Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

67044013 .. 67045394

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0486800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATTTCAAAAGAAACCATGTGATCAGTGCCATATTCATCATCTTAGGGAATTTGGCTTCTCAAGCCACATCCGATGCATTGTACGAATCTTCCATTGCCGAAAAACATGAGCATTGGATGGCAAAGCATGGACGCGTTTACCCCAATGCGGCAGAGAAGGAAAGGCGTTTCGGCATCTTCAGGAAGAATGTCGAATACGTGGAGAAGTTCAACAATGAAGGGAATAAGACTTACAAGTTGAACATCAACAGCTTTGCGGATATGACCAACGAAGAATTCCGGAGACATCATACCGGATACAGAACCCCCCCCGGCTTAAGTTCAACGTCATCCAATTTTAGCTACCAAAGCTTGGCTGCTACTGATATTCCAACTACCGTGGACTGGAGGGAACAACAAGCTGTCACCCCCATAAAGTATCAAAGTCAATGCGGTGCTTGCTGGGCATTTGCAGTAGCAGCAACTGTGGAAGGGCTAACCAAAATCAAAACCGGCCAATTGATCTCACTCTCCGAGCAGCAACTTGTGGACTGCAATCATCAGAACCATGGGTGCAAGGGTGGTTCCTTAGAATACGCCTATTCCTACGTAGTACAAAACGGAGGACTCGCTCGTGAAGAAACTTACCCTTACCAGGCAACAGACATGGGAACATGCGATACTAACAAGGAAAGTGAGCATGCGGCACAGATCACTGGCTATGAACGCGTCCTTTCCAGAAGTGAAAACGATCTACAGAAGGCTGTGGCCATGCAACCAGTATCGGTTACCATTTCTGCTTATGGACAAGATTTTCAGATGTACGGCAGTGGGGTGTTCTCCGGCTATTGTGGGACGGAGCTCGACCACGCCGTCACGGTCATTGGCTACGGAACGATTGAAGATGGAACCCCCTATTGGTTAATAAAGAACTCATGGGGGCAGAGTTGGGGTGAAAGTGGGTATATGAGAATTCTTAGAAACATTAATTTCCCAGAGGGTATGTGCGGCCTTGCTATCAATCCCCTCTATCCGACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.06

Weight (kDa)

5.82

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	37 - 94	2.7e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	124 - 339	3.2e-79	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	854
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccII	CGCG	2 cut(s)	138, 711
AccIII	TCCGGA	1 cut(s)	282
AciI	CCGC	5 cut(s)	152, 260, 435, 686, 990
AcoI	YGGCCR	2 cut(s)	496, 750
AcsI	RAATTY	3 cut(s)	52, 278, 954
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	3 cut(s)	86, 597, 806
AfiI	CCNNNNNNNGG	5 cut(s)	151, 355, 387, 637, 900
AflII	CTTAAG	1 cut(s)	319
AflIII	ACRYGT	2 cut(s)	136, 709
AgsI	TTSAA	5 cut(s)	10, 214, 244, 327, 884
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	4 cut(s)	263, 295, 883, 915
AluBI	AGCT	5 cut(s)	255, 345, 354, 404, 844
AluI	AGCT	5 cut(s)	255, 345, 354, 404, 844
Alw21I	GWGCWC	1 cut(s)	846
Alw26I	GTCTC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	282
AoxI	GGCC	3 cut(s)	496, 750, 991
ApeKI	GCWGC	3 cut(s)	359, 461, 520
ApoI	RAATTY	3 cut(s)	52, 278, 954
AseI	ATTAAT	1 cut(s)	969
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	400, 947
BalI	TGGCCA	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	846
BauI	CACGAG	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	3 cut(s)	346, 473, 532
BccI	CCATC	2 cut(s)	115, 881
BceAI	ACGGC	2 cut(s)	823, 839
BciT130I	CCWGG	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	737
BfrI	CTTAAG	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	6 cut(s)	153, 360, 462, 521, 687, 991
BlsI	GCNGC	6 cut(s)	154, 361, 463, 522, 688, 992
Bme1390I	CCNGG	2 cut(s)	315, 638
BmiI	GGNNCC	2 cut(s)	568, 892
BmrFI	CCNGG	2 cut(s)	315, 638
BmsI	GCATC	2 cut(s)	67, 186
BpmI	CTGGAG	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	315
BsaAI	YACGTR	2 cut(s)	202, 592
BsaJI	CCNNGG	3 cut(s)	313, 381, 550
BsaWI	WCCGGW	2 cut(s)	282, 296
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 355, 387, 637, 900
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	3 cut(s)	392, 703, 761
Bse3DI	GCAATG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	3 cut(s)	313, 381, 550
BseGI	GGATG	3 cut(s)	71, 126, 332
BseLI	CCNNNNNNNGG	5 cut(s)	151, 355, 387, 637, 900
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	3 cut(s)	392, 703, 761
BseXI	GCAGC	3 cut(s)	346, 473, 532
BseYI	CCCAGC	1 cut(s)	444
Bsh1236I	CGCG	2 cut(s)	138, 711
BshFI	GGCC	3 cut(s)	498, 752, 993
BsiHKAI	GWGCWC	1 cut(s)	846
BsiSI	CCGG	5 cut(s)	283, 297, 315, 495, 825
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	5 cut(s)	151, 355, 387, 637, 900
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	850
BsnI	GGCC	3 cut(s)	498, 752, 993
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp13I	TCCGGA	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	24, 504, 693, 733
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	5 cut(s)	152, 260, 435, 686, 990
BspANI	GGCC	3 cut(s)	498, 752, 993
BspEI	TCCGGA	1 cut(s)	282
BspFNI	CGCG	2 cut(s)	138, 711
BspLI	GGNNCC	2 cut(s)	568, 892
BspTI	CTTAAG	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	392, 703, 761
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	313, 381, 550
BssMI	GATC	4 cut(s)	24, 504, 693, 733
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	550
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	3 cut(s)	382, 469, 862
BstAFI	CTTAAG	1 cut(s)	319
BstBAI	YACGTR	2 cut(s)	202, 592
BstC8I	GCNNGC	2 cut(s)	442, 684
BstDEI	CTNAG	3 cut(s)	46, 571, 959
BstDSI	CCRYGG	2 cut(s)	381, 550
BstEII	GGTNACC	1 cut(s)	769
BstF5I	GGATG	3 cut(s)	71, 126, 332
BstFNI	CGCG	2 cut(s)	138, 711
BstKTI	GATC	4 cut(s)	27, 507, 696, 736
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	24, 504, 693, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 351, 441, 446, 461, 708
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	2 cut(s)	660, 686
BstPI	GGTNACC	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	313, 636
BstSFI	CTRYAG	1 cut(s)	737
BstSNI	TACGTA	1 cut(s)	592
BstUI	CGCG	2 cut(s)	138, 711
BstV1I	GCAGC	3 cut(s)	346, 473, 532
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	498, 752, 993
BtgI	CCRYGG	2 cut(s)	381, 550
BtsCI	GGATG	3 cut(s)	71, 126, 332
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	3 cut(s)	34, 696, 817
Cac8I	GCNNGC	2 cut(s)	442, 684
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	494
CseI	GACGC	2 cut(s)	144, 700
Csp6I	GTAC	3 cut(s)	85, 596, 805
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	9 cut(s)	20, 110, 131, 551, 649, 657, 683, 754, 918
CviQI	GTAC	3 cut(s)	85, 596, 805
DdeI	CTNAG	3 cut(s)	46, 571, 959
DpnI	GATC	4 cut(s)	26, 506, 695, 735
DpnII	GATC	4 cut(s)	24, 504, 693, 733
DrdI	GACNNNNNNGTC	1 cut(s)	854
DseDI	GACNNNNNNGTC	1 cut(s)	854
EaeI	YGGCCR	2 cut(s)	496, 750
Ecl136II	GAGCTC	1 cut(s)	844
Eco105I	TACGTA	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	846
Eco53kI	GAGCTC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	844
EcoO65I	GGTNACC	1 cut(s)	769
EcoRI	GAATTC	2 cut(s)	278, 954
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	9 cut(s)	23, 113, 134, 554, 652, 660, 686, 757, 921
FaqI	GGGAC	1 cut(s)	850
FatI	CATG	9 cut(s)	19, 109, 130, 550, 648, 656, 682, 753, 917
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	6 cut(s)	153, 360, 462, 521, 687, 991
FokI	GGATG	3 cut(s)	58, 133, 319
FriOI	GRGCYC	1 cut(s)	846
Fsp4HI	GCNGC	6 cut(s)	153, 360, 462, 521, 687, 991
GluI	GCNGC	6 cut(s)	153, 360, 462, 521, 687, 991
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	498, 752, 993
HapII	CCGG	5 cut(s)	283, 297, 315, 495, 825
HgaI	GACGC	2 cut(s)	144, 700
Hin1II	CATG	9 cut(s)	23, 113, 134, 554, 652, 660, 686, 757, 921
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	2 cut(s)	89, 609
HpaII	CCGG	5 cut(s)	283, 297, 315, 495, 825
HphI	GGTGA	2 cut(s)	400, 947
Hpy166II	GTNNAC	3 cut(s)	142, 385, 532
Hpy188I	TCNGA	5 cut(s)	76, 517, 546, 801, 1017
Hpy188III	TCNNGA	4 cut(s)	184, 283, 617, 720
Hpy8I	GTNNAC	3 cut(s)	142, 385, 532
HpyAV	CCTTC	4 cut(s)	154, 215, 467, 736
HpyCH4III	ACNGT	3 cut(s)	382, 469, 862
HpyCH4IV	ACGT	3 cut(s)	201, 329, 591
HpyCH4V	TGCA	6 cut(s)	80, 455, 537, 558, 757, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 351, 441, 446, 461, 708
HpyF3I	CTNAG	3 cut(s)	46, 571, 959
HpySE526I	ACGT	3 cut(s)	201, 329, 591
Hsp92II	CATG	9 cut(s)	23, 113, 134, 554, 652, 660, 686, 757, 921
Kpn2I	TCCGGA	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	24, 504, 693, 733
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	3 cut(s)	346, 473, 532
LweI	GCATC	2 cut(s)	67, 186
MaeII	ACGT	3 cut(s)	201, 329, 591
MaeIII	GTNAC	3 cut(s)	406, 769, 856
MalI	GATC	4 cut(s)	26, 506, 695, 735
MboI	GATC	4 cut(s)	24, 504, 693, 733
MboII	GAAGA	6 cut(s)	84, 172, 199, 287, 632, 896
MfeI	CAATTG	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	846
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	6 cut(s)	52, 278, 337, 500, 954, 970
MluI	ACGCGT	2 cut(s)	136, 709
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	384, 599, 973, 1019
Mox20I	TGGCCA	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	320, 905, 969
Msp20I	TGGCCA	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	319
MspI	CCGG	5 cut(s)	283, 297, 315, 495, 825
MspR9I	CCNGG	2 cut(s)	315, 638
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	2 cut(s)	138, 711
MwoI	GCNNNNNNNGC	6 cut(s)	65, 351, 441, 446, 461, 708
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	4 cut(s)	24, 504, 693, 733
NlaIII	CATG	9 cut(s)	23, 113, 134, 554, 652, 660, 686, 757, 921
NlaIV	GGNNCC	2 cut(s)	568, 892
NmuCI	GTSAC	2 cut(s)	406, 856
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	2 cut(s)	660, 686
PaeI	GCATGC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	6 cut(s)	154, 361, 463, 522, 688, 992
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
Ppu21I	YACGTR	2 cut(s)	202, 592
PshBI	ATTAAT	1 cut(s)	969
Psp124BI	GAGCTC	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	636
PspEI	GGTNACC	1 cut(s)	769
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	568, 892
PsrI	GAACNNNNNNTAC	2 cut(s)	646, 678
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	86, 597, 806
RsaNI	GTAC	3 cut(s)	85, 596, 805
SacI	GAGCTC	1 cut(s)	846
SaqAI	TTAA	3 cut(s)	320, 905, 969
SatI	GCNGC	6 cut(s)	153, 360, 462, 521, 687, 991
Sau3AI	GATC	4 cut(s)	24, 504, 693, 733
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	315, 638
SduI	GDGCHC	1 cut(s)	846
SetI	ASST	8 cut(s)	204, 257, 332, 347, 356, 406, 594, 846
SfaNI	GCATC	2 cut(s)	67, 186
SfcI	CTRYAG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	63, 319
SmoI	CTYRAG	2 cut(s)	63, 319
SnaBI	TACGTA	1 cut(s)	592
SphI	GCATGC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	52, 278, 337, 500, 954, 970
SsiI	CCGC	5 cut(s)	152, 260, 435, 686, 990
SstI	GAGCTC	1 cut(s)	846
StyD4I	CCNGG	2 cut(s)	313, 636
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	382, 469, 862
TaiI	ACGT	3 cut(s)	204, 332, 594
TaqI	TCGA	2 cut(s)	195, 846
TasI	AATT	6 cut(s)	52, 278, 337, 500, 954, 970
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	3 cut(s)	155, 689, 993
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	320, 905, 969
Tru9I	TTAA	3 cut(s)	320, 905, 969
TscAI	CASTG	3 cut(s)	34, 703, 817
TseFI	GTSAC	2 cut(s)	406, 856
TseI	GCWGC	3 cut(s)	359, 461, 520
Tsp45I	GTSAC	2 cut(s)	406, 856
TspDTI	ATGAA	3 cut(s)	28, 234, 720
TspGWI	ACGGA	3 cut(s)	618, 854, 888
TspRI	CASTG	3 cut(s)	34, 703, 817
Van91I	CCANNNNNTGG	1 cut(s)	355
Vha464I	CTTAAG	1 cut(s)	319
VspI	ATTAAT	1 cut(s)	969
XapI	RAATTY	3 cut(s)	52, 278, 954
XceI	RCATGY	2 cut(s)	660, 686
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.