Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010474

Physical Location & Seq

Genomic Coordinates Forward (+)

32541854 .. 32546282

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0283800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3369 bp

ATGTTGAGAAATCCGATCCTATTGTCGATAGTGTTGTTGCTGGTCCAATACTGGTCTATGGCCACGGCAGCACAATCGAACATCAGCACAGACCACTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATGACCCTCAAAATATGATCTTGACCAACTGGTCAACCCCCAGCTCCATTTGCAACTGGGTTGGCATTACTTGTGGTGCACGGCATCTTCGAGTTACTGTCTTGGATCTCTCTTACATGGGTGTCACAGGCTCCATTCCTCCGGAGTTAGGAAACCTATCATTTCTTGTTGAGCTGCGCTTCAGAAATAACAGTTTCCATGGTACCATTCCCCAAGAATTGTCTCGTCTGCGCCACCTGAAGATTCTTAATTTCGGATTCAACAACTTCAAGGGAACCATTCCCTCATGGTTAGGTGCCGTATCCAAACTTCAAATCGTCAATTTGTATGGTAATCAGTTTTCAGGTTTAATACCCCCCAACATCTTCAACTTATCTGCAGTGCAAGAAATTGATCTTAGGTTCAACCAACTGTCAGGTAGCATACCAAGAGAAATTGGGAACTTAACAATGCTGAAGTGGATTGGCCTTGACTATAATAATCTCATCGGAGAAATTCCAAATGAAATTGGCACTTTAGATCAGCTGGAGCAGATAAACGTAATACACAATGCCCTAGAAGGGCATGTTCCTGGGGCTATCTTCAACATGTCTTCTTTGGCTGCATTGTCTCTAACAGGAAACAACTTGAATGGTAGACTTCCAGACAATATATGTCAACATCTTCCTAGTATTCAAGAGTTGTATTTGGGAGACAACCAGTTTGTCGGTCCTCTTCCATCCAAATTATGGCAATGCAAAGAGCTTGCTGTATTATCATGTTGGTCTAATAATTTCAGTGGAAGCATACCCAAAAATATAGGGAACTTGACCCAGATAAAGCATATTGATCTTAGCTTCAGCAACTTGACAGGTACTATACCAGATGAGATTGGTGATCTTCCAAACTTAGACCTTTTGATACTTGAATCAAACAATCTCAATGGTCTCATCCCATCCAGAGTCTTCAATATGTCAACAATACAAACACTCTCATTTGCTCTTAATGATTTATCGGGTAGTCTCCCTGCAAACATCGGACTTGGGGTTCCAAACTTGCAAACCTTTTTTGTATCAGGGAATGAACTTAGTGGACTAATCCCCAACTTCATATCTAATGCTTCCAAGATCACAGTGCTAGACATGGGCTATAACTCATTTTCAGGGTTTATACCTAGCACAGTTTGTGCCTTGGAAAACCTTCAGTCGCTTAACTTGCAGGGAAACCATTTGACCATCGATACTTCTAGTGCAGAAGTAAACTTTCTCTCTTGTTTGGCTACTCTTAGAGATCTGAGGAGATTACACTTGTCCGAAAATCCATTAAACACCAGCCTTCCTGGCTCCAATAGGAATCTCTCTAGAGTAGAAGATATTAATTTAAGCAATAGCAACATGAGGGGTGGCATTCCCAGCGATATTGGCAATATGAGCAGCTTGATAGCCTTACTCCTGGGATACAATCAATTGAGTGGACCAATTCAAACTACAATGGGAAGCCTAAAGAATCTCCAAAGGTTGTTCTTGAGTGATAACCAACTGCAAGGATACATCCCATATGAACTCTGTCTACTAGAAAACCTAGTGTACTTACTGTTGGGTGGTAATCAACTCTCCGGTTCTATACCTTCCTGTTTAGGAAATCTAGCCACATCACTAAGAACTCTATCATTGAACTCGAATTTGTTAACTTCCACTATACCATCTACCTTGTGGAGACTCCAATATATCCTTCATGTAAATTTATCATCCAATTCTCTAATTGGCCTTCTCTCAGAAGATATTGGTAATTTGAAAGTTGTGACAGATATTGATTTATCAAGCAACCATTTATCTGGGATTATACCAGGAAGCATTGGGGGTCTTCAAGATTTGGTCAATCTCTCCTTGGCAAGTAACAATTTAGAAGGCCCTATTCCTACTTCATTTGGCAACATGCTAAGCCTGGAACTCTTGGATTTATCCAAAAACAGTCTATCTGGGGAGATTCCAAAGTCTCTAGAAGCACTCTTGCACCTCAGCCATTTGAATCTGTCTTTCAACAGACTCCGTGGAGAAATTCCAACAGGTGGGCCTTTCAGAAACTTCTCTGCTCAATCATTTGTCTCAGATAGTGCACTTTGTGGCGCACCCCAATTGCATATTGCAGCATGCAAAAACAGAACTAAAGCTAGAGGATCCATCTTGAAGTATGTTCTTCCAGGGATCATGTCAGTGATACTCCTAGTGACCTCTATATCGATGTTGATACTACGCAGAAAAAGGCATGTGGAAGTGGCAAGAGAGACTACCTTGTGTCCTCAACTTCAATGGAGAAGAGTTTCATATCAAGAGCTTCGAACTGTGACTAATGGATTTAATGAAAGCAACTTGCTTGGCAGTGGGGGGTTTGGCTCGGTGTATAAAGGAACACTATCAGATGGGATAAATGTTGCGATAAAGGTTTTCAATTTACAGTTAGAAGGGGCATTCACGAGTTTTGATACCGAATGTGAAATGCTAGGCAGTATTCATCATAGAAACCTTATCAAAATCATCAGTTGCTGCAGCCAAATTGATTTCAAAGCCGTGGTACTGGACTACATGCCTAATGGGAGCCTAGAGAAATGGTTGTATGCTCAAAACTTTTGTTTGAACATCCTGCAGAGGTTGAGTATCATGATAGATGTTGCATCGGCATTGGAATACCTTCATCATGGTACTGAAATACCAATTGTCCATTGCGATTTGAAGCCCAGCAATATATTGTTAGATGCTGATATGGTTGGACATGTTGCTGACTTTGGTATTGCAAGACTCTTGGGTGGAGGAGATTCCATGACTCAAACCATGACGCTAGCCACAATCGGATATATGGCTCCAGAGTATGGAACGGAAGGAATAGTTACCAGAAGAGGAGATGTGTACAGTTTTGGTGTTGTACTTATGGAAACTTTCACAAAAAGGAAGCCGACAGATGAAATGTTTGTTGGGGAAACAGGTTTAACGCAATGGGTTGCAAATTCCTTACTTTCGGGTGCAATAGTTGAAGTTGTGGATGCCAATTTACTTGGGGCAGAGAATGATTTTTCTTTTGTGAGCAAGACAGATTGTTTATCATCCATAATGAGATTAGCTCTAAGCTGTTGTGCAGAGTCACCAGAAGGAAGGATAAATATGCAAGATGCTGTAGTCACACTTAATAAAATCATGATCAAGTTTTTGAAGGACGCTGCAGGAGGTGTGGTTTTACGCCGCCATCTTGCTCAACAGCCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

1122

Amino Acids

122.28

Weight (kDa)

5.91

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 68	9.5e-10	Leucine rich repeat N-terminal domain
LRR_8	PF13855	146 - 205	5.4e-06	Leucine rich repeat
LRR_14	PF23598	175 - 276	2.3e-08	Leucine-rich repeat region
LRR_8	PF13855	218 - 278	2.1e-06	Leucine rich repeat
LRR_8	PF13855	387 - 447	3.6e-08	Leucine rich repeat
LRR_8	PF13855	516 - 574	8.7e-06	Leucine rich repeat
LRR_14	PF23598	616 - 718	1.8e-07	Leucine-rich repeat region
LRR_8	PF13855	661 - 719	2.1e-06	Leucine rich repeat
Pkinase	PF00069	823 - 1093	5.5e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	826 - 1093	7e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55900 AT1G55900
fragaria_vesca	FvH4_3g29430 FvH4_3g29430
malus_domestica	MD03G1185000.v1.1 MD11G1201300.v1.1
prunus_persica	Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1
pyrus_communis	pycom03g13810
rosa_chinensis	RchiOBHm_Chr5g0053871
rosa_laevigata	RLG00000034907
rosa_roxburghii	Rroxscaffold_1G00026740
rosa_rugosa	Rorug05G0283800 Rorug05G0283900
rosa_samantha	Rh5AG353600 Rh5BG365200 Rh5CG390300 Rh5DG380100
rosa_wichuraiana	Rw0G002120 Rw0G009530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	332, 425
AccB7I	CCANNNNNTGG	3 cut(s)	858, 2177, 2975
AccI	GTMKAC	2 cut(s)	766, 1678
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	1 cut(s)	3343
AclWI	GGATC	5 cut(s)	10, 243, 2280, 2293, 2321
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	5 cut(s)	624, 1789, 1849, 2166, 3109
AcuI	CTGAAG	5 cut(s)	295, 389, 605, 952, 1295
AdeI	CACNNNGTG	1 cut(s)	2231
AfaI	GTAC	7 cut(s)	334, 985, 1697, 2682, 2809, 3014, 3030
AfiI	CCNNNNNNNGG	5 cut(s)	278, 690, 858, 2177, 2975
AflIII	ACRYGT	2 cut(s)	717, 2878
AjnI	CCWGG	6 cut(s)	700, 1447, 1560, 1954, 2052, 2308
AjuI	GAANNNNNNNTTGG	4 cut(s)	1824, 1856, 3060, 3092
AloI	GAACNNNNNNTCC	2 cut(s)	1140, 1172
Alw21I	GWGCWC	2 cut(s)	211, 2227
Alw26I	GTCTC	9 cut(s)	357, 744, 816, 1061, 1136, 1819, 2109, 2218, 2387
Alw44I	GTGCAC	2 cut(s)	207, 2223
AlwI	GGATC	5 cut(s)	10, 243, 2280, 2293, 2321
AlwNI	CAGNNNCTG	1 cut(s)	2652
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	5 cut(s)	60, 595, 1873, 2017, 2180
ApaLI	GTGCAC	2 cut(s)	207, 2223
ApeKI	GCWGC	8 cut(s)	68, 304, 731, 1542, 2255, 2652, 2655, 3320
ApoI	RAATTY	5 cut(s)	624, 1789, 1849, 2166, 3109
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AseI	ATTAAT	1 cut(s)	1485
Asp700I	GAANNNNTTC	3 cut(s)	1308, 2428, 2796
Asp718I	GGTACC	1 cut(s)	332
AspLEI	GCGC	3 cut(s)	309, 363, 2237
AspS9I	GGNCC	5 cut(s)	43, 839, 1583, 2018, 2180
AsuHPI	GGTGA	3 cut(s)	118, 1016, 3237
AsuII	TTCGAA	1 cut(s)	2446
AsuNHI	GCTAGC	1 cut(s)	2944
AvaII	GGWCC	3 cut(s)	43, 839, 1583
BaeGI	GKGCMC	2 cut(s)	211, 2227
BalI	TGGCCA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	2285
BanI	GGYRCC	2 cut(s)	332, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
BauI	CACGAG	1 cut(s)	2581
BbsI	GAAGAC	3 cut(s)	714, 1066, 1964
Bbv12I	GWGCWC	2 cut(s)	211, 2227
BbvCI	CCTCAGC	1 cut(s)	2126
BbvI	GCAGC	8 cut(s)	80, 291, 718, 1554, 2267, 2639, 2667, 3307
BccI	CCATC	7 cut(s)	856, 1072, 1352, 1819, 2297, 2522, 3354
BceAI	ACGGC	4 cut(s)	81, 227, 413, 2660
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
BciVI	GTATCC	3 cut(s)	442, 1559, 1649
BclI	TGATCA	1 cut(s)	3300
BcoDI	GTCTC	9 cut(s)	357, 744, 816, 1061, 1136, 1819, 2109, 2218, 2387
BfmI	CTRYAG	5 cut(s)	507, 2653, 2750, 3276, 3321
BfuI	GTATCC	3 cut(s)	442, 1559, 1649
BglI	GCCNNNNNGGC	1 cut(s)	1449
BglII	AGATCT	1 cut(s)	1399
BisI	GCNGC	9 cut(s)	69, 305, 732, 1543, 2256, 2653, 2656, 3321, 3343
BlpI	GCTNAGC	1 cut(s)	2048
BlsI	GCNGC	9 cut(s)	70, 306, 733, 1544, 2257, 2654, 2657, 3322, 3344
Bme1390I	CCNGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
Bme18I	GGWCC	3 cut(s)	43, 839, 1583
BmgT120I	GGNCC	5 cut(s)	43, 839, 1583, 2018, 2180
BmiI	GGNNCC	9 cut(s)	262, 334, 406, 427, 1158, 1453, 2287, 2705, 2967
BmrFI	CCNGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	5 cut(s)	223, 2789, 2851, 3136, 3262
BmtI	GCTAGC	1 cut(s)	2948
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	3 cut(s)	714, 1066, 1964
BplI	GAGNNNNNCTC	2 cut(s)	3208, 3240
BpmI	CTGGAG	2 cut(s)	677, 2952
Bpu10I	CCTNAGC	1 cut(s)	2126
Bpu1102I	GCTNAGC	1 cut(s)	2048
Bpu14I	TTCGAA	1 cut(s)	2446
BpuEI	CTTGAG	1 cut(s)	1654
Bsa29I	ATCGAT	2 cut(s)	1347, 2348
BsaI	GGTCTC	1 cut(s)	1061
BsaJI	CCNNGG	9 cut(s)	63, 328, 701, 1299, 1561, 1995, 2158, 2309, 2676
BsaWI	WCCGGW	2 cut(s)	271, 1724
BsaXI	ACNNNNNCTCC	2 cut(s)	3318, 3348
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 690, 858, 2177, 2975
Bse1I	ACTGG	5 cut(s)	56, 164, 191, 829, 2688
Bse3DI	GCAATG	3 cut(s)	869, 2827, 3104
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
BseCI	ATCGAT	2 cut(s)	1347, 2348
BseDI	CCNNGG	9 cut(s)	63, 328, 701, 1299, 1561, 1995, 2158, 2309, 2676
BseGI	GGATG	8 cut(s)	848, 1059, 1064, 1659, 1856, 2745, 3151, 3206
BseLI	CCNNNNNNNGG	5 cut(s)	278, 690, 858, 2177, 2975
BseMI	GCAATG	3 cut(s)	869, 2827, 3104
BseMII	CTCAG	4 cut(s)	1394, 1896, 2140, 2229
BseNI	ACTGG	5 cut(s)	56, 164, 191, 829, 2688
BseRI	GAGGAG	3 cut(s)	1420, 2931, 3018
BseSI	GKGCMC	2 cut(s)	211, 2227
BseXI	GCAGC	8 cut(s)	80, 291, 718, 1554, 2267, 2639, 2667, 3307
BseYI	CCCAGC	3 cut(s)	170, 1520, 2843
BsgI	GTGCAG	2 cut(s)	1380, 3258
BshFI	GGCC	5 cut(s)	62, 597, 1875, 2019, 2182
BshNI	GGYRCC	2 cut(s)	332, 425
BshVI	ATCGAT	2 cut(s)	1347, 2348
BsiHKAI	GWGCWC	2 cut(s)	211, 2227
BsiSI	CCGG	2 cut(s)	272, 1725
BslI	CCNNNNNNNGG	5 cut(s)	278, 690, 858, 2177, 2975
BsmAI	GTCTC	9 cut(s)	357, 744, 816, 1061, 1136, 1819, 2109, 2218, 2387
BsmI	GAATGC	2 cut(s)	1515, 2576
BsnI	GGCC	5 cut(s)	62, 597, 1875, 2019, 2182
Bso31I	GGTCTC	1 cut(s)	1061
Bsp119I	TTCGAA	1 cut(s)	2446
Bsp1286I	GDGCHC	2 cut(s)	211, 2227
Bsp13I	TCCGGA	1 cut(s)	271
Bsp1407I	TGTACA	1 cut(s)	3012
Bsp1720I	GCTNAGC	1 cut(s)	2048
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	1 cut(s)	3343
BspANI	GGCC	5 cut(s)	62, 597, 1875, 2019, 2182
BspCNI	CTCAG	4 cut(s)	1395, 1895, 2139, 2228
BspDI	ATCGAT	2 cut(s)	1347, 2348
BspEI	TCCGGA	1 cut(s)	271
BspHI	TCATGA	2 cut(s)	2766, 3297
BspLI	GGNNCC	9 cut(s)	262, 334, 406, 427, 1158, 1453, 2287, 2705, 2967
BspMAI	CTGCAG	4 cut(s)	511, 2657, 2754, 3325
BspOI	GCTAGC	1 cut(s)	2948
BspPI	GGATC	5 cut(s)	10, 243, 2280, 2293, 2321
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	2446
BspT107I	GGYRCC	2 cut(s)	332, 425
BspTNI	GGTCTC	1 cut(s)	1061
BsrDI	GCAATG	3 cut(s)	869, 2827, 3104
BsrGI	TGTACA	1 cut(s)	3012
BsrI	ACTGG	5 cut(s)	56, 164, 191, 829, 2688
BssECI	CCNNGG	9 cut(s)	63, 328, 701, 1299, 1561, 1995, 2158, 2309, 2676
BssSI	CACGAG	1 cut(s)	2581
BssT1I	CCWWGG	3 cut(s)	328, 1299, 1995
Bst2BI	CACGAG	1 cut(s)	2581
Bst2UI	CCWGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
Bst6I	CTCTTC	4 cut(s)	108, 849, 2419, 2995
BstAUI	TGTACA	1 cut(s)	3012
BstBI	TTCGAA	1 cut(s)	2446
BstC8I	GCNNGC	3 cut(s)	876, 2260, 2946
BstDSI	CCRYGG	4 cut(s)	63, 328, 2158, 2676
BstF5I	GGATG	8 cut(s)	848, 1059, 1064, 1659, 1856, 2745, 3151, 3206
BstHHI	GCGC	3 cut(s)	309, 363, 2237
BstMAI	GTCTC	9 cut(s)	357, 744, 816, 1061, 1136, 1819, 2109, 2218, 2387
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 107, 180, 1324, 1449, 1521, 1530, 1539
BstNI	CCWGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
BstNSI	RCATGY	7 cut(s)	698, 721, 2047, 2262, 2378, 2695, 2882
BstSCI	CCNGG	6 cut(s)	700, 1447, 1560, 1954, 2052, 2308
BstSFI	CTRYAG	5 cut(s)	507, 2653, 2750, 3276, 3321
BstSLI	GKGCMC	2 cut(s)	211, 2227
BstV1I	GCAGC	8 cut(s)	80, 291, 718, 1554, 2267, 2639, 2667, 3307
BstV2I	GAAGAC	3 cut(s)	714, 1066, 1964
BstX2I	RGATCY	3 cut(s)	235, 1399, 2285
BstXI	CCANNNNNNTGG	1 cut(s)	1943
BstYI	RGATCY	3 cut(s)	235, 1399, 2285
Bsu15I	ATCGAT	2 cut(s)	1347, 2348
BsuI	GTATCC	3 cut(s)	442, 1559, 1649
BsuRI	GGCC	5 cut(s)	62, 597, 1875, 2019, 2182
BsuTUI	ATCGAT	2 cut(s)	1347, 2348
BtgI	CCRYGG	4 cut(s)	63, 328, 2158, 2676
BtsCI	GGATG	8 cut(s)	848, 1059, 1064, 1659, 1856, 2745, 3151, 3206
BtsI	GCAGTG	2 cut(s)	516, 2494
BtsIMutI	CAGTG	5 cut(s)	516, 913, 1248, 2328, 2494
Cac8I	GCNNGC	3 cut(s)	876, 2260, 2946
CaiI	CAGNNNCTG	1 cut(s)	2652
CciI	TCATGA	2 cut(s)	2766, 3297
CfoI	GCGC	3 cut(s)	309, 363, 2237
Cfr13I	GGNCC	5 cut(s)	43, 839, 1583, 2018, 2180
ClaI	ATCGAT	2 cut(s)	1347, 2348
CseI	GACGC	2 cut(s)	2950, 3326
Csp6I	GTAC	7 cut(s)	333, 984, 1696, 2681, 2808, 3013, 3029
CviQI	GTAC	7 cut(s)	333, 984, 1696, 2681, 2808, 3013, 3029
DraIII	CACNNNGTG	1 cut(s)	2231
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	4 cut(s)	108, 849, 2419, 2995
EarI	CTCTTC	4 cut(s)	108, 849, 2419, 2995
Eco130I	CCWWGG	3 cut(s)	328, 1299, 1995
Eco31I	GGTCTC	1 cut(s)	1061
Eco47I	GGWCC	3 cut(s)	43, 839, 1583
Eco57I	CTGAAG	5 cut(s)	295, 389, 605, 952, 1295
EcoO109I	RGGNCCY	1 cut(s)	2018
EcoRII	CCWGG	6 cut(s)	700, 1447, 1560, 1954, 2052, 2308
EcoT14I	CCWWGG	3 cut(s)	328, 1299, 1995
ErhI	CCWWGG	3 cut(s)	328, 1299, 1995
FauNDI	CATATG	1 cut(s)	1666
FbaI	TGATCA	1 cut(s)	3300
FblI	GTMKAC	2 cut(s)	766, 1678
Fnu4HI	GCNGC	9 cut(s)	69, 305, 732, 1543, 2256, 2653, 2656, 3321, 3343
FokI	GGATG	8 cut(s)	835, 1046, 1051, 1646, 1843, 2732, 3158, 3193
Fsp4HI	GCNGC	9 cut(s)	69, 305, 732, 1543, 2256, 2653, 2656, 3321, 3343
GlaI	GCGC	3 cut(s)	308, 362, 2236
GluI	GCNGC	9 cut(s)	69, 305, 732, 1543, 2256, 2653, 2656, 3321, 3343
GsaI	CCCAGC	3 cut(s)	174, 1524, 2847
GsuI	CTGGAG	2 cut(s)	677, 2952
HaeIII	GGCC	5 cut(s)	62, 597, 1875, 2019, 2182
HapII	CCGG	2 cut(s)	272, 1725
HgaI	GACGC	2 cut(s)	2950, 3326
HhaI	GCGC	3 cut(s)	309, 363, 2237
Hin6I	GCGC	3 cut(s)	307, 361, 2235
HinP1I	GCGC	3 cut(s)	307, 361, 2235
HincII	GTYRAC	4 cut(s)	165, 788, 1086, 1797
HindII	GTYRAC	4 cut(s)	165, 788, 1086, 1797
HpaI	GTTAAC	1 cut(s)	1797
HpaII	CCGG	2 cut(s)	272, 1725
HphI	GGTGA	3 cut(s)	118, 1016, 3237
HpyCH4IV	ACGT	1 cut(s)	669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 107, 180, 1324, 1449, 1521, 1530, 1539
HpySE526I	ACGT	1 cut(s)	669
HspAI	GCGC	3 cut(s)	307, 361, 2235
Kpn2I	TCCGGA	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	3300
KspAI	GTTAAC	1 cut(s)	1797
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	6 cut(s)	179, 266, 658, 1457, 2703, 2971
Lsp1109I	GCAGC	8 cut(s)	80, 291, 718, 1554, 2267, 2639, 2667, 3307
LweI	GCATC	5 cut(s)	223, 2789, 2851, 3136, 3262
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	9 cut(s)	223, 253, 1909, 2003, 2335, 2452, 2992, 3243, 3280
MfeI	CAATTG	3 cut(s)	1574, 2243, 2820
MflI	RGATCY	3 cut(s)	235, 1399, 2285
MhlI	GDGCHC	2 cut(s)	211, 2227
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	6 cut(s)	1080, 1821, 2148, 2898, 2923, 3251
MmeI	TCCRAC	2 cut(s)	2195, 2854
Mox20I	TGGCCA	1 cut(s)	62
MroI	TCCGGA	1 cut(s)	271
MroXI	GAANNNNTTC	3 cut(s)	1308, 2428, 2796
MscI	TGGCCA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	2321
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	2 cut(s)	272, 1725
MspR9I	CCNGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
MunI	CAATTG	3 cut(s)	1574, 2243, 2820
Mva1269I	GAATGC	2 cut(s)	1515, 2576
MvaI	CCWGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
MwoI	GCNNNNNNNGC	8 cut(s)	68, 107, 180, 1324, 1449, 1521, 1530, 1539
NcoI	CCATGG	1 cut(s)	328
NdeI	CATATG	1 cut(s)	1666
NheI	GCTAGC	1 cut(s)	2944
NlaIV	GGNNCC	9 cut(s)	262, 334, 406, 427, 1158, 1453, 2287, 2705, 2967
NmuCI	GTSAC	6 cut(s)	253, 1909, 2335, 2452, 3243, 3280
NspI	RCATGY	7 cut(s)	698, 721, 2047, 2262, 2378, 2695, 2882
NspV	TTCGAA	1 cut(s)	2446
PaeI	GCATGC	1 cut(s)	2262
PagI	TCATGA	2 cut(s)	2766, 3297
PciI	ACATGT	2 cut(s)	717, 2878
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PctI	GAATGC	2 cut(s)	1515, 2576
PdmI	GAANNNNTTC	3 cut(s)	1308, 2428, 2796
PfeI	GAWTC	8 cut(s)	373, 387, 1037, 1462, 1615, 2095, 2137, 2921
PflMI	CCANNNNNTGG	3 cut(s)	858, 2177, 2975
PkrI	GCNGC	9 cut(s)	70, 306, 733, 1544, 2257, 2654, 2657, 3322, 3344
PleI	GAGTC	6 cut(s)	1079, 1821, 2148, 2898, 2923, 3250
PpsI	GAGTC	6 cut(s)	1079, 1821, 2148, 2898, 2923, 3250
PscI	ACATGT	2 cut(s)	717, 2878
PshBI	ATTAAT	1 cut(s)	1485
Psp6I	CCWGG	6 cut(s)	700, 1447, 1560, 1954, 2052, 2308
PspFI	CCCAGC	3 cut(s)	170, 1520, 2843
PspGI	CCWGG	6 cut(s)	700, 1447, 1560, 1954, 2052, 2308
PspN4I	GGNNCC	9 cut(s)	262, 334, 406, 427, 1158, 1453, 2287, 2705, 2967
PspPI	GGNCC	5 cut(s)	43, 839, 1583, 2018, 2180
PsrI	GAACNNNNNNTAC	2 cut(s)	1662, 1694
PstI	CTGCAG	4 cut(s)	511, 2657, 2754, 3325
PstNI	CAGNNNCTG	1 cut(s)	2652
PsuI	RGATCY	3 cut(s)	235, 1399, 2285
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	7 cut(s)	334, 985, 1697, 2682, 2809, 3014, 3030
RsaNI	GTAC	7 cut(s)	333, 984, 1696, 2681, 2808, 3013, 3029
RseI	CAYNNNNRTG	1 cut(s)	2321
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	9 cut(s)	69, 305, 732, 1543, 2256, 2653, 2656, 3321, 3343
Sau96I	GGNCC	5 cut(s)	43, 839, 1583, 2018, 2180
SchI	GAGTC	6 cut(s)	1080, 1821, 2148, 2898, 2923, 3251
ScrFI	CCNGG	6 cut(s)	702, 1449, 1562, 1956, 2054, 2310
SduI	GDGCHC	2 cut(s)	211, 2227
SfaNI	GCATC	5 cut(s)	223, 2789, 2851, 3136, 3262
SfcI	CTRYAG	5 cut(s)	507, 2653, 2750, 3276, 3321
SfuI	TTCGAA	1 cut(s)	2446
SinI	GGWCC	3 cut(s)	43, 839, 1583
SmiMI	CAYNNNNRTG	1 cut(s)	2321
SmlI	CTYRAG	1 cut(s)	1633
SmoI	CTYRAG	1 cut(s)	1633
SphI	GCATGC	1 cut(s)	2262
SsiI	CCGC	1 cut(s)	3343
StyD4I	CCNGG	6 cut(s)	700, 1447, 1560, 1954, 2052, 2308
StyI	CCWWGG	3 cut(s)	328, 1299, 1995
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	7 cut(s)	26, 77, 220, 1347, 1787, 2348, 2446
TaqII	GACCGA	1 cut(s)	827
TatI	WGTACW	3 cut(s)	1695, 3012, 3028
TauI	GCSGC	1 cut(s)	3345
TfiI	GAWTC	8 cut(s)	373, 387, 1037, 1462, 1615, 2095, 2137, 2921
TscAI	CASTG	5 cut(s)	516, 913, 1248, 2328, 2494
TseFI	GTSAC	6 cut(s)	253, 1909, 2335, 2452, 3243, 3280
TseI	GCWGC	8 cut(s)	68, 304, 731, 1542, 2255, 2652, 2655, 3320
Tsp45I	GTSAC	6 cut(s)	253, 1909, 2335, 2452, 3243, 3280
TspGWI	ACGGA	2 cut(s)	2147, 2996
TspRI	CASTG	5 cut(s)	516, 913, 1248, 2328, 2494
Van91I	CCANNNNNTGG	3 cut(s)	858, 2177, 2975
VneI	GTGCAC	2 cut(s)	207, 2223
VpaK11BI	GGWCC	3 cut(s)	43, 839, 1583
VspI	ATTAAT	1 cut(s)	1485
XapI	RAATTY	5 cut(s)	624, 1789, 1849, 2166, 3109
XbaI	TCTAGA	2 cut(s)	1469, 2107
XceI	RCATGY	7 cut(s)	698, 721, 2047, 2262, 2378, 2695, 2882
XcmI	CCANNNNNNNNNTGG	2 cut(s)	855, 1818
XmiI	GTMKAC	2 cut(s)	766, 1678
XmnI	GAANNNNTTC	3 cut(s)	1308, 2428, 2796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.