Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

248191 .. 250866

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1002900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTTTGGCTTCAACAAGTCACCTGTCTCTCTGTTCTTCACCGCCATTGCCACCAAGAAGTGCTTTGACCAAGCAGCAGAACCACCACCCACTTCTGTTTTCTCCGACCAAGAATTTCTCTGGTCTGAGCACTTCAAGCTGTTTTCTCAACACCCATTTAGTAAGACTGTCTGTTTTCGTCGTAAAAGCATCGGAAACTGAGTCGAAACCAGCAGAGAGTGGAAGTGAAGGAGGAGGAGAGGGAAAAGGAAAACCAGAAGCATATGAAGAGTATGAGGTGGAAGTGGTGCAGCCTTACGGGCTGAAATTCTCCAAGGGCCGAGACGGCGGAACTTACATTGATGCCATTGCGCCCGGTGGATCTGCTGACAAAACTGGCAAGTTCACCGTTGGCGATAAAGTTGTTGCCACAAGTGCAGTTTTTGGGGATGAAATATGGCCTGCTGCCGAGTATGGGAGGACAATGTACACCATTCGCCAGAGGATCGGTCCACTTCTCATGCGAATGCAGAAGAGATACGGCAATTTAGATACTTCAGGTGAATTAACAGAAAAGGAGATTATCAGAGCTGAGAGGAATTCTGGTGTAATTAGCGGAAAATTGAGGGATATCCAAATGCAAAACTACCTGAGGAAAAAGGAACAAAAGGCGCAGAGAGAAAGTGAACTTCGACAAGGCCTCCAGCTTTATAAGGGCGGGAAATATGAGGAAGCATTGGAGAAATTTGAATCTGTGCTAGGATCAAAACCTGAGTTAGATGAAGCTTCAGTGGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGATACAAGCTGGGATCTCTGCACTTGAGGATGCCCTGAAAGCTGGATTTGAAGACTTCAAGAGAATTCGGACTGATCCTGACCTAGAGAATTTAAGAAAATCTGATGCTTTTGATCCTCTATTGAAAAGATTTGACGAATCATTCATCAACGAAAATGCCATCAACGCCATAAAATCTATATTTGGCATTTTCGACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.46

Weight (kDa)

7.6

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AciI	CCGC	4 cut(s)	44, 330, 597, 699
AclWI	GGATC	6 cut(s)	370, 494, 751, 836, 884, 923
AcsI	RAATTY	6 cut(s)	115, 308, 580, 725, 879, 904
AcuI	CTGAAG	2 cut(s)	522, 753
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	6 cut(s)	15, 138, 731, 866, 874, 940
AluBI	AGCT	7 cut(s)	141, 572, 688, 767, 808, 824, 857
AluI	AGCT	7 cut(s)	141, 572, 688, 767, 808, 824, 857
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	33, 318
AlwI	GGATC	6 cut(s)	370, 494, 751, 836, 884, 923
AoxI	GGCC	3 cut(s)	319, 440, 679
ApeKI	GCWGC	3 cut(s)	76, 292, 446
ApoI	RAATTY	6 cut(s)	115, 308, 580, 725, 879, 904
AspLEI	GCGC	2 cut(s)	355, 655
AspS9I	GGNCC	2 cut(s)	319, 491
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	4 cut(s)	14, 33, 379, 554
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	88, 304, 433
BccI	CCATC	1 cut(s)	983
BceAI	ACGGC	2 cut(s)	343, 538
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	33, 318
BfaI	CTAG	2 cut(s)	740, 899
BglI	GCCNNNNNGGC	2 cut(s)	301, 327
BisI	GCNGC	3 cut(s)	77, 293, 447
BlsI	GCNGC	3 cut(s)	78, 294, 448
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	319, 491
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	4 cut(s)	200, 334, 835, 910
BpiI	GAAGAC	1 cut(s)	873
BpmI	CTGGAG	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	632
Bse3DI	GCAATG	2 cut(s)	47, 348
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	436, 850
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMI	GCAATG	2 cut(s)	47, 348
BseMII	CTCAG	5 cut(s)	119, 192, 564, 623, 744
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	249, 252
BseXI	GCAGC	3 cut(s)	88, 304, 433
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	3 cut(s)	311, 438, 819
BshFI	GGCC	3 cut(s)	321, 442, 681
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	33, 318
BsmBI	CGTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	321, 442, 681
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
BspACI	CCGC	4 cut(s)	44, 330, 597, 699
BspANI	GGCC	3 cut(s)	321, 442, 681
BspCNI	CTCAG	5 cut(s)	120, 193, 565, 624, 745
BspPI	GGATC	6 cut(s)	370, 494, 751, 836, 884, 923
BsrDI	GCAATG	2 cut(s)	47, 348
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	171, 391
Bst6I	CTCTTC	2 cut(s)	264, 509
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	6 cut(s)	128, 201, 573, 632, 753, 804
BstF5I	GGATG	2 cut(s)	436, 850
BstHHI	GCGC	2 cut(s)	355, 655
BstKTI	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
BstMAI	GTCTC	2 cut(s)	33, 318
BstMBI	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
BstMWI	GCNNNNNNNGC	7 cut(s)	138, 301, 327, 416, 773, 854, 980
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	88, 304, 433
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	362, 828
BstYI	RGATCY	2 cut(s)	362, 828
Bsu36I	CCTNAGG	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	321, 442, 681
BtsCI	GGATG	2 cut(s)	436, 850
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	2 cut(s)	355, 655
Cfr13I	GGNCC	2 cut(s)	319, 491
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	1 cut(s)	502
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	6 cut(s)	128, 201, 573, 632, 753, 804
DpnI	GATC	6 cut(s)	364, 488, 745, 830, 891, 930
DpnII	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
Eam1104I	CTCTTC	2 cut(s)	264, 509
EarI	CTCTTC	2 cut(s)	264, 509
EciI	GGCGGA	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	2 cut(s)	522, 753
Eco81I	CCTNAGG	1 cut(s)	632
EcoRI	GAATTC	2 cut(s)	580, 879
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	1 cut(s)	505
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	1 cut(s)	501
FauI	CCCGC	1 cut(s)	692
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	77, 293, 447
FokI	GGATG	2 cut(s)	443, 857
Fsp4HI	GCNGC	3 cut(s)	77, 293, 447
FspBI	CTAG	2 cut(s)	740, 899
GlaI	GCGC	2 cut(s)	354, 654
GluI	GCNGC	3 cut(s)	77, 293, 447
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	321, 442, 681
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	2 cut(s)	355, 655
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	2 cut(s)	353, 653
HinP1I	GCGC	2 cut(s)	353, 653
HindIII	AAGCTT	2 cut(s)	765, 806
HinfI	GANTC	3 cut(s)	203, 731, 953
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	4 cut(s)	14, 33, 379, 554
Hpy166II	GTNNAC	4 cut(s)	387, 471, 494, 668
Hpy188I	TCNGA	7 cut(s)	108, 129, 196, 569, 816, 885, 919
Hpy188III	TCNNGA	2 cut(s)	874, 893
Hpy8I	GTNNAC	4 cut(s)	387, 471, 494, 668
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	171, 391
HpyCH4V	TGCA	5 cut(s)	292, 419, 511, 622, 836
HpyF10VI	GCNNNNNNNGC	7 cut(s)	138, 301, 327, 416, 773, 854, 980
HpyF3I	CTNAG	6 cut(s)	128, 201, 573, 632, 753, 804
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	2 cut(s)	353, 653
Kzo9I	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
Lsp1109I	GCAGC	3 cut(s)	88, 304, 433
LweI	GCATC	4 cut(s)	200, 334, 835, 910
MaeI	CTAG	2 cut(s)	740, 899
MaeIII	GTNAC	2 cut(s)	20, 779
MalI	GATC	6 cut(s)	364, 488, 745, 830, 891, 930
MboI	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
MboII	GAAGA	4 cut(s)	30, 281, 526, 878
MflI	RGATCY	2 cut(s)	362, 828
MhlI	GDGCHC	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	131
MseI	TTAA	3 cut(s)	548, 810, 908
MslI	CAYNNNNRTG	1 cut(s)	506
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	7 cut(s)	138, 301, 327, 416, 773, 854, 980
NciI	CCSGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
NlaIII	CATG	1 cut(s)	505
NmeAIII	GCCGAG	2 cut(s)	347, 475
NmuCI	GTSAC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	681
PctI	GAATGC	1 cut(s)	513
PfeI	GAWTC	2 cut(s)	731, 953
PkrI	GCNGC	3 cut(s)	78, 294, 448
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	824
PspPI	GGNCC	2 cut(s)	319, 491
PsuI	RGATCY	2 cut(s)	362, 828
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	548, 810, 908
SatI	GCNGC	3 cut(s)	77, 293, 447
Sau3AI	GATC	6 cut(s)	362, 486, 743, 828, 889, 928
Sau96I	GGNCC	2 cut(s)	319, 491
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	4 cut(s)	200, 334, 835, 910
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SseBI	AGGCCT	1 cut(s)	681
SsiI	CCGC	4 cut(s)	44, 330, 597, 699
SspMI	CTAG	2 cut(s)	740, 899
StuI	AGGCCT	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	171, 391
TaqI	TCGA	3 cut(s)	206, 673, 1008
TaqII	GACCGA	1 cut(s)	479
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	731, 953
Tru1I	TTAA	3 cut(s)	548, 810, 908
Tru9I	TTAA	3 cut(s)	548, 810, 908
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	76, 292, 446
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	282, 447, 777, 949
TspRI	CASTG	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	6 cut(s)	115, 308, 580, 725, 879, 904
XspI	CTAG	2 cut(s)	740, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.