Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007172.1

Orthogroup ID

OG0013150

Physical Location & Seq

Genomic Coordinates Reverse (-)

3733 .. 5091

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007172.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgtactatgcaaagccttcatgcctattgcaagccacagaagtgaatgtctgcacagatacgtcagtggaaaaaagcttcttgtcattaagggattatgaatgtcaggctttatataaggtcaagctaggtactagtaatgcttatggttcaagtctctccgaccttactgctggaatcctcctgtgcgtgatagacgaaaatggtaactccatactacagaggataccctcgaatttgagaccggatgaatctaaagaagtagaggatgagataattcagtttcaaagaggttctgttgatgagttcacctttaagggacctaaacttggaaaagttgaagctctttggatcagtcttgaatcaggccaatggaggttaggaagtgtgaacttgactgttatatatgggaatcatatttctttggaggaaacagatggagaggaacctcagtatattggtttcgattacaacttccaagctgaggacatcttgctcggagagggaagtgacagctccatggtggaacttagaccttgccttgtcaccaagctatctggggttgaccccttcaccatgttgactaaaagcctccctgaatcaactctatccgagagccgtgggatatcaaatgaggaaaccatgagagaatacgcggatttgaagttctctttgctactttacgatgccatactggtcttggttggtacatcagttgcatccttttcagttggggaaaatgccggttctgcatttttaacaggtgggattggtggcttcttgtatcttcttctactgcagaggtcagttgatggattacctattccagaatcaatttccgtggacagcaaaagcaccaatcaaatgtttggaggaatgaagaggccaatctttggccttgcattggctcttggttttgctttatttacagtgaagtatagctctggggatgtcccaatggttttcacagcaaaagaagtcttggctgggatggtgggatttcttgcatgtaaagttgctgtggttttggcagcaattaagcccatgacaatagacctaaagataaaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

38.79

Weight (kDa)

4.62

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55280 AT1G55280
fragaria_vesca	FvH4_3g45230
malus_domestica	MD03G1007100.v1.1
prunus_persica	Prupe.6G006700_v2.0.a1
pyrus_communis	pycom03g00720
rosa_chinensis	RchiOBHm_Chr5g0082841
rosa_laevigata	RLG00000036994
rosa_multiflora	Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001590
rosa_rugosa	Rorug05G0480300
rosa_samantha	Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana	Rw5G049800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccII	CGCG	1 cut(s)	656
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	3 cut(s)	5, 133, 709
AfiI	CCNNNNNNNGG	4 cut(s)	329, 484, 893, 904
AgsI	TTSAA	5 cut(s)	153, 287, 341, 362, 664
AhlI	ACTAGT	1 cut(s)	134
AleI	CACNNNNGTG	1 cut(s)	41
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	7 cut(s)	78, 127, 344, 482, 516, 553, 942
AluI	AGCT	7 cut(s)	78, 127, 344, 482, 516, 553, 942
Alw26I	GTCTC	2 cut(s)	161, 235
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	3 cut(s)	367, 884, 895
ApeKI	GCWGC	1 cut(s)	1031
ApoI	RAATTY	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	3 cut(s)	301, 538, 565
AvaII	GGWCC	1 cut(s)	320
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 699, 732
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	1043
BccI	CCATC	3 cut(s)	431, 806, 985
BceAI	ACGGC	1 cut(s)	603
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciVI	GTATCC	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	161, 235
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	2 cut(s)	128, 135
BfmI	CTRYAG	2 cut(s)	218, 797
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	1032
BlsI	GCNGC	1 cut(s)	1033
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	321, 447
BmsI	GCATC	2 cut(s)	676, 728
Bpu10I	CCTNAGC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	519, 619, 840
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 484, 893, 904
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	519, 619, 840
BseGI	GGATG	5 cut(s)	253, 274, 719, 955, 996
BseLI	CCNNNNNNNGG	4 cut(s)	329, 484, 893, 904
BseMII	CTCAG	2 cut(s)	464, 474
BseNI	ACTGG	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	1043
BseYI	CCCAGC	1 cut(s)	986
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	369, 886, 897
BsiSI	CCGG	2 cut(s)	245, 744
BslFI	GGGAC	2 cut(s)	333, 938
BslI	CCNNNNNNNGG	4 cut(s)	329, 484, 893, 904
BsmAI	GTCTC	2 cut(s)	161, 235
BsmFI	GGGAC	2 cut(s)	333, 938
BsnI	GGCC	3 cut(s)	369, 886, 897
Bso31I	GGTCTC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	3 cut(s)	369, 886, 897
BspCNI	CTCAG	2 cut(s)	463, 475
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	2 cut(s)	321, 447
BspMAI	CTGCAG	1 cut(s)	801
BspPI	GGATC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	3 cut(s)	519, 619, 840
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	400, 931
Bst6I	CTCTTC	1 cut(s)	875
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	450, 483, 530
BstDSI	CCRYGG	3 cut(s)	519, 619, 840
BstF5I	GGATG	5 cut(s)	253, 274, 719, 955, 996
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	2 cut(s)	161, 235
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstNSI	RCATGY	1 cut(s)	1011
BstSFI	CTRYAG	2 cut(s)	218, 797
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	1043
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	369, 886, 897
BtgI	CCRYGG	3 cut(s)	519, 619, 840
BtsCI	GGATG	5 cut(s)	253, 274, 719, 955, 996
BtsIMutI	CAGTG	2 cut(s)	72, 936
Cac8I	GCNNGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	4, 132, 708
CspCI	CAANNNNNGTGG	2 cut(s)	822, 857
CviAII	CATG	6 cut(s)	21, 520, 577, 643, 1008, 1045
CviQI	GTAC	3 cut(s)	4, 132, 708
DdeI	CTNAG	3 cut(s)	450, 483, 530
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	875
Eco130I	CCWWGG	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	6 cut(s)	24, 523, 580, 646, 1011, 1048
FaqI	GGGAC	2 cut(s)	333, 938
FatI	CATG	6 cut(s)	20, 519, 576, 642, 1007, 1044
Fnu4HI	GCNGC	1 cut(s)	1032
FokI	GGATG	5 cut(s)	260, 281, 706, 962, 1003
Fsp4HI	GCNGC	1 cut(s)	1032
FspBI	CTAG	2 cut(s)	128, 135
GluI	GCNGC	1 cut(s)	1032
GsaI	CCCAGC	1 cut(s)	990
HaeIII	GGCC	3 cut(s)	369, 886, 897
HapII	CCGG	2 cut(s)	245, 744
Hin1II	CATG	6 cut(s)	24, 523, 580, 646, 1011, 1048
HincII	GTYRAC	2 cut(s)	565, 582
HindII	GTYRAC	2 cut(s)	565, 582
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	6 cut(s)	177, 251, 362, 412, 599, 830
HpaII	CCGG	2 cut(s)	245, 744
HphI	GGTGA	3 cut(s)	301, 538, 565
Hpy166II	GTNNAC	5 cut(s)	309, 391, 565, 582, 844
Hpy188I	TCNGA	3 cut(s)	163, 500, 613
Hpy188III	TCNNGA	2 cut(s)	359, 827
Hpy8I	GTNNAC	5 cut(s)	309, 391, 565, 582, 844
HpyAV	CCTTC	2 cut(s)	27, 580
HpyCH4III	ACNGT	2 cut(s)	400, 931
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	8 cut(s)	11, 31, 54, 719, 752, 799, 902, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	3 cut(s)	450, 483, 530
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	6 cut(s)	24, 523, 580, 646, 1011, 1048
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	1 cut(s)	1043
LweI	GCATC	2 cut(s)	676, 728
MaeI	CTAG	2 cut(s)	128, 135
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	3 cut(s)	206, 509, 544
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	3 cut(s)	779, 782, 892
MluCI	AATT	4 cut(s)	235, 276, 834, 1035
MmeI	TCCRAC	1 cut(s)	186
MseI	TTAA	4 cut(s)	89, 315, 758, 1038
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	2 cut(s)	245, 744
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	749
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	6 cut(s)	24, 523, 580, 646, 1011, 1048
NlaIV	GGNNCC	2 cut(s)	321, 447
NmuCI	GTSAC	2 cut(s)	509, 544
NspI	RCATGY	1 cut(s)	1011
OliI	CACNNNNGTG	1 cut(s)	41
PfeI	GAWTC	6 cut(s)	177, 251, 362, 412, 599, 830
PflMI	CCANNNNNTGG	1 cut(s)	893
PkrI	GCNGC	1 cut(s)	1033
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	986
PspN4I	GGNNCC	2 cut(s)	321, 447
PspPI	GGNCC	1 cut(s)	320
PspPPI	RGGWCCY	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	801
RsaI	GTAC	3 cut(s)	5, 133, 709
RsaNI	GTAC	3 cut(s)	4, 132, 708
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	89, 315, 758, 1038
SatI	GCNGC	1 cut(s)	1032
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	320
SfaNI	GCATC	2 cut(s)	676, 728
SfcI	CTRYAG	2 cut(s)	218, 797
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	4 cut(s)	235, 276, 834, 1035
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	2 cut(s)	128, 135
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	400, 931
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	233, 465
TasI	AATT	4 cut(s)	235, 276, 834, 1035
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	6 cut(s)	177, 251, 362, 412, 599, 830
Tru1I	TTAA	4 cut(s)	89, 315, 758, 1038
Tru9I	TTAA	4 cut(s)	89, 315, 758, 1038
TscAI	CASTG	2 cut(s)	72, 936
TseFI	GTSAC	2 cut(s)	509, 544
TseI	GCWGC	1 cut(s)	1031
Tsp45I	GTSAC	2 cut(s)	509, 544
TspDTI	ATGAA	4 cut(s)	9, 114, 264, 893
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	2 cut(s)	72, 936
Van91I	CCANNNNNTGG	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	1011
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XspI	CTAG	2 cut(s)	128, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.