Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Forward (+)

262682 .. 264747

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTGTCATGGACTCGTTGTAATCCAAAACCTTTTAGACCAAACAAATGGAATTTCCACCCCAAACTTTCCCAGCAACTCCAACATCTTCCTCTTCTTCTTCTCCTTCACCGTAATCTCGGCTAAAACAAGACCAAACATAATGTCTTTAGCTCCAACAAGTCACATGTCTCTCTGTTCTGCACCGCCATTGCCTAGAACTTCTTTGACCAAGCAGCAGAACAACCACCCACTTGTGTTTTCTCCGACCAAGAATTTCTCAGGTCTGAGCACTTCAAGCAGTTTCCTCAGCAGCCGTTCGGTTAGACTGTCTATTTTCTTAGTAAAAACATCGGAAACTGAGTCGAAACCAGCAGAGAGTGGAAGTGAAGGAGGAGAAGGAGAAGGAAAACCAGAAGCATATGAAGAGTATGAGGTGGAAGTGGTGCAGCCTTACGGGCTGAAATTCTCCAAAGGCCGAGATGGCGGAACTTACATTGATGCCATTGCGCCCGGTGGATCTGCTGACAAGACTGGCAAGTTCACTGTTGGGGATAAAGTTATTGCCACAAGTGCAGTTTTTGGGGATGAAATATGGCCTGCTGCCGAGTATGGGAGGACAATGTACACTATTCGCCAGAGGATCGGTCCACTTCTCATGCGAATGCAGAAGAGATACGGCAATTTAGATACTTCAGGTGAATTAACGGAAAAGGAGATTATCAGAGCTGAGAGGAATTCTGGTGTAATTAGCGGAAAATTGAGGGATATCCAAATGCAAAACTATCTGAGGAAAAAGGAACAAAAAGCGCAGAGAGAAAGTGACCTTCGACAAGGCCTCCAGCTGTACAAGGGTGGCAAATACGAGGAAGCATTGGAGAAATTTGAATCTGTACTAGGATCAAAACCAGAGTTAGATGAAGCTTCCATTGCAAGTTACAATGTTGCTTGTTGTTATTCTAAGCTTAATCAGAGATACAAGCTGGGATCTCTGCACTTGAGGACGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.37

Weight (kDa)

8.97

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	185, 465, 732
AclWI	GGATC	4 cut(s)	505, 629, 886, 973
AcsI	RAATTY	5 cut(s)	51, 253, 443, 715, 860
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	983
AfaI	GTAC	3 cut(s)	605, 827, 873
AfiI	CCNNNNNNNGG	1 cut(s)	591
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	276, 866
AluBI	AGCT	6 cut(s)	152, 707, 823, 902, 943, 961
AluI	AGCT	6 cut(s)	152, 707, 823, 902, 943, 961
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	4 cut(s)	505, 629, 886, 973
AoxI	GGCC	3 cut(s)	454, 575, 814
ApeKI	GCWGC	4 cut(s)	214, 291, 427, 581
ApoI	RAATTY	5 cut(s)	51, 253, 443, 715, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspLEI	GCGC	2 cut(s)	490, 790
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	100, 689
AvaII	GGWCC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	226, 303, 439, 568
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	2 cut(s)	279, 673
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	195, 875
BglI	GCCNNNNNGGC	2 cut(s)	436, 462
BisI	GCNGC	4 cut(s)	215, 292, 428, 582
BlsI	GCNGC	4 cut(s)	216, 293, 429, 583
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	983
BsaXI	ACNNNNNCTCC	2 cut(s)	801, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	3 cut(s)	188, 483, 906
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	3 cut(s)	188, 483, 906
BseMII	CTCAG	6 cut(s)	257, 273, 301, 330, 699, 758
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	226, 303, 439, 568
BseYI	CCCAGC	2 cut(s)	71, 961
BsgI	GTGCAG	4 cut(s)	165, 446, 573, 956
BshFI	GGCC	3 cut(s)	456, 577, 816
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	3 cut(s)	456, 577, 816
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	2 cut(s)	603, 825
Bsp143I	GATC	4 cut(s)	497, 621, 878, 965
BspACI	CCGC	3 cut(s)	185, 465, 732
BspANI	GGCC	3 cut(s)	456, 577, 816
BspCNI	CTCAG	6 cut(s)	258, 272, 300, 331, 700, 759
BspPI	GGATC	4 cut(s)	505, 629, 886, 973
BsrDI	GCAATG	3 cut(s)	188, 483, 906
BsrGI	TGTACA	2 cut(s)	603, 825
BsrI	ACTGG	1 cut(s)	517
BssMI	GATC	4 cut(s)	497, 621, 878, 965
BssNI	GRCGYC	1 cut(s)	983
Bst4CI	ACNGT	3 cut(s)	112, 309, 526
Bst6I	CTCTTC	3 cut(s)	98, 399, 644
BstACI	GRCGYC	1 cut(s)	983
BstAUI	TGTACA	2 cut(s)	603, 825
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	8 cut(s)	259, 266, 287, 319, 339, 708, 767, 939
BstF5I	GGATG	1 cut(s)	571
BstHHI	GCGC	2 cut(s)	490, 790
BstKTI	GATC	4 cut(s)	500, 624, 881, 968
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	4 cut(s)	497, 621, 878, 965
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 436, 462, 551, 908
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	4 cut(s)	226, 303, 439, 568
BstX2I	RGATCY	2 cut(s)	497, 965
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	2 cut(s)	497, 965
BsuRI	GGCC	3 cut(s)	456, 577, 816
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	579
CfoI	GCGC	2 cut(s)	490, 790
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	604, 826, 872
CviAII	CATG	3 cut(s)	8, 166, 637
CviQI	GTAC	3 cut(s)	604, 826, 872
DdeI	CTNAG	8 cut(s)	259, 266, 287, 319, 339, 708, 767, 939
DpnI	GATC	4 cut(s)	499, 623, 880, 967
DpnII	GATC	4 cut(s)	497, 621, 878, 965
Eam1104I	CTCTTC	3 cut(s)	98, 399, 644
EarI	CTCTTC	3 cut(s)	98, 399, 644
EciI	GGCGGA	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	748
FaeI	CATG	3 cut(s)	11, 169, 640
FaiI	YATR	9 cut(s)	9, 140, 167, 400, 402, 411, 574, 591, 638
FatI	CATG	3 cut(s)	7, 165, 636
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	215, 292, 428, 582
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	215, 292, 428, 582
FspBI	CTAG	2 cut(s)	195, 875
GlaI	GCGC	2 cut(s)	489, 789
GluI	GCNGC	4 cut(s)	215, 292, 428, 582
GsaI	CCCAGC	2 cut(s)	75, 965
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	456, 577, 816
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	2 cut(s)	490, 790
Hin1I	GRCGYC	1 cut(s)	983
Hin1II	CATG	3 cut(s)	11, 169, 640
Hin6I	GCGC	2 cut(s)	488, 788
HinP1I	GCGC	2 cut(s)	488, 788
HindIII	AAGCTT	2 cut(s)	900, 941
HinfI	GANTC	3 cut(s)	12, 341, 866
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	2 cut(s)	100, 689
Hpy166II	GTNNAC	3 cut(s)	522, 606, 629
Hpy188I	TCNGA	6 cut(s)	246, 267, 334, 704, 768, 951
Hpy8I	GTNNAC	3 cut(s)	522, 606, 629
HpyAV	CCTTC	5 cut(s)	115, 362, 371, 377, 815
HpyCH4III	ACNGT	3 cut(s)	112, 309, 526
HpyCH4V	TGCA	7 cut(s)	182, 427, 554, 646, 757, 911, 973
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 436, 462, 551, 908
HpyF3I	CTNAG	8 cut(s)	259, 266, 287, 319, 339, 708, 767, 939
Hsp92I	GRCGYC	1 cut(s)	983
Hsp92II	CATG	3 cut(s)	11, 169, 640
HspAI	GCGC	2 cut(s)	488, 788
Kzo9I	GATC	4 cut(s)	497, 621, 878, 965
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	226, 303, 439, 568
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	195, 875
MaeIII	GTNAC	3 cut(s)	161, 800, 914
MalI	GATC	4 cut(s)	499, 623, 880, 967
MboI	GATC	4 cut(s)	497, 621, 878, 965
MboII	GAAGA	6 cut(s)	79, 85, 88, 91, 416, 661
MflI	RGATCY	2 cut(s)	497, 965
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	9 cut(s)	51, 253, 443, 661, 680, 715, 726, 737, 860
MlyI	GAGTC	2 cut(s)	6, 350
MmeI	TCCRAC	3 cut(s)	105, 179, 269
MseI	TTAA	2 cut(s)	683, 945
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	276, 436, 462, 551, 908
NciI	CCSGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	497, 621, 878, 965
NlaIII	CATG	3 cut(s)	11, 169, 640
NmeAIII	GCCGAG	3 cut(s)	98, 482, 610
NmuCI	GTSAC	2 cut(s)	161, 800
NspI	RCATGY	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	816
PciI	ACATGT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	866
PkrI	GCNGC	4 cut(s)	216, 293, 429, 583
PleI	GAGTC	2 cut(s)	6, 349
PpsI	GAGTC	2 cut(s)	6, 349
PscI	ACATGT	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	71, 961
PspPI	GGNCC	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	497, 965
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	3 cut(s)	605, 827, 873
RsaNI	GTAC	3 cut(s)	604, 826, 872
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	683, 945
SatI	GCNGC	4 cut(s)	215, 292, 428, 582
Sau3AI	GATC	4 cut(s)	497, 621, 878, 965
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	2 cut(s)	6, 350
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	976
SmoI	CTYRAG	1 cut(s)	976
Sse9I	AATT	9 cut(s)	51, 253, 443, 661, 680, 715, 726, 737, 860
SseBI	AGGCCT	1 cut(s)	816
SsiI	CCGC	3 cut(s)	185, 465, 732
SspMI	CTAG	2 cut(s)	195, 875
StuI	AGGCCT	1 cut(s)	816
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	3 cut(s)	112, 309, 526
TaqI	TCGA	2 cut(s)	344, 808
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	9 cut(s)	51, 253, 443, 661, 680, 715, 726, 737, 860
TatI	WGTACW	3 cut(s)	603, 825, 871
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	2 cut(s)	683, 945
Tru9I	TTAA	2 cut(s)	683, 945
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	161, 800
TseI	GCWGC	4 cut(s)	214, 291, 427, 581
Tsp45I	GTSAC	2 cut(s)	161, 800
TspDTI	ATGAA	3 cut(s)	417, 582, 912
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	5 cut(s)	51, 253, 443, 715, 860
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	2 cut(s)	195, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.