Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Reverse (-)

83203751 .. 83205729

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG586800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCTTTAGCTCCAACCAGTCACCTATCTCTCTATTTTTCCCCACCATTGCCAAGAGCTGCACTAACCAAGCACAACCCTCCTGTGTTTTCTCAAACCAACAATAAGAACTGGTCATGTCTCAGCACTTCTAGCTGTTTCCTCAATACCCAACTGGTAAAGCTATCCATTTTCATTGTAAGAGCATCAGAAACTAAGTCTCCAGCTGCTGAAAGTGAAGGTGGGGGTGATGAACCATATGAGGAGTATGAGGTAGAGATTATACAGCCTTATGGGATCAAATTTGCAAAGGGTCGAGATGGTGGAACTTACATTGATGCAATTGCACCTGGTGGATTTGCTGAAAAGACCGGAAAGTTTGCTGTTGGGGATAAAGTACTTGCCACCAGTGCAGTTTTTGGGGATGAAATATGGCCTGCTTCTGAATATGGGAGGACAATGTACACCATTCGCCAAAGGATCGGTCCATTACTCATGAGAATGCAGAAGAGATACGGAAAGTTAGACACTTCAGGTGAACTAACTGAGAAGGAGATTATCAGAGCTGAAAGGAATTCTGGCATAGTTAGCGGCAAACTGAGGGAAATCCAAATGCAAAATTACTTGAGGAAAAAGGAACAGAAAGCACAGAGAGAAAGCGATCTTCGAGTAGGGCTGCAGCTTTACAAGAGTGGCAAATATGAGGAAGCACTGGAAAAATTTGAGTCTGTATTAGGTTCAAAGCCAGATACATTTGAAGCTTCAGTCGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGGTAAAAGCTGGAATCTCTGCACTTGAGGAAGCCCTGAAATCTGGATTTGAAGACTTCAAGAGAATCCGGAGTGATCCTGACCTCGCCAATCTAAGAACATCTGAGGAATTTGATCCTCTATTAAAAAGATTTGATGAATCATTTATCAATGAGAATGCCATCAATGCCATCAAATCTCTATTTGGCTTCAACAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.73

Weight (kDa)

8.16

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	855
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	4 cut(s)	284, 467, 857, 896
AcsI	RAATTY	4 cut(s)	281, 553, 698, 896
AcuI	CTGAAG	2 cut(s)	495, 726
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	378, 443
AgsI	TTSAA	5 cut(s)	720, 737, 839, 847, 979
AjnI	CCWGG	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	125, 204
AlwI	GGATC	4 cut(s)	284, 467, 857, 896
AlwNI	CAGNNNCTG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	855
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	4 cut(s)	59, 206, 655, 658
ApoI	RAATTY	4 cut(s)	281, 553, 698, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	14, 239, 527
AvaII	GGWCC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	846
BbvI	GCAGC	4 cut(s)	46, 193, 642, 670
BccI	CCATC	3 cut(s)	293, 956, 965
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	125, 204
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	656
BisI	GCNGC	5 cut(s)	60, 207, 571, 656, 659
BlsI	GCNGC	5 cut(s)	61, 208, 572, 657, 660
BmcAI	AGTACT	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	194, 307
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	2 cut(s)	625, 833
BsaWI	WCCGGW	2 cut(s)	350, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse1I	ACTGG	5 cut(s)	18, 116, 159, 387, 696
Bse3DI	GCAATG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	4 cut(s)	136, 516, 569, 882
BseNI	ACTGG	5 cut(s)	18, 116, 159, 387, 696
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	46, 193, 642, 670
BsgI	GTGCAG	3 cut(s)	45, 411, 792
BshFI	GGCC	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	351, 856
BsmAI	GTCTC	2 cut(s)	125, 204
BsmI	GAATGC	2 cut(s)	486, 949
BsnI	GGCC	1 cut(s)	415
Bsp13I	TCCGGA	1 cut(s)	855
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	5 cut(s)	276, 459, 640, 862, 901
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	4 cut(s)	135, 517, 570, 883
BspEI	TCCGGA	1 cut(s)	855
BspHI	TCATGA	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	4 cut(s)	284, 467, 857, 896
BsrDI	GCAATG	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	5 cut(s)	18, 116, 159, 387, 696
BssMI	GATC	5 cut(s)	276, 459, 640, 862, 901
Bst2UI	CCWGG	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	7 cut(s)	122, 195, 525, 578, 777, 881, 891
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	5 cut(s)	279, 462, 643, 865, 904
BstMAI	GTCTC	2 cut(s)	125, 204
BstMBI	GATC	5 cut(s)	276, 459, 640, 862, 901
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 389, 567, 746, 953
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	656
BstV1I	GCAGC	4 cut(s)	46, 193, 642, 670
BstV2I	GAAGAC	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	394, 689
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	464
CsiI	ACCWGGT	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	377, 442
CviAII	CATG	2 cut(s)	117, 475
CviQI	GTAC	2 cut(s)	377, 442
DdeI	CTNAG	7 cut(s)	122, 195, 525, 578, 777, 881, 891
DpnI	GATC	5 cut(s)	278, 461, 642, 864, 903
DpnII	GATC	5 cut(s)	276, 459, 640, 862, 901
DraIII	CACNNNGTG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	495, 726
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	328
FaeI	CATG	2 cut(s)	120, 478
FatI	CATG	2 cut(s)	116, 474
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	60, 207, 571, 656, 659
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	5 cut(s)	60, 207, 571, 656, 659
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	5 cut(s)	60, 207, 571, 656, 659
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	2 cut(s)	351, 856
Hin1II	CATG	2 cut(s)	120, 478
HindIII	AAGCTT	2 cut(s)	738, 779
HinfI	GANTC	4 cut(s)	704, 801, 852, 926
HpaII	CCGG	2 cut(s)	351, 856
HphI	GGTGA	3 cut(s)	14, 239, 527
Hpy166II	GTNNAC	2 cut(s)	444, 518
Hpy188I	TCNGA	4 cut(s)	190, 424, 542, 892
Hpy188III	TCNNGA	6 cut(s)	296, 475, 831, 847, 856, 866
Hpy8I	GTNNAC	2 cut(s)	444, 518
HpyAV	CCTTC	2 cut(s)	212, 523
HpyCH4V	TGCA	9 cut(s)	62, 287, 320, 326, 392, 484, 595, 658, 809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 389, 567, 746, 953
HpyF3I	CTNAG	7 cut(s)	122, 195, 525, 578, 777, 881, 891
Hsp92II	CATG	2 cut(s)	120, 478
Kpn2I	TCCGGA	1 cut(s)	855
Kzo9I	GATC	5 cut(s)	276, 459, 640, 862, 901
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	4 cut(s)	46, 193, 642, 670
LweI	GCATC	2 cut(s)	194, 307
MabI	ACCWGGT	1 cut(s)	328
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	20, 752
MalI	GATC	5 cut(s)	278, 461, 642, 864, 903
MboI	GATC	5 cut(s)	276, 459, 640, 862, 901
MboII	GAAGA	3 cut(s)	499, 635, 851
MfeI	CAATTG	1 cut(s)	321
MluCI	AATT	6 cut(s)	281, 321, 553, 598, 698, 896
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	38
MroI	TCCGGA	1 cut(s)	855
MseI	TTAA	2 cut(s)	783, 911
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	351, 856
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	2 cut(s)	486, 949
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	5 cut(s)	132, 389, 567, 746, 953
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	5 cut(s)	276, 459, 640, 862, 901
NlaIII	CATG	2 cut(s)	120, 478
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	474
PctI	GAATGC	2 cut(s)	486, 949
PfeI	GAWTC	3 cut(s)	801, 852, 926
PkrI	GCNGC	5 cut(s)	61, 208, 572, 657, 660
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	378, 443
RsaNI	GTAC	2 cut(s)	377, 442
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	783, 911
SatI	GCNGC	5 cut(s)	60, 207, 571, 656, 659
Sau3AI	GATC	5 cut(s)	276, 459, 640, 862, 901
Sau96I	GGNCC	1 cut(s)	464
ScaI	AGTACT	1 cut(s)	378
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	330
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	2 cut(s)	194, 307
SfcI	CTRYAG	1 cut(s)	656
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	604, 812
SmoI	CTYRAG	2 cut(s)	604, 812
Sse9I	AATT	6 cut(s)	281, 321, 553, 598, 698, 896
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	328
TaqI	TCGA	2 cut(s)	295, 646
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	6 cut(s)	281, 321, 553, 598, 698, 896
TatI	WGTACW	2 cut(s)	376, 441
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	3 cut(s)	801, 852, 926
Tru1I	TTAA	2 cut(s)	783, 911
Tru9I	TTAA	2 cut(s)	783, 911
TscAI	CASTG	2 cut(s)	394, 696
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	59, 206, 655, 658
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	163, 246, 420, 939
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	394, 696
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	4 cut(s)	281, 553, 698, 896
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.