Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

20713499 .. 20715611

Gene Structure 2113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCTTTAGCTCCGAGCAGTTATCCATCTCTGTATTCTTCGCCTTCACTGCCAAGAACCCAGCAAACCAAGCAAAACCCTAGTTTGATCACTCAATCCAGTTTCATTTCCGCCAAAAGTCTCTTCCTTTCGAGCAATTCGGCTTCTTTATGCAATACCCATGTTGCCAAACGCCGGAATTTAGCTTTGAAGGCGTCGGAGACAGAGTCTTCAGCTAAAGCTGAAGCAGGAGGAGACGGAGAAGAAGAAGAGAAGTATGAAACATATGAAATTGAAGTGGAGCAGCCTTATGGTTTGAAATTCAGGAAAGGAAGAGATGGTGGCACTTACATTGATGCTATCTTACCAGGTGGATCAGCTGACAAAACCGGAAAGTTCACTGTTGGCGATAGAGTTATTGCCACAAGTGCAGTATTTGGAACAGAGATTTGGCCTGCAGCTGAGTACGGTAGGACAATGTACACAATTCGTCAGAGAATTGGTCCCTTGCTTATGCAAATGGAGAAGAGAAATGGTAAGGCTGAAGATACTGGTGAGTTAACAGAGAAGGAGATCATAAGAGCTGAGAGAAATGCCGGATACATTAGCAGTAGATTGAGAGAGATTCAGATGCAAAACTATTTGAAGAAGAAAGAACAGAAAGCTCAACGGGAGAAGGATCTTCGTGAAGGGCTGCAATTTTCCAAGAATGGTAAGTATGAGGAAGCATTGGAGAGGTTTGAGTCGGTGTTAGGTTCTAAACCAACACCAGAAGAAGCATCAGTTGCAAGTTACAATGTTGCTTGTTGCTACTCAAAGCTTAATCAGGTTCAAGCTGGTCTCTCGGCTCTGGAAGAAGCATTGAAGTCAGGATATGAAGATTTTAAGAGAATCAGAAGTGATCCAGATCTGGAAACTCTCAGGAAGTCGAAGGATTTCGATCCACTTCTGAAGCAATTCGACGAATCTTTCATCAATGAGAGTGCCATTAACGCCATCAAATCCTTGTTTGGCTTTAACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

37.41

Weight (kDa)

8.19

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	4 cut(s)	361, 666, 875, 914
AcsI	RAATTY	2 cut(s)	178, 299
AcuI	CTGAAG	4 cut(s)	195, 243, 543, 950
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	446, 461
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	6 cut(s)	190, 275, 298, 625, 812, 844
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 412, 444
Alw26I	GTCTC	4 cut(s)	125, 194, 228, 824
AlwI	GGATC	4 cut(s)	361, 666, 875, 914
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	3 cut(s)	283, 437, 673
ApoI	RAATTY	2 cut(s)	178, 299
Asp700I	GAANNNNTTC	2 cut(s)	914, 935
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	295, 449, 660
BccI	CCATC	3 cut(s)	34, 311, 983
BciT130I	CCWGG	1 cut(s)	348
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	4 cut(s)	125, 194, 228, 824
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	3 cut(s)	284, 438, 674
BlsI	GCNGC	3 cut(s)	285, 439, 675
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	325, 600, 767
BpiI	GAAGAC	1 cut(s)	201
BsaBI	GATNNNNATC	2 cut(s)	885, 918
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	824
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	99, 535
Bse8I	GATNNNNATC	2 cut(s)	885, 918
BseBI	CCWGG	1 cut(s)	348
BseJI	GATNNNNATC	2 cut(s)	885, 918
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	432, 555, 913
BseNI	ACTGG	2 cut(s)	99, 535
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	295, 449, 660
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	175, 369, 576
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	4 cut(s)	125, 194, 228, 824
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	433
Bso31I	GGTCTC	1 cut(s)	824
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	3 cut(s)	433, 556, 912
BspLI	GGNNCC	1 cut(s)	484
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	4 cut(s)	361, 666, 875, 914
BspTNI	GGTCTC	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	99, 535
BssMI	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	382, 449
Bst6I	CTCTTC	4 cut(s)	128, 243, 307, 500
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	441, 564, 899
BstKTI	GATC	7 cut(s)	90, 356, 555, 661, 883, 889, 922
BstMAI	GTCTC	4 cut(s)	125, 194, 228, 824
BstMBI	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 70, 191, 407, 764, 971
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	295, 449, 660
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	658, 886
BstYI	RGATCY	2 cut(s)	658, 886
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 378
Cac8I	GCNNGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	445, 460
CviAII	CATG	1 cut(s)	161
CviQI	GTAC	2 cut(s)	445, 460
DdeI	CTNAG	3 cut(s)	441, 564, 899
DpnI	GATC	7 cut(s)	89, 355, 554, 660, 882, 888, 921
DpnII	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
Eam1104I	CTCTTC	4 cut(s)	128, 243, 307, 500
EarI	CTCTTC	4 cut(s)	128, 243, 307, 500
EciI	GGCGGA	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	4 cut(s)	195, 243, 543, 950
EcoRII	CCWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	284, 438, 674
Fsp4HI	GCNGC	3 cut(s)	284, 438, 674
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	3 cut(s)	284, 438, 674
GsaI	CCCAGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	3 cut(s)	175, 369, 576
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	5 cut(s)	206, 604, 722, 870, 944
HpaI	GTTAAC	1 cut(s)	540
HpaII	CCGG	3 cut(s)	175, 369, 576
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	378, 462, 540
Hpy188I	TCNGA	6 cut(s)	15, 199, 474, 609, 875, 930
Hpy188III	TCNNGA	7 cut(s)	304, 665, 830, 849, 884, 890, 901
Hpy8I	GTNNAC	3 cut(s)	378, 462, 540
Hpy99I	CGWCG	2 cut(s)	199, 944
HpyAV	CCTTC	6 cut(s)	54, 184, 541, 649, 662, 904
HpyCH4III	ACNGT	2 cut(s)	382, 449
HpyCH4V	TGCA	7 cut(s)	153, 410, 437, 496, 613, 676, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 70, 191, 407, 764, 971
HpyF3I	CTNAG	3 cut(s)	441, 564, 899
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	540
Kzo9I	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
LmnI	GCTCC	2 cut(s)	16, 280
Lsp1109I	GCAGC	3 cut(s)	295, 449, 660
LweI	GCATC	3 cut(s)	325, 600, 767
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	7 cut(s)	89, 355, 554, 660, 882, 888, 921
MboI	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
MflI	RGATCY	2 cut(s)	658, 886
MluCI	AATT	8 cut(s)	136, 178, 270, 299, 465, 477, 677, 935
MlyI	GAGTC	2 cut(s)	215, 731
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	224, 694, 708
MroXI	GAANNNNTTC	2 cut(s)	914, 935
MseI	TTAA	5 cut(s)	539, 801, 864, 969, 996
MspA1I	CMGCKG	2 cut(s)	359, 440
MspI	CCGG	3 cut(s)	175, 369, 576
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	6 cut(s)	49, 70, 191, 407, 764, 971
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	484
NmeAIII	GCCGAG	1 cut(s)	803
PdmI	GAANNNNTTC	2 cut(s)	914, 935
PfeI	GAWTC	3 cut(s)	604, 870, 944
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	285, 439, 675
PleI	GAGTC	2 cut(s)	214, 730
PpsI	GAGTC	2 cut(s)	214, 730
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	658, 886
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	359, 440
RsaI	GTAC	2 cut(s)	446, 461
RsaNI	GTAC	2 cut(s)	445, 460
SaqAI	TTAA	5 cut(s)	539, 801, 864, 969, 996
SatI	GCNGC	3 cut(s)	284, 438, 674
Sau3AI	GATC	7 cut(s)	87, 353, 552, 658, 880, 886, 919
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	215, 731
ScrFI	CCNGG	1 cut(s)	348
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	3 cut(s)	325, 600, 767
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	482
Sse9I	AATT	8 cut(s)	136, 178, 270, 299, 465, 477, 677, 935
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	382, 449
TaqI	TCGA	4 cut(s)	131, 908, 918, 939
TasI	AATT	8 cut(s)	136, 178, 270, 299, 465, 477, 677, 935
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	604, 870, 944
Tru1I	TTAA	5 cut(s)	539, 801, 864, 969, 996
Tru9I	TTAA	5 cut(s)	539, 801, 864, 969, 996
TscAI	CASTG	2 cut(s)	54, 385
TseI	GCWGC	3 cut(s)	283, 437, 673
TspDTI	ATGAA	5 cut(s)	94, 273, 282, 870, 940
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	54, 385
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	2 cut(s)	178, 299
XmnI	GAANNNNTTC	2 cut(s)	914, 935
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.