Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012499

Physical Location & Seq

Genomic Coordinates Reverse (-)

67026191 .. 67029808

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0486700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTTGTGTCTGACAAGGATTTCAGTCTGGGCATGACGATCTTCTTCATCTTAAGAGGTGTCGACTTGATTTTTGCAAAAAATTTCTTTAGCATCGACGCGATCTTTTCTCTCTCTTCGTTCTCGGGAGTTTACGATTGTCAAATTGGGTTTATCATCAACAAGGAGAACGAAGGCGATTTTTGGAATTGCGTTGATGAAAGTAGGAGAGCTGTAGCTCAGGTGTATGTGATTAGTGGGACTGCTGCTCAGTTGTACTTCACCAAGGAAGATTCGACTCCAAAGCGGGTTATCAGAAGTTCTTTATGGGACAGAGAGCCAAGACATCAGAGGATCACGGGACGGGGAAGTTTTCAGGGAAACCATCAGTCTGGGCAGCCTATTAATAAGGGGAGGCTTAAAAGGGTCAAAGATCGGTTCAGAGAGATGACACAGTGGTTTGAACAAGTAATCAGATATGCAGTTGACATGCCACAGGATATTCATGGAAATGATGTAAAGCTAAGTGAGTACAGTGGCAAGGTAAGGACACATAATTGGAGATGGGTGTTTTCAGACTTGGCTGCAATACATGAATCATCTTCAATAGATGTCAAGAGTGAGTACATACCATCATGGAGGCTGATATGCACACTGCTGGATTTTACTGCTCTTCAAACTGAAGTTAACCTACATAAAGAAGGGACGCCAAAAATTGTGGATATAGGACTTCCATTGAGACCATCAGTCGTCCAGTACCATGAACATTCCGGTCCTTTCAAGAATCCACGAGCGTGCTACCTTGTCATTACGATGAGATTTGGAGTCTACGAATTTGACTGGTTACATGACATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009575 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009941 GO:0009987 GO:0010206 GO:0010207 GO:0015979 GO:0016020 GO:0016043 GO:0019538 GO:0019684 GO:0019898 GO:0022607 GO:0030091 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0035448 GO:0042170 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

32.37

Weight (kDa)

7.73

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55480
fragaria_vesca	FvH4_3g45781 FvH4_3g45781
malus_domestica	MD03G1003100.v1.1 MD11G1002900.v1.1
prunus_persica	Prupe.6G002700_v2.0.a1 Prupe.6G002700_v2.0.a1
pyrus_communis	pycom03g00310 pycom11g00270
rosa_chinensis	RchiOBHm_Chr5g0083861
rosa_laevigata	RLG00000037059
rosa_multiflora	Rmu_sc0001287.1_g000042
rosa_roxburghii	Rroxscaffold_1G00000730
rosa_rugosa	Rorug05G0486700 Rorug05G0486800
rosa_samantha	Rh5AG539800 Rh5CG586800 Rh5DG573400
rosa_wichuraiana	Rw5G050190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	63, 807
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	82, 812
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	686
AfaI	GTAC	4 cut(s)	257, 512, 605, 737
AflII	CTTAAG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	4 cut(s)	443, 585, 656, 760
AhdI	GACNNNNNGTC	1 cut(s)	725
AleI	CACNNNNGTG	1 cut(s)	772
AluBI	AGCT	3 cut(s)	212, 218, 502
AluI	AGCT	3 cut(s)	212, 218, 502
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	245, 376, 563
ApoI	RAATTY	2 cut(s)	82, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AseI	ATTAAT	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	752
BarI	GAAGNNNNNNTAC	2 cut(s)	654, 686
BauI	CACGAG	1 cut(s)	768
BbvI	GCAGC	3 cut(s)	232, 388, 550
BccI	CCATC	4 cut(s)	372, 537, 619, 730
BcoDI	GTCTC	1 cut(s)	712
BfmI	CTRYAG	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	52
BisI	GCNGC	3 cut(s)	246, 377, 564
BlsI	GCNGC	3 cut(s)	247, 378, 565
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	725
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	752
BmsI	GCATC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	686
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	733, 824
BseDI	CCNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	233, 263
BseNI	ACTGG	2 cut(s)	733, 824
BseXI	GCAGC	3 cut(s)	232, 388, 550
Bsh1236I	CGCG	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	4 cut(s)	253, 323, 354, 697
BsmAI	GTCTC	1 cut(s)	712
BsmFI	GGGAC	4 cut(s)	253, 323, 354, 697
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	39, 102, 333, 412
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	232, 262
BspFNI	CGCG	1 cut(s)	101
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	733, 824
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	39, 102, 333, 412
BssNI	GRCGYC	1 cut(s)	686
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	435, 515
Bst6I	CTCTTC	2 cut(s)	121, 657
BstACI	GRCGYC	1 cut(s)	686
BstAFI	CTTAAG	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	3 cut(s)	219, 249, 503
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	4 cut(s)	42, 105, 336, 415
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	4 cut(s)	39, 102, 333, 412
BstNSI	RCATGY	2 cut(s)	472, 835
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	232, 388, 550
BstXI	CCANNNNNNTGG	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	3 cut(s)	440, 520, 632
Cac8I	GCNNGC	1 cut(s)	775
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	2 cut(s)	107, 694
Csp6I	GTAC	4 cut(s)	256, 511, 604, 736
CspCI	CAANNNNNGTGG	2 cut(s)	678, 713
CviAII	CATG	8 cut(s)	34, 469, 485, 572, 615, 740, 827, 832
CviJI	RGCY	8 cut(s)	212, 218, 319, 379, 397, 502, 563, 622
CviKI_1	RGCY	8 cut(s)	212, 218, 319, 379, 397, 502, 563, 622
CviQI	GTAC	4 cut(s)	256, 511, 604, 736
DdeI	CTNAG	3 cut(s)	219, 249, 503
DpnI	GATC	4 cut(s)	41, 104, 335, 414
DpnII	GATC	4 cut(s)	39, 102, 333, 412
DriI	GACNNNNNGTC	1 cut(s)	725
Eam1104I	CTCTTC	2 cut(s)	121, 657
Eam1105I	GACNNNNNGTC	1 cut(s)	725
EarI	CTCTTC	2 cut(s)	121, 657
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	8 cut(s)	37, 472, 488, 575, 618, 743, 830, 835
FaqI	GGGAC	4 cut(s)	253, 323, 354, 697
FatI	CATG	8 cut(s)	33, 468, 484, 571, 614, 739, 826, 831
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	63, 807
Fnu4HI	GCNGC	3 cut(s)	246, 377, 564
Fsp4HI	GCNGC	3 cut(s)	246, 377, 564
GluI	GCNGC	3 cut(s)	246, 377, 564
HapII	CCGG	1 cut(s)	750
HgaI	GACGC	2 cut(s)	107, 694
Hin1I	GRCGYC	1 cut(s)	686
Hin1II	CATG	8 cut(s)	37, 472, 488, 575, 618, 743, 830, 835
HincII	GTYRAC	3 cut(s)	64, 466, 667
HindII	GTYRAC	3 cut(s)	64, 466, 667
HinfI	GANTC	5 cut(s)	272, 277, 575, 763, 804
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	750
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	5 cut(s)	64, 133, 466, 667, 808
Hpy188I	TCNGA	6 cut(s)	13, 296, 330, 422, 455, 556
Hpy188III	TCNNGA	3 cut(s)	126, 595, 760
Hpy8I	GTNNAC	5 cut(s)	64, 133, 466, 667, 808
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	167, 674
HpyCH4III	ACNGT	2 cut(s)	435, 515
HpyCH4V	TGCA	4 cut(s)	77, 461, 566, 630
HpyF3I	CTNAG	3 cut(s)	219, 249, 503
Hsp92I	GRCGYC	1 cut(s)	686
Hsp92II	CATG	8 cut(s)	37, 472, 488, 575, 618, 743, 830, 835
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	4 cut(s)	39, 102, 333, 412
LguI	GCTCTTC	1 cut(s)	657
LpnPI	CCDG	9 cut(s)	14, 206, 341, 357, 461, 623, 746, 763, 805
Lsp1109I	GCAGC	3 cut(s)	232, 388, 550
LweI	GCATC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	822
MalI	GATC	4 cut(s)	41, 104, 335, 414
MboI	GATC	4 cut(s)	39, 102, 333, 412
MboII	GAAGA	6 cut(s)	34, 37, 108, 281, 573, 644
MluCI	AATT	6 cut(s)	82, 144, 187, 535, 693, 812
MlyI	GAGTC	2 cut(s)	271, 813
MnlI	CCTC	4 cut(s)	50, 324, 387, 612
MseI	TTAA	4 cut(s)	53, 384, 399, 666
MslI	CAYNNNNRTG	3 cut(s)	489, 772, 791
MspCI	CTTAAG	1 cut(s)	52
MspI	CCGG	1 cut(s)	750
MvnI	CGCG	1 cut(s)	101
NdeII	GATC	4 cut(s)	39, 102, 333, 412
NlaIII	CATG	8 cut(s)	37, 472, 488, 575, 618, 743, 830, 835
NspI	RCATGY	2 cut(s)	472, 835
OliI	CACNNNNGTG	1 cut(s)	772
PciI	ACATGT	1 cut(s)	831
PciSI	GCTCTTC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	272, 575, 763
PkrI	GCNGC	3 cut(s)	247, 378, 565
PleI	GAGTC	2 cut(s)	271, 812
PpsI	GAGTC	2 cut(s)	271, 812
PscI	ACATGT	1 cut(s)	831
PshBI	ATTAAT	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	752
RsaI	GTAC	4 cut(s)	257, 512, 605, 737
RsaNI	GTAC	4 cut(s)	256, 511, 604, 736
RseI	CAYNNNNRTG	3 cut(s)	489, 772, 791
SalI	GTCGAC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	4 cut(s)	53, 384, 399, 666
SatI	GCNGC	3 cut(s)	246, 377, 564
Sau3AI	GATC	4 cut(s)	39, 102, 333, 412
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	2 cut(s)	271, 813
SetI	ASST	8 cut(s)	61, 214, 220, 225, 504, 525, 672, 783
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	3 cut(s)	489, 772, 791
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	6 cut(s)	82, 144, 187, 535, 693, 812
SsiI	CCGC	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	435, 515
TaqI	TCGA	3 cut(s)	63, 96, 275
TasI	AATT	6 cut(s)	82, 144, 187, 535, 693, 812
TatI	WGTACW	3 cut(s)	255, 510, 603
TfiI	GAWTC	3 cut(s)	272, 575, 763
Tru1I	TTAA	4 cut(s)	53, 384, 399, 666
Tru9I	TTAA	4 cut(s)	53, 384, 399, 666
TscAI	CASTG	3 cut(s)	440, 520, 639
TseI	GCWGC	3 cut(s)	245, 376, 563
TspDTI	ATGAA	5 cut(s)	37, 213, 473, 588, 756
TspRI	CASTG	3 cut(s)	440, 520, 639
Vha464I	CTTAAG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	752
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	2 cut(s)	82, 812
XceI	RCATGY	2 cut(s)	472, 835
XmiI	GTMKAC	2 cut(s)	63, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.