167, 533, 770
Tru1I TTAA 5 cut(s) 56, 260, 294, 926, 1203
Tru9I TTAA 5 cut(s) 56, 260, 294, 926, 1203
TscAI CASTG 2 cut(s) 243, 1104
TseFI GTSAC 5 cut(s) 377, 680, 715, 742, 1093
TseI GCWGC 5 cut(s) 93, 96, 694, 992, 1196
Tsp45I GTSAC 5 cut(s) 377, 680, 715, 742, 1093
TspDTI ATGAA 1 cut(s) 1025
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 2 cut(s) 243, 1104
Tth111I GACNNNGTC 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 491, 1189
XceI RCATGY 1 cut(s) 1176
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 2 cut(s) 142, 618
XspI CTAG 2 cut(s) 306, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.