FvH4_3g45230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013150
Physical Location & Seq
Reverse (-)
37581039 .. 37584838
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45230.t1

Sequence Viewer

Length: 1368 bp
ATGTACTGTCTCGTGAAGCTAAAGATGACACTTTGTGACTTGTATATCAGCTTTGATTACCCTTTTGATGATGAGAATCTGCGACGTACAACTCTCTTTCATTGTTGCGTGTCTCACTCAGCTTTCTCTGAAACTGCAACTATGGATTCCATTTCTTTAAGGCATGCAATCTCTGCAACACATCACACCGATCTCAGGAGAACACGACTAAACCCAGAAAAGCCTTTCCAGACTAAAAGGTTTCACCTTCACAAACCAACTGCCCGTTTCCAAATCCATTCCAAACTCTCTGACTTCCAAGACTATGCAAAGCCTTCACGCCTATTGCAAGCCGCAGAGGTGAATGTTTGCACAGATACCTCGGTGGAAAGAAGCTTCTTATCATTAAGAGATTATGAATCTGAGGCTTTATATAAGGTCAAGCTAGGTACTAGTAATGCTTATGGTTCAAGTCTCTCTGACATTACTGCTGGAATCCTCCTGTGCGTGATAGACAAAAATGGTAACTCCATACTACAGAGGATACCCTCAAATTTGAGACCAGATGATTCTACAGAGGTAGAGGATGAGATAATTCAGTTTCAAAGAGGTTCTGTTGATGAGTTCACCTTTAAGGGACCTAAACTTGAAAAAATTGAAGCTCTTTGGATCAGTCTTGAATCAGGCCAATGGAGGTTAGGCAGTGTGAAGTTGACTGTTATATATGGGAATATTTCTTTCGAGGAATCAGATGGAGAGAGACCTCAGTATATTGGTTTCGATTACAATTTCCAAGTTGAGGACATCTTGCTTGGAGAGGGAAGTGACAGGTCCATGGTGGAACTTAGACCTTGCCTTGCCACTAAGTTGTCTGGGGTTGACCCCTTCACCATGTTGACTCAAAGCCTCCCTGAATCAATTCTATCCGTGAGCTGTGGTATATCAAATGAGGAAACCATGAGAGAATACGCGGACTTGAAGTTCTCTTTGCTACTTTACGATGCCATTCTGGTCTTATTTGGTACATCAGTTGCATCCTTTTTGCTTGGGGAAAATGCTGGTTCTGCGTTTTTGACAGGTGGGATTGGGGGCTTCTTGTATCTTCTTCTACTGCAAAGATCAGTTGATGGATTACCTGCTCCGGAATCAATTTCTATGGACAGAAAAAGCACAAATCAAATGTTTGGAGGAACAAAGGGGCCAATATTTGGCCTGGCATTGGCTTTTGGTTTTGCTTTGTTTATAGTGAATTATAGCTCTGGGGATGTCCCAATGGTTTTCACACCAAAAGAAGTCTTGGCTGGGATGGTGGGATTTCTTGCATGTAAAGTTGCTGTGGTTTTGGCGGCAATTAAACCCATGACAATAGACTTGAACATAAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

50.52

Weight (kDa)

5.28

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7755 PF24938 136 - 280 6.8e-62 Domain of unknown function (DUF7755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55280 AT1G55280
fragaria_vesca FvH4_3g45230
malus_domestica MD03G1007100.v1.1
prunus_persica Prupe.6G006700_v2.0.a1
pyrus_communis pycom03g00720
rosa_chinensis RchiOBHm_Chr5g0082841
rosa_laevigata RLG00000036994
rosa_multiflora Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii Rroxscaffold_1G00001590
rosa_rugosa Rorug05G0480300
rosa_samantha Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana Rw5G049800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1123
AccB7I CCANNNNNTGG 1 cut(s) 1187
AccII CGCG 1 cut(s) 950
AccIII TCCGGA 1 cut(s) 1120
AciI CCGC 3 cut(s) 333, 950, 1325
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 1 cut(s) 532
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 4 cut(s) 5, 88, 430, 1003
AfiI CCNNNNNNNGG 4 cut(s) 195, 778, 1187, 1198
AgsI TTSAA 7 cut(s) 450, 584, 629, 638, 659, 958, 1354
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 1191
AloI GAACNNNNNNTCC 2 cut(s) 944, 976
AluBI AGCT 8 cut(s) 19, 51, 122, 375, 424, 641, 912, 1236
AluI AGCT 8 cut(s) 19, 51, 122, 375, 424, 641, 912, 1236
Alw26I GTCTC 5 cut(s) 14, 117, 458, 532, 733
AlwI GGATC 1 cut(s) 656
Aor13HI TCCGGA 1 cut(s) 1120
AoxI GGCC 3 cut(s) 664, 1178, 1189
ApoI RAATTY 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 897
AspS9I GGNCC 3 cut(s) 617, 810, 1178
AsuHPI GGTGA 4 cut(s) 236, 352, 598, 859
AvaII GGWCC 2 cut(s) 617, 810
BaeI ACNNNNGTAYC 4 cut(s) 348, 381, 993, 1026
BauI CACGAG 1 cut(s) 11
BccI CCATC 3 cut(s) 725, 1100, 1279
BciT130I CCWGG 1 cut(s) 1193
BciVI GTATCC 1 cut(s) 516
BcoDI GTCTC 5 cut(s) 14, 117, 458, 532, 733
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 425, 432
BfmI CTRYAG 2 cut(s) 515, 552
BfuAI ACCTGC 1 cut(s) 1123
BfuI GTATCC 1 cut(s) 516
BisI GCNGC 2 cut(s) 333, 1326
BlsI GCNGC 2 cut(s) 334, 1327
Bme1390I CCNGG 1 cut(s) 1193
Bme18I GGWCC 2 cut(s) 617, 810
BmgT120I GGNCC 3 cut(s) 617, 810, 1178
BmiI GGNNCC 2 cut(s) 618, 1179
BmrFI CCNGG 1 cut(s) 1193
BmsI GCATC 2 cut(s) 970, 1022
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 532, 733
BsaJI CCNNGG 2 cut(s) 360, 813
BsaWI WCCGGW 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 778, 1187, 1198
Bse8I GATNNNNATC 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 1120
BseBI CCWGG 1 cut(s) 1193
BseDI CCNNGG 2 cut(s) 360, 813
BseGI GGATG 4 cut(s) 571, 1013, 1249, 1290
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 4 cut(s) 195, 778, 1187, 1198
BseMII CTCAG 4 cut(s) 132, 208, 393, 758
BseYI CCCAGC 1 cut(s) 1280
Bsh1236I CGCG 1 cut(s) 950
BshFI GGCC 3 cut(s) 666, 1180, 1191
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 2 cut(s) 630, 1232
BslI CCNNNNNNNGG 4 cut(s) 195, 778, 1187, 1198
BsmAI GTCTC 5 cut(s) 14, 117, 458, 532, 733
BsmFI GGGAC 2 cut(s) 630, 1232
BsnI GGCC 3 cut(s) 666, 1180, 1191
Bso31I GGTCTC 2 cut(s) 532, 733
Bsp13I TCCGGA 1 cut(s) 1120
Bsp143I GATC 3 cut(s) 190, 648, 1097
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 3 cut(s) 333, 950, 1325
BspANI GGCC 3 cut(s) 666, 1180, 1191
BspCNI CTCAG 4 cut(s) 131, 207, 394, 757
BspEI TCCGGA 1 cut(s) 1120
BspFNI CGCG 1 cut(s) 950
BspLI GGNNCC 2 cut(s) 618, 1179
BspMI ACCTGC 1 cut(s) 1123
BspPI GGATC 1 cut(s) 656
BspTNI GGTCTC 2 cut(s) 532, 733
BssECI CCNNGG 2 cut(s) 360, 813
BssMI GATC 3 cut(s) 190, 648, 1097
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 813
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 1193
Bst4CI ACNGT 2 cut(s) 8, 697
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 165, 330
BstDEI CTNAG 6 cut(s) 118, 194, 402, 744, 824, 843
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 4 cut(s) 571, 1013, 1249, 1290
BstFNI CGCG 1 cut(s) 950
BstKTI GATC 3 cut(s) 193, 651, 1100
BstMAI GTCTC 5 cut(s) 14, 117, 458, 532, 733
BstMBI GATC 3 cut(s) 190, 648, 1097
BstMWI GCNNNNNNNGC 2 cut(s) 173, 1043
BstNI CCWGG 1 cut(s) 1193
BstNSI RCATGY 2 cut(s) 167, 1305
BstSCI CCNGG 1 cut(s) 1191
BstSFI CTRYAG 2 cut(s) 515, 552
BstUI CGCG 1 cut(s) 950
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 3 cut(s) 666, 1180, 1191
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 4 cut(s) 571, 1013, 1249, 1290
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 688
BveI ACCTGC 1 cut(s) 1123
Cac8I GCNNGC 2 cut(s) 165, 330
Cfr13I GGNCC 3 cut(s) 617, 810, 1178
Csp6I GTAC 4 cut(s) 4, 87, 429, 1002
CviAII CATG 6 cut(s) 164, 814, 871, 937, 1302, 1339
CviQI GTAC 4 cut(s) 4, 87, 429, 1002
DdeI CTNAG 6 cut(s) 118, 194, 402, 744, 824, 843
DpnI GATC 3 cut(s) 192, 650, 1099
DpnII GATC 3 cut(s) 190, 648, 1097
DraIII CACNNNGTG 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 813
Eco31I GGTCTC 2 cut(s) 532, 733
Eco47I GGWCC 2 cut(s) 617, 810
EcoO109I RGGNCCY 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 1191
EcoT14I CCWWGG 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 6 cut(s) 167, 817, 874, 940, 1305, 1342
FaqI GGGAC 2 cut(s) 630, 1232
FatI CATG 6 cut(s) 163, 813, 870, 936, 1301, 1338
Fnu4HI GCNGC 2 cut(s) 333, 1326
FokI GGATG 4 cut(s) 578, 1000, 1256, 1297
Fsp4HI GCNGC 2 cut(s) 333, 1326
FspBI CTAG 2 cut(s) 425, 432
GluI GCNGC 2 cut(s) 333, 1326
GsaI CCCAGC 1 cut(s) 1284
HaeIII GGCC 3 cut(s) 666, 1180, 1191
HapII CCGG 1 cut(s) 1121
Hin1II CATG 6 cut(s) 167, 817, 874, 940, 1305, 1342
HincII GTYRAC 3 cut(s) 693, 859, 876
HindII GTYRAC 3 cut(s) 693, 859, 876
HindIII AAGCTT 1 cut(s) 373
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 4 cut(s) 236, 352, 598, 859
Hpy166II GTNNAC 4 cut(s) 606, 693, 859, 876
Hpy188I TCNGA 5 cut(s) 130, 292, 403, 460, 730
Hpy188III TCNNGA 5 cut(s) 13, 196, 229, 656, 1121
Hpy8I GTNNAC 4 cut(s) 606, 693, 859, 876
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 3 cut(s) 257, 324, 874
HpyCH4III ACNGT 2 cut(s) 8, 697
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 9 cut(s) 137, 167, 176, 308, 328, 351, 1013, 1093, 1301
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 1043
HpyF3I CTNAG 6 cut(s) 118, 194, 402, 744, 824, 843
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 6 cut(s) 167, 817, 874, 940, 1305, 1342
Kpn2I TCCGGA 1 cut(s) 1120
Kzo9I GATC 3 cut(s) 190, 648, 1097
LmnI GCTCC 1 cut(s) 1123
LweI GCATC 2 cut(s) 970, 1022
MaeI CTAG 2 cut(s) 425, 432
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 3 cut(s) 35, 503, 803
MalI GATC 3 cut(s) 192, 650, 1099
MboI GATC 3 cut(s) 190, 648, 1097
MboII GAAGA 2 cut(s) 1073, 1076
MluCI AATT 8 cut(s) 532, 573, 633, 766, 897, 1128, 1228, 1329
MlyI GAGTC 1 cut(s) 871
MroI TCCGGA 1 cut(s) 1120
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 4 cut(s) 158, 386, 612, 1332
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 1 cut(s) 1193
MvaI CCWGG 1 cut(s) 1193
MvnI CGCG 1 cut(s) 950
MwoI GCNNNNNNNGC 2 cut(s) 173, 1043
NcoI CCATGG 1 cut(s) 813
NdeII GATC 3 cut(s) 190, 648, 1097
NlaIII CATG 6 cut(s) 167, 817, 874, 940, 1305, 1342
NlaIV GGNNCC 2 cut(s) 618, 1179
NmuCI GTSAC 2 cut(s) 35, 803
NspI RCATGY 2 cut(s) 167, 1305
PaeI GCATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 9 cut(s) 76, 146, 398, 474, 548, 659, 725, 893, 1124
PflMI CCANNNNNTGG 1 cut(s) 1187
PkrI GCNGC 2 cut(s) 334, 1327
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
PpuMI RGGWCCY 1 cut(s) 617
Psp5II RGGWCCY 1 cut(s) 617
Psp6I CCWGG 1 cut(s) 1191
PspFI CCCAGC 1 cut(s) 1280
PspGI CCWGG 1 cut(s) 1191
PspN4I GGNNCC 2 cut(s) 618, 1179
PspPI GGNCC 3 cut(s) 617, 810, 1178
PspPPI RGGWCCY 1 cut(s) 617
RsaI GTAC 4 cut(s) 5, 88, 430, 1003
RsaNI GTAC 4 cut(s) 4, 87, 429, 1002
SaqAI TTAA 4 cut(s) 158, 386, 612, 1332
SatI GCNGC 2 cut(s) 333, 1326
Sau3AI GATC 3 cut(s) 190, 648, 1097
Sau96I GGNCC 3 cut(s) 617, 810, 1178
SchI GAGTC 1 cut(s) 871
ScrFI CCNGG 1 cut(s) 1193
SfaNI GCATC 2 cut(s) 970, 1022
SfcI CTRYAG 2 cut(s) 515, 552
SinI GGWCC 2 cut(s) 617, 810
SpeI ACTAGT 1 cut(s) 431
SphI GCATGC 1 cut(s) 167
Sse9I AATT 8 cut(s) 532, 573, 633, 766, 897, 1128, 1228, 1329
SsiI CCGC 3 cut(s) 333, 950, 1325
SspI AATATT 2 cut(s) 712, 1185
SspMI CTAG 2 cut(s) 425, 432
StyD4I CCNGG 1 cut(s) 1191
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 2 cut(s) 8, 697
TaiI ACGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 720, 759
TasI AATT 8 cut(s) 532, 573, 633, 766, 897, 1128, 1228, 1329
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 335, 1328
TfiI GAWTC 9 cut(s) 76, 146, 398, 474, 548, 659, 725, 893, 1124
Tru1I TTAA 4 cut(s) 158, 386, 612, 1332
Tru9I TTAA 4 cut(s) 158, 386, 612, 1332
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 2 cut(s) 35, 803
Tsp45I GTSAC 2 cut(s) 35, 803
TspDTI ATGAA 2 cut(s) 89, 411
TspGWI ACGGA 1 cut(s) 895
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 1187
VpaK11BI GGWCC 2 cut(s) 617, 810
XapI RAATTY 1 cut(s) 532
XceI RCATGY 2 cut(s) 167, 1305
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 2 cut(s) 425, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.