Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Reverse (-)

87966991 .. 87968984

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCTTTAGCTCCAACCAGTCACCTATCTCTCTATTCTTCACCACCATTGCCAAGAGCTGCTCTAACCAAGCACAACCCTCTTGTGTTTTCTCAAACCAACAAGAACTGGTCATGTCTCAGCACTTCTAGCTGTTTCCTCAATACCCAACTGGTCAAGCTATCCATTTTCATTGTAAGAGCATCAGAAACTGAGTCTCCAACTGCTGAAAGTGAAGGTGGGGGTGAAGGAGGAGGAGATGAACCATATGAGGAGTATGAGGTAGAGATTATACAGCCTTATGGGCTCAAATTTGCAAAGGGTCGAGATGGTGGAACTTACATTGATGCAATTGCAACTGGTGGATTTGCTGACAAGACCGGAAAGTTCGCTGTTGGGGATAAAGTACTTGCCACCAGTGCAGTTTTTGGGGATGAAATATGGCCTGCTTCTGAATATGGGAGGACAATGTACACCATTCGCCAAAGGGTCGGTCCATTACTCATGAGAATGCAGAAGAGATACGGAAAGTTAGACACTTCAGGTGAACTAACTGAGAAGGAGATTATCAGAGCTGAAAGGAATTCTGGTATAGTAAGCGGCAAACTGAGGGAAATCCAAATGCAAAATTACTTGAGGAAAAAGGAACAGAAAGCACAGAGAGATAGCGATCTTCGAGTAGGGCTGCAGCTTTACAAGAGTGGCAAATATGAGGAAGCACTGGAAAAATTTGAGTCTGTATTAGGTTCAAAGCCAGACACATTTGAAGCTTCAGTCGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGTTAAAAGCTGGAATCTCTGCACTTGAGGAAGCCCTGAAATCTGGATTTGAAGACTTCAAGAGAATCCGGAGTGATCCTGACCTCGCCAATCTAAGAACATCTGAGGAATTTGATCCTCTATTAAAAAGATTTGATGAATCATTTATCAATGAGAATGCCATCAATGCCATCAAATCTCTATTTGGCTTCAACAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.89

Weight (kDa)

6.79

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	864
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	2 cut(s)	866, 905
AcsI	RAATTY	4 cut(s)	290, 562, 707, 905
AcuI	CTGAAG	2 cut(s)	504, 735
AfaI	GTAC	2 cut(s)	387, 452
AgsI	TTSAA	5 cut(s)	729, 746, 848, 856, 988
AluBI	AGCT	9 cut(s)	11, 59, 132, 160, 554, 670, 749, 790, 806
AluI	AGCT	9 cut(s)	11, 59, 132, 160, 554, 670, 749, 790, 806
Alw26I	GTCTC	2 cut(s)	122, 201
AlwI	GGATC	2 cut(s)	866, 905
AlwNI	CAGNNNCTG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	864
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	59, 664, 667
ApoI	RAATTY	4 cut(s)	290, 562, 707, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	4 cut(s)	14, 33, 236, 536
AvaII	GGWCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	46, 651, 679
BccI	CCATC	3 cut(s)	302, 965, 974
BcoDI	GTCTC	2 cut(s)	122, 201
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	60, 580, 665, 668
BlsI	GCNGC	4 cut(s)	61, 581, 666, 669
BmcAI	AGTACT	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmsI	GCATC	2 cut(s)	191, 316
BpiI	GAAGAC	1 cut(s)	855
BpuEI	CTTGAG	2 cut(s)	634, 842
BsaBI	GATNNNNATC	1 cut(s)	648
BsaWI	WCCGGW	2 cut(s)	359, 864
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	6 cut(s)	18, 113, 156, 343, 396, 705
Bse3DI	GCAATG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	648
BseAI	TCCGGA	1 cut(s)	864
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	5 cut(s)	133, 183, 525, 578, 891
BseNI	ACTGG	6 cut(s)	18, 113, 156, 343, 396, 705
BseRI	GAGGAG	3 cut(s)	246, 249, 266
BseXI	GCAGC	3 cut(s)	46, 651, 679
BsgI	GTGCAG	2 cut(s)	420, 801
BshFI	GGCC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	360, 865
BsmAI	GTCTC	2 cut(s)	122, 201
BsmI	GAATGC	2 cut(s)	495, 958
BsnI	GGCC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	864
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	649, 871, 910
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	5 cut(s)	132, 184, 526, 579, 892
BspEI	TCCGGA	1 cut(s)	864
BspHI	TCATGA	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	2 cut(s)	866, 905
BsrDI	GCAATG	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	6 cut(s)	18, 113, 156, 343, 396, 705
BssMI	GATC	3 cut(s)	649, 871, 910
Bst6I	CTCTTC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	7 cut(s)	119, 192, 534, 587, 786, 890, 900
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	3 cut(s)	652, 874, 913
BstMAI	GTCTC	2 cut(s)	122, 201
BstMBI	GATC	3 cut(s)	649, 871, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 283, 398, 755, 962
BstSFI	CTRYAG	1 cut(s)	665
BstV1I	GCAGC	3 cut(s)	46, 651, 679
BstV2I	GAAGAC	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	403, 698
Cac8I	GCNNGC	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	191
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	386, 451
CviAII	CATG	2 cut(s)	114, 484
CviQI	GTAC	2 cut(s)	386, 451
DdeI	CTNAG	7 cut(s)	119, 192, 534, 587, 786, 890, 900
DpnI	GATC	3 cut(s)	651, 873, 912
DpnII	GATC	3 cut(s)	649, 871, 910
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	504, 735
EcoRI	GAATTC	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	2 cut(s)	117, 487
FatI	CATG	2 cut(s)	113, 483
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	60, 580, 665, 668
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	60, 580, 665, 668
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	60, 580, 665, 668
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	2 cut(s)	360, 865
Hin1II	CATG	2 cut(s)	117, 487
HindIII	AAGCTT	2 cut(s)	747, 788
HinfI	GANTC	5 cut(s)	194, 713, 810, 861, 935
HpaII	CCGG	2 cut(s)	360, 865
HphI	GGTGA	4 cut(s)	14, 33, 236, 536
Hpy166II	GTNNAC	2 cut(s)	453, 527
Hpy188I	TCNGA	4 cut(s)	187, 433, 551, 901
Hpy188III	TCNNGA	6 cut(s)	305, 484, 840, 856, 865, 875
Hpy8I	GTNNAC	2 cut(s)	453, 527
HpyAV	CCTTC	3 cut(s)	209, 221, 532
HpyCH4V	TGCA	8 cut(s)	296, 329, 335, 401, 493, 604, 667, 818
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 283, 398, 755, 962
HpyF3I	CTNAG	7 cut(s)	119, 192, 534, 587, 786, 890, 900
Hsp92II	CATG	2 cut(s)	117, 487
Kpn2I	TCCGGA	1 cut(s)	864
Kzo9I	GATC	3 cut(s)	649, 871, 910
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	3 cut(s)	46, 651, 679
LweI	GCATC	2 cut(s)	191, 316
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	20, 761
MalI	GATC	3 cut(s)	651, 873, 912
MboI	GATC	3 cut(s)	649, 871, 910
MboII	GAAGA	4 cut(s)	30, 508, 644, 860
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	6 cut(s)	290, 330, 562, 607, 707, 905
MlyI	GAGTC	2 cut(s)	203, 722
MmeI	TCCRAC	2 cut(s)	38, 224
MroI	TCCGGA	1 cut(s)	864
MseI	TTAA	3 cut(s)	792, 800, 920
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	2 cut(s)	360, 865
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	495, 958
MwoI	GCNNNNNNNGC	5 cut(s)	129, 283, 398, 755, 962
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	649, 871, 910
NlaIII	CATG	2 cut(s)	117, 487
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	483
PctI	GAATGC	2 cut(s)	495, 958
PfeI	GAWTC	3 cut(s)	810, 861, 935
PkrI	GCNGC	4 cut(s)	61, 581, 666, 669
PleI	GAGTC	2 cut(s)	202, 721
PpsI	GAGTC	2 cut(s)	202, 721
PspPI	GGNCC	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	669
PstNI	CAGNNNCTG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	387, 452
RsaNI	GTAC	2 cut(s)	386, 451
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	3 cut(s)	792, 800, 920
SatI	GCNGC	4 cut(s)	60, 580, 665, 668
Sau3AI	GATC	3 cut(s)	649, 871, 910
Sau96I	GGNCC	1 cut(s)	473
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	2 cut(s)	203, 722
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	2 cut(s)	191, 316
SfcI	CTRYAG	1 cut(s)	665
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	613, 821
SmoI	CTYRAG	2 cut(s)	613, 821
Sse9I	AATT	6 cut(s)	290, 330, 562, 607, 707, 905
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	129
TaqI	TCGA	2 cut(s)	304, 655
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	6 cut(s)	290, 330, 562, 607, 707, 905
TatI	WGTACW	2 cut(s)	385, 450
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	3 cut(s)	810, 861, 935
Tru1I	TTAA	3 cut(s)	792, 800, 920
Tru9I	TTAA	3 cut(s)	792, 800, 920
TscAI	CASTG	2 cut(s)	403, 705
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	59, 664, 667
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	160, 255, 429, 948
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	403, 705
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	4 cut(s)	290, 562, 707, 905
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.