Rroxscaffold_1G00026740

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
33691924 .. 33696837
4914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026740.1

Sequence Viewer

Length: 1164 bp
ATGTCTTCAACACTACTTCGCTCCCGTTTAGCCTCTCTCGTAGCGAAGCGCGGTCGCCGTCTGTTGAGCTCCGACGTCGCTTCAAACCCTCCTAAGGACCCATTCGTTGCCGCCGAAACCCTCGCTTCCAATCGCACAGCTCCTCCCCCACCACCGCCAACCGCGAGCGCGTCAACTAGAAAGCCCTGGAGCTTTCTCAAATACTCCCTCATTGGCGCTCTCACCGGCGCCACCGCCTCTGTTGCTTATGTCTCCTATGCTTACTCGATAGATGAAATAGCTGAAAAGACAAAGGCTCTGCGAGAAGCGCGTGCAAGTATCGAAATTCCAGATGATGCGTCTACTCTTGATAAATTCAAAACTATGCTCTACTCTTCTGCAATTATAGTGCCTGCTAAAGCAGCTGAAGCTTACCTTGATGCTAGGAGGGCAATTGAAGAACAAGTTCGAGGTTATACTGAACCATATGCGGAAAAGCTTCTTCCAGATTTGCTTCCCATGGAGAGAAATGTTTATACACTTGTTCTGGATCTACAGGAGACATTACTTTACTCTTATTGGACGGATGTTTCTCTTTGGCATATGAAGAGGGAAAAGGGCTGGCAGACGATCAAAAGACCTGGAGTTGATGCTTTCTTAGAGCATCTTGCTCAGTATTATGAAATCATCGTATTTTCGGACTATTCAAATATGTATGTAGATCCTGTAATGGAGAGATTGGACCCAAAACATTGTGTAAGATTCAGGCTAGGAAAGGCTGCCACCAAGTATCAAGATGGAGTGCATTATAGGGACCTTTCAAAGCTAAATAGAGATCCAAGAAAGATCATATATCTGAGTGCCCATGCACGAGAAAATAGCCTACAGCCTGAAAATGGTGCCGTAATAAAGCCATATAAGTCTGAGCTGGATGATACAGCTCTTGTAGATTTCATCCCATTTCTTGAATTTGTCGCCCGTAACCCTCCAGCAGATATCAGACAAGTATTAGCATCGTATGAAGGACATGAAATTCCAGCTGAGTTCATTAGGCGTACTAAGGAGCATCAGAGGTCACTTATAATGTCACATGTTGGTGCAAATTCTTACAAAATAAAATTGAAATCACATTGCAGGAAAATGCAAGAACAGAAGCAGCATGGTCCTCGACTCTGGAGGCGTTGA

Protein Analysis

387

Amino Acids

44.15

Weight (kDa)

9.35

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 172 - 320 2.5e-36 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1061
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 2 cut(s) 227, 878
AccI GTMKAC 1 cut(s) 341
AccII CGCG 4 cut(s) 51, 164, 170, 310
AciI CCGC 6 cut(s) 51, 111, 155, 162, 234, 470
AclWI GGATC 3 cut(s) 537, 695, 809
AcsI RAATTY 5 cut(s) 324, 353, 947, 1011, 1081
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 2 cut(s) 75, 228
AfaI GTAC 1 cut(s) 1036
AfiI CCNNNNNNNGG 2 cut(s) 94, 875
AflIII ACRYGT 1 cut(s) 1069
AgsI TTSAA 8 cut(s) 9, 84, 358, 437, 687, 801, 947, 1102
AjnI CCWGG 2 cut(s) 185, 619
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 256, 533
AlwI GGATC 3 cut(s) 537, 695, 809
ApeKI GCWGC 3 cut(s) 401, 758, 1135
ApoI RAATTY 5 cut(s) 324, 353, 947, 1011, 1081
Asp700I GAANNNNTTC 2 cut(s) 444, 477
AspLEI GCGC 5 cut(s) 51, 170, 218, 230, 310
AspS9I GGNCC 4 cut(s) 97, 721, 793, 1142
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 4 cut(s) 97, 721, 793, 1142
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 844
BanI GGYRCC 2 cut(s) 227, 878
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 413, 745, 1147
BccI CCATC 1 cut(s) 770
BceAI ACGGC 2 cut(s) 42, 866
BcgI CGANNNNNNTGC 2 cut(s) 1127, 1161
BciT130I CCWGG 2 cut(s) 187, 621
BcoDI GTCTC 2 cut(s) 256, 533
BfaI CTAG 3 cut(s) 177, 423, 749
BfmI CTRYAG 2 cut(s) 533, 863
BfoI RGCGCY 2 cut(s) 219, 231
BisI GCNGC 4 cut(s) 111, 402, 759, 1136
BlsI GCNGC 4 cut(s) 112, 403, 760, 1137
Bme1390I CCNGG 2 cut(s) 187, 621
Bme18I GGWCC 4 cut(s) 97, 721, 793, 1142
BmgT120I GGNCC 4 cut(s) 97, 721, 793, 1142
BmiI GGNNCC 5 cut(s) 99, 229, 723, 794, 880
BmrFI CCNGG 2 cut(s) 187, 621
BmsI GCATC 6 cut(s) 325, 409, 619, 652, 1001, 1054
BpmI CTGGAG 3 cut(s) 208, 642, 951
BsaHI GRCGYC 2 cut(s) 75, 228
BsaJI CCNNGG 2 cut(s) 185, 498
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 875
Bse118I RCCGGY 1 cut(s) 224
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 1108
BseBI CCWGG 2 cut(s) 187, 621
BseDI CCNNGG 2 cut(s) 185, 498
BseGI GGATG 3 cut(s) 571, 916, 933
BseLI CCNNNNNNNGG 2 cut(s) 94, 875
BseMI GCAATG 1 cut(s) 1108
BseMII CTCAG 4 cut(s) 665, 827, 894, 1011
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 3 cut(s) 413, 745, 1147
Bsh1236I CGCG 4 cut(s) 51, 164, 170, 310
Bsh1285I CGRYCG 1 cut(s) 55
BshNI GGYRCC 2 cut(s) 227, 878
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 2 cut(s) 94, 875
BsmAI GTCTC 2 cut(s) 256, 533
BsmFI GGGAC 1 cut(s) 806
Bsp1286I GDGCHC 2 cut(s) 71, 844
Bsp143I GATC 5 cut(s) 529, 609, 700, 814, 825
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 6 cut(s) 51, 111, 155, 162, 234, 470
BspCNI CTCAG 4 cut(s) 664, 828, 895, 1012
BspFNI CGCG 4 cut(s) 51, 164, 170, 310
BspLI GGNNCC 5 cut(s) 99, 229, 723, 794, 880
BspPI GGATC 3 cut(s) 537, 695, 809
BspT107I GGYRCC 2 cut(s) 227, 878
BsrDI GCAATG 1 cut(s) 1108
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 185, 498
BssMI GATC 5 cut(s) 529, 609, 700, 814, 825
BssNI GRCGYC 2 cut(s) 75, 228
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 2 cut(s) 187, 621
Bst6I CTCTTC 2 cut(s) 379, 581
BstACI GRCGYC 2 cut(s) 75, 228
BstC8I GCNNGC 4 cut(s) 166, 312, 393, 602
BstDEI CTNAG 7 cut(s) 93, 637, 651, 836, 903, 1020, 1038
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 3 cut(s) 571, 916, 933
BstFNI CGCG 4 cut(s) 51, 164, 170, 310
BstH2I RGCGCY 2 cut(s) 219, 231
BstHHI GCGC 5 cut(s) 51, 170, 218, 230, 310
BstKTI GATC 5 cut(s) 532, 612, 703, 817, 828
BstMAI GTCTC 2 cut(s) 256, 533
BstMBI GATC 5 cut(s) 529, 609, 700, 814, 825
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 5 cut(s) 242, 307, 401, 407, 428
BstNI CCWGG 2 cut(s) 187, 621
BstNSI RCATGY 1 cut(s) 1073
BstSCI CCNGG 2 cut(s) 185, 619
BstSFI CTRYAG 2 cut(s) 533, 863
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 4 cut(s) 51, 164, 170, 310
BstV1I GCAGC 3 cut(s) 413, 745, 1147
BstX2I RGATCY 3 cut(s) 529, 700, 814
BstYI RGATCY 3 cut(s) 529, 700, 814
Bsu36I CCTNAGG 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 3 cut(s) 571, 916, 933
Cac8I GCNNGC 4 cut(s) 166, 312, 393, 602
CfoI GCGC 5 cut(s) 51, 170, 218, 230, 310
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 97, 721, 793, 1142
CseI GACGC 2 cut(s) 159, 327
Csp6I GTAC 1 cut(s) 1035
CviAII CATG 5 cut(s) 499, 845, 1007, 1070, 1139
CviQI GTAC 1 cut(s) 1035
DdeI CTNAG 7 cut(s) 93, 637, 651, 836, 903, 1020, 1038
DinI GGCGCC 1 cut(s) 229
DpnI GATC 5 cut(s) 531, 611, 702, 816, 827
DpnII GATC 5 cut(s) 529, 609, 700, 814, 825
Eam1104I CTCTTC 2 cut(s) 379, 581
EarI CTCTTC 2 cut(s) 379, 581
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 4 cut(s) 97, 721, 793, 1142
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 426
Eco81I CCTNAGG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 2 cut(s) 97, 793
EcoRII CCWGG 2 cut(s) 185, 619
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 5 cut(s) 502, 848, 1010, 1073, 1142
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 806
FatI CATG 5 cut(s) 498, 844, 1006, 1069, 1138
FauNDI CATATG 2 cut(s) 466, 582
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 4 cut(s) 111, 402, 759, 1136
FokI GGATG 3 cut(s) 578, 920, 923
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 111, 402, 759, 1136
FspBI CTAG 3 cut(s) 177, 423, 749
GlaI GCGC 5 cut(s) 50, 169, 217, 229, 309
GluI GCNGC 4 cut(s) 111, 402, 759, 1136
GsuI CTGGAG 3 cut(s) 208, 642, 951
HaeII RGCGCY 2 cut(s) 219, 231
HapII CCGG 1 cut(s) 225
HgaI GACGC 2 cut(s) 159, 327
HhaI GCGC 5 cut(s) 51, 170, 218, 230, 310
Hin1I GRCGYC 2 cut(s) 75, 228
Hin1II CATG 5 cut(s) 502, 848, 1010, 1073, 1142
Hin6I GCGC 5 cut(s) 49, 168, 216, 228, 308
HinP1I GCGC 5 cut(s) 49, 168, 216, 228, 308
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 2 cut(s) 408, 476
HinfI GANTC 2 cut(s) 741, 1149
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 174, 342
Hpy188I TCNGA 6 cut(s) 73, 679, 837, 904, 980, 1050
Hpy188III TCNNGA 7 cut(s) 329, 347, 485, 527, 773, 944, 1153
Hpy8I GTNNAC 2 cut(s) 174, 342
Hpy99I CGWCG 2 cut(s) 77, 80
HpyAV CCTTC 1 cut(s) 995
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 7 cut(s) 314, 380, 784, 848, 1079, 1113, 1123
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 307, 401, 407, 428
HpyF3I CTNAG 7 cut(s) 93, 637, 651, 836, 903, 1020, 1038
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 75, 228
Hsp92II CATG 5 cut(s) 502, 848, 1010, 1073, 1142
HspAI GCGC 5 cut(s) 49, 168, 216, 228, 308
KasI GGCGCC 1 cut(s) 227
Kzo9I GATC 5 cut(s) 529, 609, 700, 814, 825
LmnI GCTCC 5 cut(s) 26, 74, 145, 189, 1042
Lsp1109I GCAGC 3 cut(s) 413, 745, 1147
LweI GCATC 6 cut(s) 325, 409, 619, 652, 1001, 1054
MaeI CTAG 3 cut(s) 177, 423, 749
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 959, 1053, 1065
MalI GATC 5 cut(s) 531, 611, 702, 816, 827
MboI GATC 5 cut(s) 529, 609, 700, 814, 825
MboII GAAGA 4 cut(s) 366, 449, 473, 598
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 3 cut(s) 529, 700, 814
MhlI GDGCHC 2 cut(s) 71, 844
MluCI AATT 8 cut(s) 324, 353, 381, 432, 947, 1011, 1081, 1097
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 1143
MmeI TCCRAC 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 444, 477
MslI CAYNNNNRTG 1 cut(s) 1074
MspA1I CMGCKG 2 cut(s) 404, 1019
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 187, 621
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 2 cut(s) 187, 621
MvnI CGCG 4 cut(s) 51, 164, 170, 310
MwoI GCNNNNNNNGC 5 cut(s) 242, 307, 401, 407, 428
NarI GGCGCC 1 cut(s) 228
NcoI CCATGG 1 cut(s) 498
NdeI CATATG 2 cut(s) 466, 582
NdeII GATC 5 cut(s) 529, 609, 700, 814, 825
NlaIII CATG 5 cut(s) 502, 848, 1010, 1073, 1142
NlaIV GGNNCC 5 cut(s) 99, 229, 723, 794, 880
NmuCI GTSAC 2 cut(s) 1053, 1065
NspI RCATGY 1 cut(s) 1073
PciI ACATGT 1 cut(s) 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 2 cut(s) 444, 477
PfeI GAWTC 1 cut(s) 741
PkrI GCNGC 4 cut(s) 112, 403, 760, 1137
PleI GAGTC 1 cut(s) 1143
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 1143
PpuMI RGGWCCY 2 cut(s) 97, 793
PscI ACATGT 1 cut(s) 1069
PsiI TTATAA 1 cut(s) 1061
Psp124BI GAGCTC 1 cut(s) 71
Psp5II RGGWCCY 2 cut(s) 97, 793
Psp6I CCWGG 2 cut(s) 185, 619
PspGI CCWGG 2 cut(s) 185, 619
PspN4I GGNNCC 5 cut(s) 99, 229, 723, 794, 880
PspPI GGNCC 4 cut(s) 97, 721, 793, 1142
PspPPI RGGWCCY 2 cut(s) 97, 793
PsuI RGATCY 3 cut(s) 529, 700, 814
PvuII CAGCTG 2 cut(s) 404, 1019
RsaI GTAC 1 cut(s) 1036
RsaNI GTAC 1 cut(s) 1035
RseI CAYNNNNRTG 1 cut(s) 1074
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 4 cut(s) 111, 402, 759, 1136
Sau3AI GATC 5 cut(s) 529, 609, 700, 814, 825
Sau96I GGNCC 4 cut(s) 97, 721, 793, 1142
SchI GAGTC 1 cut(s) 1143
ScrFI CCNGG 2 cut(s) 187, 621
SduI GDGCHC 2 cut(s) 71, 844
SfaNI GCATC 6 cut(s) 325, 409, 619, 652, 1001, 1054
SfcI CTRYAG 2 cut(s) 533, 863
SfoI GGCGCC 1 cut(s) 229
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 4 cut(s) 97, 721, 793, 1142
SmiMI CAYNNNNRTG 1 cut(s) 1074
Sse9I AATT 8 cut(s) 324, 353, 381, 432, 947, 1011, 1081, 1097
SsiI CCGC 6 cut(s) 51, 111, 155, 162, 234, 470
SspDI GGCGCC 1 cut(s) 227
SspMI CTAG 3 cut(s) 177, 423, 749
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 185, 619
StyI CCWWGG 1 cut(s) 498
TaiI ACGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 266, 321, 448, 1147
TasI AATT 8 cut(s) 324, 353, 381, 432, 947, 1011, 1081, 1097
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 741
TseFI GTSAC 2 cut(s) 1053, 1065
TseI GCWGC 3 cut(s) 401, 758, 1135
Tsp45I GTSAC 2 cut(s) 1053, 1065
TspDTI ATGAA 7 cut(s) 288, 599, 675, 922, 1014, 1015, 1023
TspGWI ACGGA 1 cut(s) 578
VpaK11BI GGWCC 4 cut(s) 97, 721, 793, 1142
XapI RAATTY 5 cut(s) 324, 353, 947, 1011, 1081
XceI RCATGY 1 cut(s) 1073
XmiI GTMKAC 1 cut(s) 341
XmnI GAANNNNTTC 2 cut(s) 444, 477
XspI CTAG 3 cut(s) 177, 423, 749
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.