RLG00000034907

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
56854490 .. 56859869
5380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034907

Sequence Viewer

Length: 1092 bp
ATGTCTTCAACACTACTTCGCTCCCGTTTAGCCTCTCTCGTATCGAAGCGCGGTCGCCGTCTATTGAGCTCCGACGTCGCTTCGAACCCTCCTAAGGACCCATTCGTTGCCGCCGAAACCCTCGCTTCCAATCGCGCAACTCCTCCACCGCCACCGCCACCGCCAAGCGCCGCCGCTGCGAGCGCGTCAACTAGAAAGCCCTGGAGCTTTCTCAAGTACTCCCTCGTTGGCGCGCTCACCGGCGCCACCGCCTCCGTTGCTTATGTCTCCTATGCTTACTCGATTGATGAAATAGCTGAAAAGACAAAGGCTCTGCGAGAAGCGCATGCAAGTATCGAAATTCCAGATGATGCGTCTACTCTTGACAAATTCAAAACTATGCTCTACTCTTCTGCAATTATAGTGCCTGCTAAAGCAGCTGAAGCTTACCTTGATACTAGGAGGGCAATTGAAGAACAAGTTCGAGGTTATACTGAACCATATGCGGAAAAGCTTCTTCCAGATTTGCAACCCTGGGAGAGAAATGTTTATACACTTGTTCTGGATCTACAGGAGACATTACTTTACTCTTATTGGACGAGGGAAAAGGGCTGGCAGACGATCAAAAGACCTGGAGTTGATGCTTTCTTAGAGCATCTTGCTCAGTATTATGAAATCATTGTATTTTCGGACTATTCAAATATGTATGTAGATCCTGTAATGGAGAGATTGGACCCAAAACATTGTGTAAGATTCAGGCTAGGAAAGGCTGCCACCAAGTATCAAGATGGAGTGCATTATAGGGACCTTTCAAAGCTAAATAGAGATCCAAGAAAGATCATATATCTGAGTGCCCATGCACGAGAAAATAGCCTACAGCCTGAAAATGGTGCCGTAATAAAGCCATATAAGTCTGAGCTGGATGATACAGCTCTTGTAGATTTCATCCCATTTCTTGAATTTGTCGCCCGTAACCCTCCAGCAGATATCAGACAAGTATTAGCATCGTATGAAGGACATGAAATTCCAGCTGAGTTCATTAGGCGTACTAAGGAGCATCAGAGGAAAATGCAAGAACAGAAGCAGCATGGTCCTCGACTCTGGAGGCGTTGA

Protein Analysis

364

Amino Acids

41.27

Weight (kDa)

9.07

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 177 - 317 1.9e-35 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 2 cut(s) 242, 869
AccI GTMKAC 1 cut(s) 356
AccII CGCG 4 cut(s) 51, 135, 185, 233
AciI CCGC 9 cut(s) 51, 111, 149, 155, 161, 171, 174, 249, 485
AclWI GGATC 3 cut(s) 552, 686, 800
AcsI RAATTY 4 cut(s) 339, 368, 938, 1002
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 2 cut(s) 75, 243
AfaI GTAC 2 cut(s) 218, 1027
AfiI CCNNNNNNNGG 2 cut(s) 94, 866
AgsI TTSAA 6 cut(s) 9, 373, 452, 678, 792, 938
AjnI CCWGG 3 cut(s) 200, 512, 610
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 271, 548
AlwI GGATC 3 cut(s) 552, 686, 800
ApeKI GCWGC 4 cut(s) 176, 416, 749, 1063
ApoI RAATTY 4 cut(s) 339, 368, 938, 1002
Asp700I GAANNNNTTC 2 cut(s) 459, 492
AspLEI GCGC 8 cut(s) 51, 137, 170, 185, 233, 235, 245, 325
AspS9I GGNCC 4 cut(s) 97, 712, 784, 1070
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 4 cut(s) 97, 712, 784, 1070
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 835
BanI GGYRCC 2 cut(s) 242, 869
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 4 cut(s) 163, 428, 736, 1075
BccI CCATC 1 cut(s) 761
BceAI ACGGC 2 cut(s) 42, 857
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 3 cut(s) 202, 514, 612
BcoDI GTCTC 2 cut(s) 271, 548
BfaI CTAG 3 cut(s) 192, 438, 740
BfmI CTRYAG 2 cut(s) 548, 854
BfoI RGCGCY 2 cut(s) 171, 246
BisI GCNGC 7 cut(s) 111, 171, 174, 177, 417, 750, 1064
BlsI GCNGC 7 cut(s) 112, 172, 175, 178, 418, 751, 1065
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 202, 514, 612
Bme18I GGWCC 4 cut(s) 97, 712, 784, 1070
BmgT120I GGNCC 4 cut(s) 97, 712, 784, 1070
BmiI GGNNCC 5 cut(s) 99, 244, 714, 785, 871
BmrFI CCNGG 3 cut(s) 202, 514, 612
BmsI GCATC 5 cut(s) 340, 610, 643, 992, 1045
BpmI CTGGAG 3 cut(s) 223, 633, 942
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 197
BsaHI GRCGYC 2 cut(s) 75, 243
BsaJI CCNNGG 3 cut(s) 200, 512, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 866
Bse118I RCCGGY 1 cut(s) 239
Bse21I CCTNAGG 1 cut(s) 93
BseBI CCWGG 3 cut(s) 202, 514, 612
BseDI CCNNGG 3 cut(s) 200, 512, 513
BseGI GGATG 2 cut(s) 907, 924
BseLI CCNNNNNNNGG 2 cut(s) 94, 866
BseMII CTCAG 4 cut(s) 656, 818, 885, 1002
BsePI GCGCGC 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 4 cut(s) 163, 428, 736, 1075
Bsh1236I CGCG 4 cut(s) 51, 135, 185, 233
Bsh1285I CGRYCG 1 cut(s) 55
BshNI GGYRCC 2 cut(s) 242, 869
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 2 cut(s) 94, 866
BsmAI GTCTC 2 cut(s) 271, 548
BsmFI GGGAC 1 cut(s) 797
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 71, 835
Bsp143I GATC 5 cut(s) 544, 600, 691, 805, 816
BspACI CCGC 9 cut(s) 51, 111, 149, 155, 161, 171, 174, 249, 485
BspCNI CTCAG 4 cut(s) 655, 819, 886, 1003
BspFNI CGCG 4 cut(s) 51, 135, 185, 233
BspLI GGNNCC 5 cut(s) 99, 244, 714, 785, 871
BspPI GGATC 3 cut(s) 552, 686, 800
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 242, 869
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 200, 512, 513
BssHII GCGCGC 1 cut(s) 231
BssMI GATC 5 cut(s) 544, 600, 691, 805, 816
BssNI GRCGYC 2 cut(s) 75, 243
BssSI CACGAG 1 cut(s) 840
Bst2BI CACGAG 1 cut(s) 840
Bst2UI CCWGG 3 cut(s) 202, 514, 612
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 2 cut(s) 75, 243
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 5 cut(s) 181, 233, 327, 408, 593
BstDEI CTNAG 7 cut(s) 93, 628, 642, 827, 894, 1011, 1029
BstF5I GGATG 2 cut(s) 907, 924
BstFNI CGCG 4 cut(s) 51, 135, 185, 233
BstH2I RGCGCY 2 cut(s) 171, 246
BstHHI GCGC 8 cut(s) 51, 137, 170, 185, 233, 235, 245, 325
BstKTI GATC 5 cut(s) 547, 603, 694, 808, 819
BstMAI GTCTC 2 cut(s) 271, 548
BstMBI GATC 5 cut(s) 544, 600, 691, 805, 816
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 6 cut(s) 176, 182, 257, 322, 416, 422
BstNI CCWGG 3 cut(s) 202, 514, 612
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 3 cut(s) 200, 512, 610
BstSFI CTRYAG 2 cut(s) 548, 854
BstSLI GKGCMC 1 cut(s) 835
BstUI CGCG 4 cut(s) 51, 135, 185, 233
BstV1I GCAGC 4 cut(s) 163, 428, 736, 1075
BstX2I RGATCY 3 cut(s) 544, 691, 805
BstYI RGATCY 3 cut(s) 544, 691, 805
Bsu36I CCTNAGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 907, 924
Cac8I GCNNGC 5 cut(s) 181, 233, 327, 408, 593
CfoI GCGC 8 cut(s) 51, 137, 170, 185, 233, 235, 245, 325
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 97, 712, 784, 1070
CseI GACGC 2 cut(s) 174, 342
Csp6I GTAC 2 cut(s) 217, 1026
CviAII CATG 4 cut(s) 326, 836, 998, 1067
CviQI GTAC 2 cut(s) 217, 1026
DdeI CTNAG 7 cut(s) 93, 628, 642, 827, 894, 1011, 1029
DinI GGCGCC 1 cut(s) 244
DpnI GATC 5 cut(s) 546, 602, 693, 807, 818
DpnII GATC 5 cut(s) 544, 600, 691, 805, 816
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 967
Eco47I GGWCC 4 cut(s) 97, 712, 784, 1070
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 441
Eco81I CCTNAGG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 2 cut(s) 97, 784
EcoRII CCWGG 3 cut(s) 200, 512, 610
EcoRV GATATC 1 cut(s) 967
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
FaeI CATG 4 cut(s) 329, 839, 1001, 1070
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 797
FatI CATG 4 cut(s) 325, 835, 997, 1066
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 7 cut(s) 111, 171, 174, 177, 417, 750, 1064
FokI GGATG 2 cut(s) 911, 914
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 7 cut(s) 111, 171, 174, 177, 417, 750, 1064
FspBI CTAG 3 cut(s) 192, 438, 740
GlaI GCGC 8 cut(s) 50, 136, 169, 184, 232, 234, 244, 324
GluI GCNGC 7 cut(s) 111, 171, 174, 177, 417, 750, 1064
GsuI CTGGAG 3 cut(s) 223, 633, 942
HaeII RGCGCY 2 cut(s) 171, 246
HapII CCGG 1 cut(s) 240
HgaI GACGC 2 cut(s) 174, 342
HhaI GCGC 8 cut(s) 51, 137, 170, 185, 233, 235, 245, 325
Hin1I GRCGYC 2 cut(s) 75, 243
Hin1II CATG 4 cut(s) 329, 839, 1001, 1070
Hin6I GCGC 8 cut(s) 49, 135, 168, 183, 231, 233, 243, 323
HinP1I GCGC 8 cut(s) 49, 135, 168, 183, 231, 233, 243, 323
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 2 cut(s) 423, 491
HinfI GANTC 2 cut(s) 732, 1077
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 189, 357
Hpy188I TCNGA 6 cut(s) 73, 670, 828, 895, 971, 1041
Hpy188III TCNNGA 7 cut(s) 344, 362, 500, 542, 764, 935, 1081
Hpy8I GTNNAC 2 cut(s) 189, 357
Hpy99I CGWCG 2 cut(s) 77, 80
HpyAV CCTTC 1 cut(s) 986
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 329, 395, 508, 775, 839, 1051
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 182, 257, 322, 416, 422
HpyF3I CTNAG 7 cut(s) 93, 628, 642, 827, 894, 1011, 1029
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 75, 243
Hsp92II CATG 4 cut(s) 329, 839, 1001, 1070
HspAI GCGC 8 cut(s) 49, 135, 168, 183, 231, 233, 243, 323
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 5 cut(s) 544, 600, 691, 805, 816
LmnI GCTCC 4 cut(s) 26, 74, 204, 1033
Lsp1109I GCAGC 4 cut(s) 163, 428, 736, 1075
LweI GCATC 5 cut(s) 340, 610, 643, 992, 1045
MaeI CTAG 3 cut(s) 192, 438, 740
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 950
MalI GATC 5 cut(s) 546, 602, 693, 807, 818
MboI GATC 5 cut(s) 544, 600, 691, 805, 816
MboII GAAGA 3 cut(s) 381, 464, 488
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 3 cut(s) 544, 691, 805
MhlI GDGCHC 2 cut(s) 71, 835
MluCI AATT 6 cut(s) 339, 368, 396, 447, 938, 1002
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 1071
MmeI TCCRAC 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 459, 492
MspA1I CMGCKG 3 cut(s) 176, 419, 1010
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 3 cut(s) 202, 514, 612
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 3 cut(s) 202, 514, 612
MvnI CGCG 4 cut(s) 51, 135, 185, 233
MwoI GCNNNNNNNGC 6 cut(s) 176, 182, 257, 322, 416, 422
NarI GGCGCC 1 cut(s) 243
NdeI CATATG 1 cut(s) 481
NdeII GATC 5 cut(s) 544, 600, 691, 805, 816
NlaIII CATG 4 cut(s) 329, 839, 1001, 1070
NlaIV GGNNCC 5 cut(s) 99, 244, 714, 785, 871
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 329
PasI CCCWGGG 1 cut(s) 513
PauI GCGCGC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 2 cut(s) 459, 492
PfeI GAWTC 1 cut(s) 732
PkrI GCNGC 7 cut(s) 112, 172, 175, 178, 418, 751, 1065
PleI GAGTC 1 cut(s) 1071
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 1071
PpuMI RGGWCCY 2 cut(s) 97, 784
Psp124BI GAGCTC 1 cut(s) 71
Psp5II RGGWCCY 2 cut(s) 97, 784
Psp6I CCWGG 3 cut(s) 200, 512, 610
PspGI CCWGG 3 cut(s) 200, 512, 610
PspN4I GGNNCC 5 cut(s) 99, 244, 714, 785, 871
PspPI GGNCC 4 cut(s) 97, 712, 784, 1070
PspPPI RGGWCCY 2 cut(s) 97, 784
PsuI RGATCY 3 cut(s) 544, 691, 805
PteI GCGCGC 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 419, 1010
RsaI GTAC 2 cut(s) 218, 1027
RsaNI GTAC 2 cut(s) 217, 1026
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 7 cut(s) 111, 171, 174, 177, 417, 750, 1064
Sau3AI GATC 5 cut(s) 544, 600, 691, 805, 816
Sau96I GGNCC 4 cut(s) 97, 712, 784, 1070
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 1071
ScrFI CCNGG 3 cut(s) 202, 514, 612
SduI GDGCHC 2 cut(s) 71, 835
SfaNI GCATC 5 cut(s) 340, 610, 643, 992, 1045
SfcI CTRYAG 2 cut(s) 548, 854
SfoI GGCGCC 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 239
SinI GGWCC 4 cut(s) 97, 712, 784, 1070
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 329
Sse9I AATT 6 cut(s) 339, 368, 396, 447, 938, 1002
SsiI CCGC 9 cut(s) 51, 111, 149, 155, 161, 171, 174, 249, 485
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 3 cut(s) 192, 438, 740
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 200, 512, 610
TaiI ACGT 1 cut(s) 78
TaqI TCGA 6 cut(s) 44, 83, 281, 336, 463, 1075
TasI AATT 6 cut(s) 339, 368, 396, 447, 938, 1002
TatI WGTACW 1 cut(s) 216
TauI GCSGC 3 cut(s) 113, 173, 176
TfiI GAWTC 1 cut(s) 732
TseI GCWGC 4 cut(s) 176, 416, 749, 1063
TspDTI ATGAA 6 cut(s) 303, 666, 913, 1005, 1006, 1014
TspGWI ACGGA 1 cut(s) 244
VpaK11BI GGWCC 4 cut(s) 97, 712, 784, 1070
XapI RAATTY 4 cut(s) 339, 368, 938, 1002
XceI RCATGY 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 356
XmnI GAANNNNTTC 2 cut(s) 459, 492
XspI CTAG 3 cut(s) 192, 438, 740
ZraI GACGTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.