Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010474

Physical Location & Seq

Genomic Coordinates Reverse (-)

15953549 .. 15958548

Gene Structure 5000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G241500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCTTCGATACTTCTTCGATGCCGTTTAGTCTCCCGGGTATTAAAGCGTAATCGACGCCTATTCAGCTCCGATGTGGCTTCAACCCCTCCCAAAGAGCCGCTCATCGGGGCTCAATCCCTAGTCTCCGATCTCACACCTCCCCCTCCACCACCGCCACCACCACCTAGCACTGAGGCTTCGAACGCGTCAAGTGGAAAAGCTTGGAACTTCCTCAAGTACTCGCTCATTGGCGCGATCACTGGAGCCACTGCCACTGTTGGTTATGCCTCCTATGCGTACTCTGTGGATGAAATCGAGGAAAAGACGAAGGCTCTCCGGGCAGCACCTTCAAATATCAAGGTGGCAGATGATGCACCTGCTCTTGAGAAATTCAAAAATCGGGTATACTCTTCTGCAATTACAGTGCCTGCTAAAGCAGCCGAAGTTTATATTGATGCAAGGAGGACGATTGAAGAACAAATTCGAGGTTATACTGAACCATACGCAGAGAAGCTTCTTCCAGATTTGCATCCCATGGAACGACATGTTTTTACACTTGTTTTGGATCTCCAGGAGACATTACTTTACTCTTATTGGACGCGAGAAAAGGGTTGGCAGACTATCAAAAGACCTGGAGTTGATGCTTTCTTGGAACATCTTGCTCAATTTTATGAAATCATCGTGTATTCAGACTATTCTAATATGTATGTAGATCCTGTAATGGAGAGACTGGACACAAAGCATTGTGTAAGATATAGGCTAGGAAAGGCTGCCACTAAGTATCAGAACGGAAAACACTATAGGGACCTTTCCAAACTTAATAGAGATCCAAATAAAATCATCTATCTGAGTGCCCATGCACGAGAAAATAGCCTTCAGCCTGAAAATGGTGCCATAATAAAGCCATACAAGTATGAGATGGATGACACAGCTCTTGTGGATTTCATACCATTTCTTGAATTTGTCGCCCGTAACCCTCCAGCAGATATTAGGCAAGTATTAGCATCATATGAAGGGCGTGATATCCCTGCAGAGTTCATTAGGCGTTCTAAAGAGCATCAGAGGCGAATGCAAGAACAGAAGCAGCAAGGTCGATTGTGGAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

364

Amino Acids

41.54

Weight (kDa)

9.25

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55900 AT1G55900
fragaria_vesca	FvH4_3g29430 FvH4_3g29430
malus_domestica	MD03G1185000.v1.1 MD11G1201300.v1.1
prunus_persica	Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1
pyrus_communis	pycom03g13810
rosa_chinensis	RchiOBHm_Chr5g0053871
rosa_laevigata	RLG00000034907
rosa_roxburghii	Rroxscaffold_1G00026740
rosa_rugosa	Rorug05G0283800 Rorug05G0283900
rosa_samantha	Rh5AG353600 Rh5BG365200 Rh5CG390300 Rh5DG380100
rosa_wichuraiana	Rw0G002120 Rw0G009530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	872
AccBSI	CCGCTC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	3 cut(s)	188, 236, 583
AciI	CCGC	2 cut(s)	101, 155
AclWI	GGATC	3 cut(s)	555, 689, 803
AcsI	RAATTY	3 cut(s)	371, 462, 941
AcuI	CTGAAG	1 cut(s)	842
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	221, 281
AfiI	CCNNNNNNNGG	2 cut(s)	107, 869
AflIII	ACRYGT	2 cut(s)	186, 526
AgsI	TTSAA	5 cut(s)	84, 333, 376, 455, 941
AjnI	CCWGG	2 cut(s)	552, 613
AluBI	AGCT	4 cut(s)	69, 203, 496, 914
AluI	AGCT	4 cut(s)	69, 203, 496, 914
Alw26I	GTCTC	5 cut(s)	37, 130, 551, 703, 1078
AlwI	GGATC	3 cut(s)	555, 689, 803
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	323, 419, 752, 1066
ApoI	RAATTY	3 cut(s)	371, 462, 941
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	787
AsuC2I	CCSGG	3 cut(s)	37, 38, 320
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	787
BaeGI	GKGCMC	1 cut(s)	838
BanI	GGYRCC	1 cut(s)	872
BanII	GRGCYC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	843
BbvI	GCAGC	4 cut(s)	335, 431, 739, 1078
BccI	CCATC	1 cut(s)	895
BceAI	ACGGC	1 cut(s)	9
BcgI	CGANNNNNNTGC	2 cut(s)	1055, 1089
BciT130I	CCWGG	2 cut(s)	554, 615
BcnI	CCSGG	3 cut(s)	37, 38, 320
BcoDI	GTCTC	5 cut(s)	37, 130, 551, 703, 1078
BfaI	CTAG	3 cut(s)	122, 168, 743
BfmI	CTRYAG	2 cut(s)	781, 1011
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	5 cut(s)	101, 324, 420, 753, 1067
BlsI	GCNGC	5 cut(s)	102, 325, 421, 754, 1068
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	5 cut(s)	37, 38, 320, 554, 615
Bme18I	GGWCC	1 cut(s)	787
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	3 cut(s)	247, 788, 874
BmrFI	CCNGG	5 cut(s)	37, 38, 320, 554, 615
BmsI	GCATC	7 cut(s)	11, 343, 427, 520, 613, 995, 1048
BpmI	CTGGAG	4 cut(s)	264, 536, 636, 945
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	200, 386
BpuMI	CCSGG	3 cut(s)	37, 38, 320
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	36, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 869
Bse1I	ACTGG	2 cut(s)	247, 717
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	554, 615
BseDI	CCNNGG	2 cut(s)	36, 516
BseGI	GGATG	3 cut(s)	295, 511, 910
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	107, 869
BseMII	CTCAG	2 cut(s)	165, 821
BseNI	ACTGG	2 cut(s)	247, 717
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	4 cut(s)	335, 431, 739, 1078
Bsh1236I	CGCG	3 cut(s)	188, 236, 583
BshNI	GGYRCC	1 cut(s)	872
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	37, 319
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	2 cut(s)	107, 869
BsmAI	GTCTC	5 cut(s)	37, 130, 551, 703, 1078
BsmBI	CGTCTC	1 cut(s)	1078
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	1 cut(s)	1056
BsoBI	CYCGRG	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	115, 838
Bsp143I	GATC	5 cut(s)	130, 237, 547, 694, 808
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	2 cut(s)	101, 155
BspCNI	CTCAG	2 cut(s)	166, 822
BspFNI	CGCG	3 cut(s)	188, 236, 583
BspLI	GGNNCC	3 cut(s)	247, 788, 874
BspMAI	CTGCAG	1 cut(s)	1015
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	3 cut(s)	555, 689, 803
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	872
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	247, 717
BssECI	CCNNGG	2 cut(s)	36, 516
BssMI	GATC	5 cut(s)	130, 237, 547, 694, 808
BssNAI	GTATAC	1 cut(s)	388
BssNI	GRCGYC	1 cut(s)	58
BssSI	CACGAG	1 cut(s)	843
BssT1I	CCWWGG	1 cut(s)	516
Bst1107I	GTATAC	1 cut(s)	388
Bst2BI	CACGAG	1 cut(s)	843
Bst2UI	CCWGG	2 cut(s)	554, 615
Bst4CI	ACNGT	2 cut(s)	259, 406
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	174, 759, 830
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	295, 511, 910
BstFNI	CGCG	3 cut(s)	188, 236, 583
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	5 cut(s)	133, 240, 550, 697, 811
BstMAI	GTCTC	5 cut(s)	37, 130, 551, 703, 1078
BstMBI	GATC	5 cut(s)	130, 237, 547, 694, 808
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 185, 275, 320, 353, 419, 1045
BstNI	CCWGG	2 cut(s)	554, 615
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	5 cut(s)	35, 36, 318, 552, 613
BstSFI	CTRYAG	2 cut(s)	781, 1011
BstSLI	GKGCMC	1 cut(s)	838
BstUI	CGCG	3 cut(s)	188, 236, 583
BstV1I	GCAGC	4 cut(s)	335, 431, 739, 1078
BstX2I	RGATCY	3 cut(s)	547, 694, 808
BstYI	RGATCY	3 cut(s)	547, 694, 808
BstZ17I	GTATAC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	295, 511, 910
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	5 cut(s)	171, 240, 249, 255, 411
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	787
Cfr9I	CCCGGG	1 cut(s)	36
CseI	GACGC	3 cut(s)	66, 177, 589
Csp6I	GTAC	2 cut(s)	220, 280
CviAII	CATG	3 cut(s)	517, 527, 839
CviQI	GTAC	2 cut(s)	220, 280
DdeI	CTNAG	3 cut(s)	174, 759, 830
DpnI	GATC	5 cut(s)	132, 239, 549, 696, 810
DpnII	GATC	5 cut(s)	130, 237, 547, 694, 808
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	1006
Eco47I	GGWCC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRII	CCWGG	2 cut(s)	552, 613
EcoRV	GATATC	1 cut(s)	1006
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	1078
FaeI	CATG	3 cut(s)	520, 530, 842
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	3 cut(s)	516, 526, 838
FauNDI	CATATG	1 cut(s)	991
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	5 cut(s)	101, 324, 420, 753, 1067
FokI	GGATG	3 cut(s)	302, 498, 917
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	5 cut(s)	101, 324, 420, 753, 1067
FspBI	CTAG	3 cut(s)	122, 168, 743
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	5 cut(s)	101, 324, 420, 753, 1067
GsuI	CTGGAG	4 cut(s)	264, 536, 636, 945
HapII	CCGG	2 cut(s)	37, 319
HgaI	GACGC	3 cut(s)	66, 177, 589
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	520, 530, 842
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	2 cut(s)	201, 494
HpaII	CCGG	2 cut(s)	37, 319
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	6 cut(s)	73, 130, 673, 768, 831, 1044
Hpy188III	TCNNGA	3 cut(s)	365, 503, 938
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	4 cut(s)	304, 339, 866, 989
HpyCH4III	ACNGT	2 cut(s)	259, 406
HpyCH4IV	ACGT	1 cut(s)	1087
HpyCH4V	TGCA	7 cut(s)	356, 398, 440, 511, 842, 1013, 1054
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 185, 275, 320, 353, 419, 1045
HpyF3I	CTNAG	3 cut(s)	174, 759, 830
HpySE526I	ACGT	1 cut(s)	1087
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	520, 530, 842
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	5 cut(s)	130, 237, 547, 694, 808
LmnI	GCTCC	2 cut(s)	74, 245
Lsp1109I	GCAGC	4 cut(s)	335, 431, 739, 1078
LweI	GCATC	7 cut(s)	11, 343, 427, 520, 613, 995, 1048
MaeI	CTAG	3 cut(s)	122, 168, 743
MaeII	ACGT	1 cut(s)	1087
MaeIII	GTNAC	1 cut(s)	953
MalI	GATC	5 cut(s)	132, 239, 549, 696, 810
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	5 cut(s)	130, 237, 547, 694, 808
MboII	GAAGA	4 cut(s)	8, 384, 467, 491
MflI	RGATCY	3 cut(s)	547, 694, 808
MhlI	GDGCHC	2 cut(s)	115, 838
MluCI	AATT	5 cut(s)	371, 399, 462, 647, 941
MluI	ACGCGT	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	2 cut(s)	44, 801
MspI	CCGG	2 cut(s)	37, 319
MspR9I	CCNGG	5 cut(s)	37, 38, 320, 554, 615
Mva1269I	GAATGC	1 cut(s)	1056
MvaI	CCWGG	2 cut(s)	554, 615
MvnI	CGCG	3 cut(s)	188, 236, 583
MwoI	GCNNNNNNNGC	7 cut(s)	66, 185, 275, 320, 353, 419, 1045
NciI	CCSGG	3 cut(s)	37, 38, 320
NcoI	CCATGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	5 cut(s)	130, 237, 547, 694, 808
NlaIII	CATG	3 cut(s)	520, 530, 842
NlaIV	GGNNCC	3 cut(s)	247, 788, 874
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	182
PaqCI	CACCTGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	526
PctI	GAATGC	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	102, 325, 421, 754, 1068
PpuMI	RGGWCCY	1 cut(s)	787
PscI	ACATGT	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	552, 613
PspGI	CCWGG	2 cut(s)	552, 613
PspN4I	GGNNCC	3 cut(s)	247, 788, 874
PspPI	GGNCC	1 cut(s)	787
PspPPI	RGGWCCY	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	3 cut(s)	547, 694, 808
RsaI	GTAC	2 cut(s)	221, 281
RsaNI	GTAC	2 cut(s)	220, 280
SaqAI	TTAA	2 cut(s)	44, 801
SatI	GCNGC	5 cut(s)	101, 324, 420, 753, 1067
Sau3AI	GATC	5 cut(s)	130, 237, 547, 694, 808
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	1 cut(s)	221
ScrFI	CCNGG	5 cut(s)	37, 38, 320, 554, 615
SduI	GDGCHC	2 cut(s)	115, 838
SfaNI	GCATC	7 cut(s)	11, 343, 427, 520, 613, 995, 1048
SfcI	CTRYAG	2 cut(s)	781, 1011
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	787
SmaI	CCCGGG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	215, 365
SmoI	CTYRAG	2 cut(s)	215, 365
Sse9I	AATT	5 cut(s)	371, 399, 462, 647, 941
SsiI	CCGC	2 cut(s)	101, 155
SspMI	CTAG	3 cut(s)	122, 168, 743
StyD4I	CCNGG	5 cut(s)	35, 36, 318, 552, 613
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	259, 406
TaiI	ACGT	1 cut(s)	1090
TaqI	TCGA	7 cut(s)	8, 19, 55, 182, 297, 466, 1075
TasI	AATT	5 cut(s)	371, 399, 462, 647, 941
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	44, 801
Tru9I	TTAA	2 cut(s)	44, 801
TscAI	CASTG	5 cut(s)	178, 247, 256, 262, 411
TseI	GCWGC	4 cut(s)	323, 419, 752, 1066
TspDTI	ATGAA	5 cut(s)	306, 669, 916, 1008, 1009
TspGWI	ACGGA	1 cut(s)	786
TspMI	CCCGGG	1 cut(s)	36
TspRI	CASTG	5 cut(s)	178, 247, 256, 262, 411
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	3 cut(s)	371, 462, 941
XceI	RCATGY	1 cut(s)	530
XmaI	CCCGGG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	3 cut(s)	122, 168, 743
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.