Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

319943 .. 323097

Gene Structure 3155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G002700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTTTAGCTTCAACTAGTCACCTCTCTCTCTGTTCTTCACCACCCTTGCCAAGAACGGCTTTAACCAAGCAGACCCCACTTCTGTTTTCTCAAACCAAGCTTCTTTCATCCAAGAATTGGTCATCCCTGAGCACTTCAACCTGTTTTCTAAATACCCAATTGGTAAAGCTGTCAATTTTTGTCGTAAAAGCATCGGAAACTGAGTCTCAAACATCGAAACCAGCAGCAGAAAGTGGAAATGAAGAAGGAGGAGAGGAAGCATTTGAAGAATATGAGGTAGAAGTGGTGCAGCCTTATGGGCTGAAATTTGCCAAGGGTAGAGATGGTGGAACTTACATTGATGCGATTGCAGCTGGTGGATCTGCTGATAAAACTGGCAAGTTCAGTGTTGGGGATAAAGTACTTGCCACCAGTGCAGTTTTCGGGGATGAAATATGGGCTGCTGCTGAATATGGGAGGACAATGTACACCATTCGCCAGAGGGTCGGTCCACTTCTAATGAGAATGCAGAAGAGAAACGGCAAGATAGATAATTCAGGTGAATTAACAGAAAAGGAGATTATCAGAGCTGAAAGGAATTCTGGTGTAGTTAGCAACAAAGTGAGGGAAATCCAAATGCAAAACTACTTGAAGAAAAAGGAACAAAAAGCAAGGAGAGAAAGTGAACTTCGAGAAGGGCTGCAGCTTTACAAGAAAGCCAAATATGAGGAAGCATTGGAGAAATTTGAGTCTGTACTAGGATTAAAACCAGAGTTAGATGAAGCTTCGGTGGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGATACAAGCTGGGCTCTCTGCACTTGAGGATGCCCTGAAAGCTGGCTTTGAAGACTTCAAGAGAATCCGGACTGATCCTGACCTAGCCAATGTAAGAGCATCTGAGGAATTTGATCCTCTATTGAAAAGATTTGACGAATCATTCATCAATGAGAATGCCATCAATGCCATAAAATCTCTATTTGGAATTTTCAACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.58

Weight (kDa)

7.55

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	882
AclWI	GGATC	3 cut(s)	370, 884, 923
AcsI	RAATTY	5 cut(s)	308, 580, 725, 923, 1002
AfaI	GTAC	3 cut(s)	405, 470, 738
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	8 cut(s)	15, 141, 269, 634, 866, 874, 940, 1009
AhlI	ACTAGT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	370, 884, 923
Aor13HI	TCCGGA	1 cut(s)	882
ApeKI	GCWGC	7 cut(s)	227, 292, 353, 443, 446, 682, 685
ApoI	RAATTY	5 cut(s)	308, 580, 725, 923, 1002
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	14, 33, 554
AvaII	GGWCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	7 cut(s)	239, 304, 365, 430, 433, 669, 697
BccI	CCATC	2 cut(s)	320, 983
BceAI	ACGGC	2 cut(s)	75, 538
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	3 cut(s)	18, 740, 899
BfmI	CTRYAG	1 cut(s)	683
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	7 cut(s)	228, 293, 354, 444, 447, 683, 686
BlsI	GCNGC	7 cut(s)	229, 294, 355, 445, 448, 684, 687
BmcAI	AGTACT	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmsI	GCATC	4 cut(s)	203, 334, 835, 923
BpiI	GAAGAC	1 cut(s)	873
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	860
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	882
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	382, 414
BseAI	TCCGGA	1 cut(s)	882
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	4 cut(s)	110, 125, 436, 850
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	122, 195, 909
BseNI	ACTGG	2 cut(s)	382, 414
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	7 cut(s)	239, 304, 365, 430, 433, 669, 697
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	3 cut(s)	311, 438, 819
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	883
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	2 cut(s)	513, 976
Bsp1286I	GDGCHC	2 cut(s)	137, 831
Bsp13I	TCCGGA	1 cut(s)	882
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	362, 889, 928
BspCNI	CTCAG	3 cut(s)	123, 196, 910
BspEI	TCCGGA	1 cut(s)	882
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	3 cut(s)	370, 884, 923
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	382, 414
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	3 cut(s)	362, 889, 928
BssT1I	CCWWGG	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	859
BstDEI	CTNAG	4 cut(s)	131, 204, 804, 918
BstF5I	GGATG	4 cut(s)	110, 125, 436, 850
BstKTI	GATC	3 cut(s)	365, 892, 931
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	362, 889, 928
BstMWI	GCNNNNNNNGC	6 cut(s)	301, 353, 416, 773, 854, 980
BstSFI	CTRYAG	1 cut(s)	683
BstV1I	GCAGC	7 cut(s)	239, 304, 365, 430, 433, 669, 697
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BtsCI	GGATG	4 cut(s)	110, 125, 436, 850
BtsIMutI	CAGTG	2 cut(s)	394, 421
Cac8I	GCNNGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	404, 469, 737
CviQI	GTAC	3 cut(s)	404, 469, 737
DdeI	CTNAG	4 cut(s)	131, 204, 804, 918
DpnI	GATC	3 cut(s)	364, 891, 930
DpnII	GATC	3 cut(s)	362, 889, 928
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	315
FaiI	YATR	6 cut(s)	276, 300, 439, 456, 708, 986
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
Fnu4HI	GCNGC	7 cut(s)	228, 293, 354, 444, 447, 683, 686
FokI	GGATG	4 cut(s)	97, 112, 443, 857
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	7 cut(s)	228, 293, 354, 444, 447, 683, 686
FspBI	CTAG	3 cut(s)	18, 740, 899
GluI	GCNGC	7 cut(s)	228, 293, 354, 444, 447, 683, 686
GsaI	CCCAGC	1 cut(s)	828
HapII	CCGG	1 cut(s)	883
HindIII	AAGCTT	3 cut(s)	101, 765, 806
HinfI	GANTC	4 cut(s)	206, 731, 879, 953
HpaII	CCGG	1 cut(s)	883
HphI	GGTGA	3 cut(s)	14, 33, 554
Hpy166II	GTNNAC	3 cut(s)	471, 494, 668
Hpy188I	TCNGA	4 cut(s)	199, 569, 816, 919
Hpy188III	TCNNGA	4 cut(s)	674, 874, 883, 893
Hpy8I	GTNNAC	3 cut(s)	471, 494, 668
HpyAV	CCTTC	2 cut(s)	242, 671
HpyCH4V	TGCA	7 cut(s)	292, 353, 419, 511, 622, 685, 836
HpyF10VI	GCNNNNNNNGC	6 cut(s)	301, 353, 416, 773, 854, 980
HpyF3I	CTNAG	4 cut(s)	131, 204, 804, 918
Kpn2I	TCCGGA	1 cut(s)	882
Kzo9I	GATC	3 cut(s)	362, 889, 928
Lsp1109I	GCAGC	7 cut(s)	239, 304, 365, 430, 433, 669, 697
LweI	GCATC	4 cut(s)	203, 334, 835, 923
MaeI	CTAG	3 cut(s)	18, 740, 899
MaeIII	GTNAC	2 cut(s)	20, 779
MalI	GATC	3 cut(s)	364, 891, 930
MboI	GATC	3 cut(s)	362, 889, 928
MboII	GAAGA	6 cut(s)	30, 257, 281, 526, 646, 878
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	137, 831
MlyI	GAGTC	2 cut(s)	215, 740
MroI	TCCGGA	1 cut(s)	882
MseI	TTAA	4 cut(s)	65, 548, 746, 810
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	883
MunI	CAATTG	1 cut(s)	161
Mva1269I	GAATGC	2 cut(s)	513, 976
MwoI	GCNNNNNNNGC	6 cut(s)	301, 353, 416, 773, 854, 980
NdeII	GATC	3 cut(s)	362, 889, 928
NmuCI	GTSAC	1 cut(s)	20
PctI	GAATGC	2 cut(s)	513, 976
PfeI	GAWTC	2 cut(s)	879, 953
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	7 cut(s)	229, 294, 355, 445, 448, 684, 687
PleI	GAGTC	2 cut(s)	214, 739
PpsI	GAGTC	2 cut(s)	214, 739
PspFI	CCCAGC	1 cut(s)	824
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	3 cut(s)	405, 470, 738
RsaNI	GTAC	3 cut(s)	404, 469, 737
SaqAI	TTAA	4 cut(s)	65, 548, 746, 810
SatI	GCNGC	7 cut(s)	228, 293, 354, 444, 447, 683, 686
Sau3AI	GATC	3 cut(s)	362, 889, 928
Sau96I	GGNCC	1 cut(s)	491
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	2 cut(s)	215, 740
SduI	GDGCHC	2 cut(s)	137, 831
SfaNI	GCATC	4 cut(s)	203, 334, 835, 923
SfcI	CTRYAG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SpeI	ACTAGT	1 cut(s)	17
SspMI	CTAG	3 cut(s)	18, 740, 899
StyI	CCWWGG	1 cut(s)	315
TaqI	TCGA	2 cut(s)	218, 673
TaqII	GACCGA	1 cut(s)	479
TatI	WGTACW	3 cut(s)	403, 468, 736
TfiI	GAWTC	2 cut(s)	879, 953
Tru1I	TTAA	4 cut(s)	65, 548, 746, 810
Tru9I	TTAA	4 cut(s)	65, 548, 746, 810
TscAI	CASTG	2 cut(s)	394, 421
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	7 cut(s)	227, 292, 353, 443, 446, 682, 685
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	99, 258, 447, 777, 949
TspRI	CASTG	2 cut(s)	394, 421
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	5 cut(s)	308, 580, 725, 923, 1002
XspI	CTAG	3 cut(s)	18, 740, 899
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.