Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

224519 .. 227795

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1003100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTTTAGCTCCAACAAGTCACCTGTCTCTGTGTTCTGCACCGCCAATGCCAAGAACTTCTTTGACCAAGCAGCAGAACAACCACCCACTTGTGTTTTTTCCGACCAAGAATTTCTCAGTTCTGAGCACTTCAAGCAGTTTCCTCGGCGCCCGTTCGGTTAGACTGTCTATTTTCTTAGTAAAAACATCGGAAACTGAGTCGAAACCAGCAGAGAGTGGAAGTGAAGGAGGAGGAGAAGGAGAAGGAGAAGGAAAACCAGAAGCATATGAAGAGTATGAGGTGGAAGTGGTGAAGCCTTACGGGCTGAAATTCTCCAAGGGCCGAGATGGTGGAACTTACATTGATGCCATTGCGCCCGGTGGATCTGCTGACAAGACTGGCAAGTTCACTGTTGGGGATAAAGTTATTGCCACAAGTGCAGTTTTTGGGGATGAAATATGGCCTGCTGCCGAGTATGGGAGGACAATGTACACTATTCGCCAGAGGATCGGTCCACTTCTCATGCGAATGCAGAAGAGATACGGCAATTTAGATACTTCAGGTGAATTAACGGAAAAGGAGATTATCAGAGCTGAGAGGAATTCTGGTGTAATTAGCGGAAGATTGAGGGATATCCAAATGCAAAACTATATGAGGAAAAAGGAACAAAAAGCTCAGAGAGAAAGTGACCTTCGACAAGGCCTCCAGCTTTACAAGGGTGGCAAATATGAGGAAGCATTGGAGAAATTTGAATCTGTACTAGGATCAAAACCAGAGTTAGATGAAGCTTCCATTGCAAGTTACAATGTTGCTTGTTGCTATTCTAAGCTTAATCAGATACAAGCTGGGATCTCAGCACTTGAGGATGCCTTGAAAGCTGGATTTGAAGACTTCAAGAGAATCCGGACTGATCCCGACCTAGAGAATGTAAGAAAATCTGAGGAATTTGATCCTCTATTGAAAAGATTTGACGAATCATTCATCAACGAGAATGCCATCAACGCAATCAAATCTATATTTGGCATTTTCAACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.72

Weight (kDa)

6.8

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	885
AciI	CCGC	2 cut(s)	44, 600
AclWI	GGATC	6 cut(s)	373, 497, 754, 839, 887, 926
AcsI	RAATTY	5 cut(s)	112, 311, 583, 728, 926
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	473, 741
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	7 cut(s)	135, 734, 856, 869, 877, 943, 1012
AluBI	AGCT	8 cut(s)	11, 575, 656, 691, 770, 811, 827, 860
AluI	AGCT	8 cut(s)	11, 575, 656, 691, 770, 811, 827, 860
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	6 cut(s)	373, 497, 754, 839, 887, 926
Aor13HI	TCCGGA	1 cut(s)	885
AoxI	GGCC	3 cut(s)	322, 443, 682
ApeKI	GCWGC	2 cut(s)	73, 449
ApoI	RAATTY	5 cut(s)	112, 311, 583, 728, 926
AspLEI	GCGC	2 cut(s)	152, 358
AspS9I	GGNCC	2 cut(s)	322, 494
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	14, 304, 557
AvaII	GGWCC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	85, 436
BccI	CCATC	2 cut(s)	323, 986
BceAI	ACGGC	1 cut(s)	541
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	743, 902
BfoI	RGCGCY	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	74, 450
BlsI	GCNGC	2 cut(s)	75, 451
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	322, 494
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	337, 838
BpiI	GAAGAC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	145, 318
BsaWI	WCCGGW	1 cut(s)	885
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	2 cut(s)	351, 774
BseAI	TCCGGA	1 cut(s)	885
BseDI	CCNNGG	2 cut(s)	145, 318
BseGI	GGATG	2 cut(s)	439, 853
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	351, 774
BseMII	CTCAG	7 cut(s)	116, 132, 189, 567, 671, 849, 912
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	246, 249
BseXI	GCAGC	2 cut(s)	85, 436
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	2 cut(s)	24, 441
BshFI	GGCC	3 cut(s)	324, 445, 684
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	360, 886
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	33
BsmI	GAATGC	2 cut(s)	516, 979
BsnI	GGCC	3 cut(s)	324, 445, 684
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	885
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
BspACI	CCGC	2 cut(s)	44, 600
BspANI	GGCC	3 cut(s)	324, 445, 684
BspCNI	CTCAG	7 cut(s)	117, 131, 190, 568, 670, 848, 913
BspEI	TCCGGA	1 cut(s)	885
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	6 cut(s)	373, 497, 754, 839, 887, 926
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	351, 774
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	145, 318
BssMI	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	168, 394
Bst6I	CTCTTC	2 cut(s)	267, 512
BstACI	GRCGYC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	9 cut(s)	118, 125, 178, 198, 576, 657, 807, 835, 921
BstF5I	GGATG	2 cut(s)	439, 853
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 358
BstKTI	GATC	6 cut(s)	368, 492, 749, 834, 895, 934
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 304, 419, 776, 857, 983
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	85, 436
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	2 cut(s)	365, 831
BstYI	RGATCY	2 cut(s)	365, 831
BsuRI	GGCC	3 cut(s)	324, 445, 684
BtsCI	GGATG	2 cut(s)	439, 853
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	2 cut(s)	152, 358
Cfr13I	GGNCC	2 cut(s)	322, 494
Csp6I	GTAC	2 cut(s)	472, 740
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	2 cut(s)	472, 740
DdeI	CTNAG	9 cut(s)	118, 125, 178, 198, 576, 657, 807, 835, 921
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	6 cut(s)	367, 491, 748, 833, 894, 933
DpnII	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
Eam1104I	CTCTTC	2 cut(s)	267, 512
EarI	CTCTTC	2 cut(s)	267, 512
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	583
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	318
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	508
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	74, 450
FokI	GGATG	2 cut(s)	446, 860
Fsp4HI	GCNGC	2 cut(s)	74, 450
FspBI	CTAG	2 cut(s)	743, 902
GlaI	GCGC	2 cut(s)	151, 357
GluI	GCNGC	2 cut(s)	74, 450
GsaI	CCCAGC	1 cut(s)	831
GsuI	CTGGAG	1 cut(s)	671
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	324, 445, 684
HapII	CCGG	2 cut(s)	360, 886
HhaI	GCGC	2 cut(s)	152, 358
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	150, 356
HinP1I	GCGC	2 cut(s)	150, 356
HindIII	AAGCTT	2 cut(s)	768, 809
HinfI	GANTC	4 cut(s)	200, 734, 882, 956
HpaII	CCGG	2 cut(s)	360, 886
HphI	GGTGA	3 cut(s)	14, 304, 557
Hpy166II	GTNNAC	3 cut(s)	390, 474, 497
Hpy188I	TCNGA	7 cut(s)	105, 126, 193, 572, 660, 819, 922
Hpy188III	TCNNGA	3 cut(s)	877, 886, 896
Hpy8I	GTNNAC	3 cut(s)	390, 474, 497
HpyAV	CCTTC	5 cut(s)	221, 233, 239, 245, 683
HpyCH4III	ACNGT	2 cut(s)	168, 394
HpyCH4V	TGCA	5 cut(s)	41, 422, 514, 625, 779
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 304, 419, 776, 857, 983
HpyF3I	CTNAG	9 cut(s)	118, 125, 178, 198, 576, 657, 807, 835, 921
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	150, 356
KasI	GGCGCC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	885
Kzo9I	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	85, 436
LweI	GCATC	2 cut(s)	337, 838
MaeI	CTAG	2 cut(s)	743, 902
MaeIII	GTNAC	3 cut(s)	20, 668, 782
MalI	GATC	6 cut(s)	367, 491, 748, 833, 894, 933
MboI	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
MboII	GAAGA	4 cut(s)	284, 529, 615, 881
MflI	RGATCY	2 cut(s)	365, 831
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	8 cut(s)	112, 311, 529, 548, 583, 594, 728, 926
Mly113I	GGCGCC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	38, 128
MroI	TCCGGA	1 cut(s)	885
MseI	TTAA	2 cut(s)	551, 813
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	2 cut(s)	360, 886
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	2 cut(s)	516, 979
MwoI	GCNNNNNNNGC	6 cut(s)	135, 304, 419, 776, 857, 983
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	151
NmeAIII	GCCGAG	3 cut(s)	126, 350, 478
NmuCI	GTSAC	2 cut(s)	20, 668
PceI	AGGCCT	1 cut(s)	684
PctI	GAATGC	2 cut(s)	516, 979
PfeI	GAWTC	3 cut(s)	734, 882, 956
PkrI	GCNGC	2 cut(s)	75, 451
PleI	GAGTC	1 cut(s)	208
PluTI	GGCGCC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	827
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	322, 494
PsuI	RGATCY	2 cut(s)	365, 831
RsaI	GTAC	2 cut(s)	473, 741
RsaNI	GTAC	2 cut(s)	472, 740
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	551, 813
SatI	GCNGC	2 cut(s)	74, 450
Sau3AI	GATC	6 cut(s)	365, 489, 746, 831, 892, 931
Sau96I	GGNCC	2 cut(s)	322, 494
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	2 cut(s)	337, 838
SfoI	GGCGCC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	8 cut(s)	112, 311, 529, 548, 583, 594, 728, 926
SseBI	AGGCCT	1 cut(s)	684
SsiI	CCGC	2 cut(s)	44, 600
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	2 cut(s)	743, 902
StuI	AGGCCT	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	168, 394
TaqI	TCGA	2 cut(s)	203, 676
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	8 cut(s)	112, 311, 529, 548, 583, 594, 728, 926
TatI	WGTACW	2 cut(s)	471, 739
TfiI	GAWTC	3 cut(s)	734, 882, 956
Tru1I	TTAA	2 cut(s)	551, 813
Tru9I	TTAA	2 cut(s)	551, 813
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	20, 668
TseI	GCWGC	2 cut(s)	73, 449
Tsp45I	GTSAC	2 cut(s)	20, 668
TspDTI	ATGAA	4 cut(s)	285, 450, 780, 952
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	5 cut(s)	112, 311, 583, 728, 926
XspI	CTAG	2 cut(s)	743, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.