AT1G55900

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20903053 .. 20905853
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55900.1

Sequence Viewer

Length: 1131 bp
ATGGCGTCTATTGTTCTTCGATCTCGCCTGTTGCCAAGATTAGCAAAGCTCAGATCTCGTAATCTGAGATGTTTCTCTGCGGAAGCATCTTCGACGAATTCTACATCTAGGTATTCGGGAGTCACCTCTACCCAGTCGATGTTTTCTGATTTTCCACCGCCAAATCAGCCGCCACCTCCTCCTCCTCCTCAAGTGGAAGCTGCTGCCGCGGCTGCGACGGGAAAGGAGAGGAAAGGTCTTAAGTATCTTGGTTACGCACTCCTCTGGGCACTCACTGGTGCTACCGCTGCTACTGGTTACGCAAGTTTTGCTTACACGATAGATGAAGTGAATGAAAAGACTAAGGCGTTCCGAGAATCAGCTACGAAGACACCAGTTATTAAATCTTCTGGCATTGATGTGATTGATAAATATCAGACTAAGTTGTACTCTGCTGCAATGACAGGTTCTGCTAGAGCCATTGATAAGTATTTAGAGCTTAGGGAAATTGTGGAGGAACAAGTGAAAGGCTTCACGGAACCTCTCTCGGAAAAGCTTCTTCCGGATCTGCACCCCGCAGAACAGCATGTCTTCACTCTAGTTCTTGATTTAAATGAGACACTGCTTTACACTGACTGGAAGCGGGAAAGAGGGTGGAGGACATTCAAAAGACCAGGTGTCGATGCATTCTTGGAGCATCTTGGGAAATTCTATGAGATTGTCGTGTATTCTGACCAGATGGAGATGTATGTACTCCCGGTCTGTGAGAAATTAGACCCAAATGGCTACATACGTTATAAGCTAGCAAGAGGCGCTACTAAATATGAAAATGGAAAGCACTATAGGGATCTGTCAAAGCTGAACAGAGATCCGAAGAAGATTCTGTTTGTTAGCGCAAATGCCTTTGAATCAACCCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAAGCTGATGACACAGCCCTAGTTGACCTGATACCCTTCCTTGAATATGTTGCACGTAACAGTCCAGCAGACATCAGACCGGTTCTGGCCTCTTTTGAGAGAAAAGATATTGCCAAAGAGTTCATTGACAGGTCCATAGAGTATCAAAAGCGAAAGCAAGGACAACTGGGACAAGGTCGATTCTGGAGGCGTTAA

Protein Analysis

376

Amino Acids

42.64

Weight (kDa)

9.28

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 192 - 337 1.7e-38 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AccII CGCG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 541
AciI CCGC 8 cut(s) 80, 158, 170, 207, 209, 285, 555, 622
AclWI GGATC 3 cut(s) 552, 834, 842
AcsI RAATTY 2 cut(s) 97, 686
AcuI CTGAAG 1 cut(s) 881
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 428, 732
AflII CTTAAG 1 cut(s) 239
AgeI ACCGGT 1 cut(s) 1015
AgsI TTSAA 3 cut(s) 646, 887, 980
AhdI GACNNNNNGTC 1 cut(s) 656
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 8 cut(s) 49, 200, 362, 478, 535, 781, 838, 941
AluI AGCT 8 cut(s) 49, 200, 362, 478, 535, 781, 838, 941
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 3 cut(s) 552, 834, 842
AlwNI CAGNNNCTG 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 1 cut(s) 1023
ApeKI GCWGC 5 cut(s) 200, 203, 212, 287, 434
ApoI RAATTY 2 cut(s) 97, 686
AsiGI ACCGGT 1 cut(s) 1015
Asp700I GAANNNNTTC 2 cut(s) 509, 534
AspLEI GCGC 2 cut(s) 794, 875
AspS9I GGNCC 1 cut(s) 1068
AsuC2I CCSGG 1 cut(s) 737
AsuHPI GGTGA 1 cut(s) 115
AsuNHI GCTAGC 1 cut(s) 781
AvaII GGWCC 1 cut(s) 1068
BaeGI GKGCMC 1 cut(s) 271
BbsI GAAGAC 2 cut(s) 374, 562
BbvI GCAGC 5 cut(s) 187, 190, 199, 274, 421
BccI CCATC 1 cut(s) 712
BciT130I CCWGG 1 cut(s) 654
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 6 cut(s) 108, 453, 578, 782, 935, 956
BfmI CTRYAG 1 cut(s) 820
BfoI RGCGCY 1 cut(s) 795
BfrI CTTAAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 53
BisI GCNGC 8 cut(s) 170, 201, 204, 207, 210, 213, 288, 435
BlsI GCNGC 8 cut(s) 171, 202, 205, 208, 211, 214, 289, 436
Bme1390I CCNGG 2 cut(s) 654, 737
Bme18I GGWCC 1 cut(s) 1068
BmeRI GACNNNNNGTC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 1068
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 2 cut(s) 654, 737
BmrI ACTGGG 2 cut(s) 127, 1112
BmsI GCATC 3 cut(s) 95, 652, 685
BmtI GCTAGC 1 cut(s) 785
BmuI ACTGGG 2 cut(s) 127, 1112
BpiI GAAGAC 2 cut(s) 374, 562
Bpu10I CCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 737
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 2 cut(s) 541, 1015
Bse118I RCCGGY 1 cut(s) 1015
Bse1I ACTGG 6 cut(s) 133, 280, 298, 374, 620, 1107
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 411
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 56, 64
BseNI ACTGG 6 cut(s) 133, 280, 298, 374, 620, 1107
BseRI GAGGAG 5 cut(s) 168, 171, 174, 177, 251
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 5 cut(s) 187, 190, 199, 274, 421
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 1025
BshTI ACCGGT 1 cut(s) 1015
BsiSI CCGG 3 cut(s) 542, 737, 1016
BslFI GGGAC 1 cut(s) 1119
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 1119
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 1 cut(s) 1025
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 5 cut(s) 20, 53, 544, 826, 847
BspACI CCGC 8 cut(s) 80, 158, 170, 207, 209, 285, 555, 622
BspANI GGCC 1 cut(s) 1025
BspCNI CTCAG 2 cut(s) 57, 63
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 519
BspOI GCTAGC 1 cut(s) 785
BspPI GGATC 3 cut(s) 552, 834, 842
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 1015
BsrI ACTGG 6 cut(s) 133, 280, 298, 374, 620, 1107
BssAI RCCGGY 1 cut(s) 1015
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 5 cut(s) 20, 53, 544, 826, 847
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 998
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 992
BstC8I GCNNGC 2 cut(s) 783, 914
BstDEI CTNAG 5 cut(s) 50, 65, 342, 420, 479
BstDSI CCRYGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 2 cut(s) 794, 875
BstKTI GATC 5 cut(s) 23, 56, 547, 829, 850
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 5 cut(s) 20, 53, 544, 826, 847
BstMWI GCNNNNNNNGC 8 cut(s) 166, 206, 209, 212, 287, 308, 791, 922
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 652, 735
BstSFI CTRYAG 1 cut(s) 820
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 5 cut(s) 187, 190, 199, 274, 421
BstV2I GAAGAC 2 cut(s) 374, 562
BstX2I RGATCY 4 cut(s) 53, 544, 826, 847
BstYI RGATCY 4 cut(s) 53, 544, 826, 847
BsuRI GGCC 1 cut(s) 1025
BtgI CCRYGG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 3 cut(s) 273, 599, 609
Cac8I GCNNGC 2 cut(s) 783, 914
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 2 cut(s) 794, 875
Cfr10I RCCGGY 1 cut(s) 1015
Cfr13I GGNCC 1 cut(s) 1068
Cfr42I CCGCGG 1 cut(s) 210
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 2 cut(s) 427, 731
CspAI ACCGGT 1 cut(s) 1015
CviAII CATG 1 cut(s) 566
CviQI GTAC 2 cut(s) 427, 731
DdeI CTNAG 5 cut(s) 50, 65, 342, 420, 479
DpnI GATC 5 cut(s) 22, 55, 546, 828, 849
DpnII GATC 5 cut(s) 20, 53, 544, 826, 847
DraI TTTAAA 1 cut(s) 591
DriI GACNNNNNGTC 1 cut(s) 656
Eam1105I GACNNNNNGTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 1068
Eco57I CTGAAG 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 652
EcoT22I ATGCAT 1 cut(s) 667
FaeI CATG 1 cut(s) 569
FaiI YATR 9 cut(s) 567, 693, 729, 770, 777, 804, 822, 984, 1073
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 1119
FatI CATG 1 cut(s) 565
FauI CCCGC 2 cut(s) 562, 615
Fnu4HI GCNGC 8 cut(s) 170, 201, 204, 207, 210, 213, 288, 435
Fsp4HI GCNGC 8 cut(s) 170, 201, 204, 207, 210, 213, 288, 435
FspBI CTAG 6 cut(s) 108, 453, 578, 782, 935, 956
GlaI GCGC 2 cut(s) 793, 874
GluI GCNGC 8 cut(s) 170, 201, 204, 207, 210, 213, 288, 435
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 1 cut(s) 1025
HapII CCGG 3 cut(s) 542, 737, 1016
HhaI GCGC 2 cut(s) 794, 875
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 569
Hin6I GCGC 2 cut(s) 792, 873
HinP1I GCGC 2 cut(s) 792, 873
HincII GTYRAC 1 cut(s) 961
HindII GTYRAC 1 cut(s) 961
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 5 cut(s) 120, 356, 859, 887, 1116
HpaII CCGG 3 cut(s) 542, 737, 1016
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 961
Hpy188I TCNGA 9 cut(s) 53, 66, 148, 353, 417, 529, 712, 852, 1013
Hpy188III TCNNGA 4 cut(s) 117, 542, 584, 1120
Hpy8I GTNNAC 1 cut(s) 961
Hpy99I CGWCG 2 cut(s) 97, 220
HpyAV CCTTC 2 cut(s) 905, 982
HpyCH4III ACNGT 1 cut(s) 998
HpyCH4IV ACGT 2 cut(s) 772, 991
HpyCH4V TGCA 4 cut(s) 437, 550, 665, 989
HpyF10VI GCNNNNNNNGC 8 cut(s) 166, 206, 209, 212, 287, 308, 791, 922
HpyF3I CTNAG 5 cut(s) 50, 65, 342, 420, 479
HpySE526I ACGT 2 cut(s) 772, 991
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 569
HspAI GCGC 2 cut(s) 792, 873
Kpn2I TCCGGA 1 cut(s) 541
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 5 cut(s) 20, 53, 544, 826, 847
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 5 cut(s) 187, 190, 199, 274, 421
LweI GCATC 3 cut(s) 95, 652, 685
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 6 cut(s) 108, 453, 578, 782, 935, 956
MaeII ACGT 2 cut(s) 772, 991
MaeIII GTNAC 4 cut(s) 121, 251, 296, 992
MalI GATC 5 cut(s) 22, 55, 546, 828, 849
MboI GATC 5 cut(s) 20, 53, 544, 826, 847
MboII GAAGA 8 cut(s) 8, 81, 378, 379, 530, 562, 865, 868
MflI RGATCY 4 cut(s) 53, 544, 826, 847
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 4 cut(s) 97, 486, 686, 749
MlyI GAGTC 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 667
MroI TCCGGA 1 cut(s) 541
MroXI GAANNNNTTC 2 cut(s) 509, 534
MseI TTAA 4 cut(s) 240, 381, 590, 1129
MslI CAYNNNNRTG 1 cut(s) 398
MspA1I CMGCKG 2 cut(s) 209, 287
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 542, 737, 1016
MspR9I CCNGG 2 cut(s) 654, 737
Mva1269I GAATGC 1 cut(s) 665
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 8 cut(s) 166, 206, 209, 212, 287, 308, 791, 922
NciI CCSGG 1 cut(s) 737
NdeII GATC 5 cut(s) 20, 53, 544, 826, 847
NheI GCTAGC 1 cut(s) 781
NlaIII CATG 1 cut(s) 569
NlaIV GGNNCC 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 1 cut(s) 569
PctI GAATGC 1 cut(s) 665
PdmI GAANNNNTTC 2 cut(s) 509, 534
PfeI GAWTC 4 cut(s) 356, 859, 887, 1116
PflFI GACNNNGTC 1 cut(s) 1110
PinAI ACCGGT 1 cut(s) 1015
PkrI GCNGC 8 cut(s) 171, 202, 205, 208, 211, 214, 289, 436
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 992
PsiI TTATAA 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 4 cut(s) 53, 544, 826, 847
PsyI GACNNNGTC 1 cut(s) 1110
RsaI GTAC 2 cut(s) 428, 732
RsaNI GTAC 2 cut(s) 427, 731
RseI CAYNNNNRTG 1 cut(s) 398
SacII CCGCGG 1 cut(s) 210
SaqAI TTAA 4 cut(s) 240, 381, 590, 1129
SatI GCNGC 8 cut(s) 170, 201, 204, 207, 210, 213, 288, 435
Sau3AI GATC 5 cut(s) 20, 53, 544, 826, 847
Sau96I GGNCC 1 cut(s) 1068
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 654, 737
SduI GDGCHC 1 cut(s) 271
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 3 cut(s) 95, 652, 685
SfcI CTRYAG 1 cut(s) 820
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SinI GGWCC 1 cut(s) 1068
SmiI ATTTAAAT 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 189, 239
SmoI CTYRAG 2 cut(s) 189, 239
Sse9I AATT 4 cut(s) 97, 486, 686, 749
SsiI CCGC 8 cut(s) 80, 158, 170, 207, 209, 285, 555, 622
SspMI CTAG 6 cut(s) 108, 453, 578, 782, 935, 956
StyD4I CCNGG 2 cut(s) 652, 735
SwaI ATTTAAAT 1 cut(s) 591
TaaI ACNGT 1 cut(s) 998
TaiI ACGT 2 cut(s) 775, 994
TaqI TCGA 5 cut(s) 19, 92, 137, 660, 1114
TasI AATT 4 cut(s) 97, 486, 686, 749
TatI WGTACW 2 cut(s) 426, 730
TauI GCSGC 3 cut(s) 172, 209, 212
TfiI GAWTC 4 cut(s) 356, 859, 887, 1116
Tru1I TTAA 4 cut(s) 240, 381, 590, 1129
Tru9I TTAA 4 cut(s) 240, 381, 590, 1129
TscAI CASTG 3 cut(s) 280, 606, 616
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 5 cut(s) 200, 203, 212, 287, 434
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 339, 348, 819, 1048
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 280, 606, 616
Tth111I GACNNNGTC 1 cut(s) 1110
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 1068
XapI RAATTY 2 cut(s) 97, 686
XceI RCATGY 1 cut(s) 569
XmnI GAANNNNTTC 2 cut(s) 509, 534
XspI CTAG 6 cut(s) 108, 453, 578, 782, 935, 956
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.