Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Reverse (-)

88062300 .. 88064279

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG573400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCTTTAGCTCCAACCAGTCACCTATCTCTCTATACTTCACCACCATTGCCAAGAGCTGCTCTAACCAAGCACAACCCTCTTGTGTTTTCTCAAACCAACAAGAACTGGTCATGTCTCAGCACTTCTAGCTGTTTCCTCAATACCCAACTGGTAAAGCTATCCATTTTCATTGTAAGAGCATCAGAAACTAAGTCTCCAACTGCTGAAAGTGAAGGAGGAGGAGATGAACCATATGAGGAGTATGAGGTAGAGATTATACAGCCTTATGGGATCAAATTTGCAAAGGGTCGAGATGGTGGAACTTACATTGATGCAATTGCACCTGGTGGATTTGCTGAAAAGACCGGAAAGTTCGCTGTTGGGGATAAAGTACTTGCCACCAGTGCAGTTTTCGGGGATGAAATATGGCCAGCTTCTGAATATGGGAGGACAATGTACACCATTCGCCAAAGGATCGGTCCATTACTCATGAGAATGCAGAAGAGATACGGAAAGTTAGACACTTCAGGTGAACTAACTGAGAAGGAGATTATCAGAGCTGAAAGGAATTCTGGTATAGTTAGCGGCAAACTGAGGGAAATCCAAATGCAAAATTACTTGAGGAAAAAGGAACAGAAAGCACAGAGAGAAAACGATCTTCGAGTAGGGCTGCAGCTTTACAAGAGTGGCAAATATGAGGAAGCACTGGAAAAATTTGAGTCTGTATTAGGTTCAAAGCCAGACACATTTGAAGCTTCAGTCGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGGTAAAAGCTGGAATCTCTGCACTTGAGGAAGCCCTGAAATCTGGATTTGAAGACTTCAAGAGAATCCGGAGTGATCCTGACCTCGCCAATCTAAGAACATCTGAGGAATTTGATCCTCTATTAAAAAGATTTGATGAATCATTTATCAATGAGAATGCCATCAATGCCATCAAATCTCTATTTGGCTTCAACAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.66

Weight (kDa)

8.46

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	852
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	4 cut(s)	281, 464, 854, 893
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	4 cut(s)	278, 550, 695, 893
AcuI	CTGAAG	2 cut(s)	492, 723
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	375, 440
AgsI	TTSAA	5 cut(s)	717, 734, 836, 844, 976
AjnI	CCWGG	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	122, 201
AlwI	GGATC	4 cut(s)	281, 464, 854, 893
AlwNI	CAGNNNCTG	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	852
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	59, 652, 655
ApoI	RAATTY	4 cut(s)	278, 550, 695, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	14, 33, 524
AvaII	GGWCC	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	46, 639, 667
BccI	CCATC	3 cut(s)	290, 953, 962
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	122, 201
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	653
BisI	GCNGC	4 cut(s)	60, 568, 653, 656
BlsI	GCNGC	4 cut(s)	61, 569, 654, 657
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	191, 304
BpiI	GAAGAC	1 cut(s)	843
BpuEI	CTTGAG	2 cut(s)	622, 830
BsaWI	WCCGGW	2 cut(s)	347, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	5 cut(s)	18, 113, 156, 384, 693
Bse3DI	GCAATG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	4 cut(s)	133, 513, 566, 879
BseNI	ACTGG	5 cut(s)	18, 113, 156, 384, 693
BseRI	GAGGAG	3 cut(s)	234, 237, 254
BseXI	GCAGC	3 cut(s)	46, 639, 667
BsgI	GTGCAG	2 cut(s)	408, 789
BshFI	GGCC	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	348, 853
BsmAI	GTCTC	2 cut(s)	122, 201
BsmI	GAATGC	2 cut(s)	483, 946
BsnI	GGCC	1 cut(s)	412
Bsp13I	TCCGGA	1 cut(s)	852
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	273, 456, 637, 859, 898
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	4 cut(s)	132, 514, 567, 880
BspEI	TCCGGA	1 cut(s)	852
BspHI	TCATGA	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	657
BspPI	GGATC	4 cut(s)	281, 464, 854, 893
BsrDI	GCAATG	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	5 cut(s)	18, 113, 156, 384, 693
BssMI	GATC	5 cut(s)	273, 456, 637, 859, 898
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	7 cut(s)	119, 192, 522, 575, 774, 878, 888
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	5 cut(s)	276, 459, 640, 862, 901
BstMAI	GTCTC	2 cut(s)	122, 201
BstMBI	GATC	5 cut(s)	273, 456, 637, 859, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 386, 743, 950
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	653
BstV1I	GCAGC	3 cut(s)	46, 639, 667
BstV2I	GAAGAC	1 cut(s)	843
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	391, 686
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	461
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	374, 439
CviAII	CATG	2 cut(s)	114, 472
CviQI	GTAC	2 cut(s)	374, 439
DdeI	CTNAG	7 cut(s)	119, 192, 522, 575, 774, 878, 888
DpnI	GATC	5 cut(s)	275, 458, 639, 861, 900
DpnII	GATC	5 cut(s)	273, 456, 637, 859, 898
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	492, 723
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	117, 475
FatI	CATG	2 cut(s)	113, 471
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	60, 568, 653, 656
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	4 cut(s)	60, 568, 653, 656
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	60, 568, 653, 656
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	348, 853
Hin1II	CATG	2 cut(s)	117, 475
HindIII	AAGCTT	2 cut(s)	735, 776
HinfI	GANTC	4 cut(s)	701, 798, 849, 923
HpaII	CCGG	2 cut(s)	348, 853
HphI	GGTGA	3 cut(s)	14, 33, 524
Hpy166II	GTNNAC	2 cut(s)	441, 515
Hpy188I	TCNGA	4 cut(s)	187, 421, 539, 889
Hpy188III	TCNNGA	6 cut(s)	293, 472, 828, 844, 853, 863
Hpy8I	GTNNAC	2 cut(s)	441, 515
HpyAV	CCTTC	2 cut(s)	209, 520
HpyCH4V	TGCA	8 cut(s)	284, 317, 323, 389, 481, 592, 655, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 386, 743, 950
HpyF3I	CTNAG	7 cut(s)	119, 192, 522, 575, 774, 878, 888
Hsp92II	CATG	2 cut(s)	117, 475
Kpn2I	TCCGGA	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	273, 456, 637, 859, 898
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	3 cut(s)	46, 639, 667
LweI	GCATC	2 cut(s)	191, 304
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	20, 749
MalI	GATC	5 cut(s)	275, 458, 639, 861, 900
MboI	GATC	5 cut(s)	273, 456, 637, 859, 898
MboII	GAAGA	3 cut(s)	496, 632, 848
MfeI	CAATTG	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	6 cut(s)	278, 318, 550, 595, 695, 893
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	2 cut(s)	38, 224
Mox20I	TGGCCA	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	2 cut(s)	780, 908
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	412
MspI	CCGG	2 cut(s)	348, 853
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	483, 946
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	129, 386, 743, 950
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	5 cut(s)	273, 456, 637, 859, 898
NlaIII	CATG	2 cut(s)	117, 475
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	471
PctI	GAATGC	2 cut(s)	483, 946
PfeI	GAWTC	3 cut(s)	798, 849, 923
PkrI	GCNGC	4 cut(s)	61, 569, 654, 657
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	657
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	375, 440
RsaNI	GTAC	2 cut(s)	374, 439
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	780, 908
SatI	GCNGC	4 cut(s)	60, 568, 653, 656
Sau3AI	GATC	5 cut(s)	273, 456, 637, 859, 898
Sau96I	GGNCC	1 cut(s)	461
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	327
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	191, 304
SfcI	CTRYAG	1 cut(s)	653
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	601, 809
SmoI	CTYRAG	2 cut(s)	601, 809
Sse9I	AATT	6 cut(s)	278, 318, 550, 595, 695, 893
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	325
TaqI	TCGA	2 cut(s)	292, 643
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	6 cut(s)	278, 318, 550, 595, 695, 893
TatI	WGTACW	2 cut(s)	373, 438
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	3 cut(s)	798, 849, 923
Tru1I	TTAA	2 cut(s)	780, 908
Tru9I	TTAA	2 cut(s)	780, 908
TscAI	CASTG	2 cut(s)	391, 693
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	59, 652, 655
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	160, 243, 417, 936
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	2 cut(s)	391, 693
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	4 cut(s)	278, 550, 695, 893
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.