Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010474

Physical Location & Seq

Genomic Coordinates Forward (+)

22509762 .. 22514702

Gene Structure 4941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCTTCCATAACACTCCGCTCCCGTTTAACCTCTCTCCTTTCCAAGCGCGGCCGCCGCCTATTCAGCACCGACTTCGCTCCCAAAGAGCCATTCGCTGCCGCCGAAACCCTCTCCTCCAATCCCACACCGCCTCCGACCGCCGCCCCCGCTGCCGCCAATAGAAAGCCCTGGAAGTTCCTCAAGTACTCCCTCATTGCCGCTCTCACCGGAGCCACCGCCTCCGTTGGCTATGTCTCCTATGCTTACTCGTTCGACGAAATTGATGAAAAGACAAAGGCTCTGCGAGAAGAGTGTGCGAGTATCGAGATTCCAGATGATGCTTCTGTTATTGATAAATTCAAAAGTATGGTCTATTCTTCTGCAATTACAGTTCCTGCTAAAGCAGCTGAAGCTTACCTTGATGCAAGGAGGGCAATTGAAGAACAAGTTCGAGGTTATACTGAACCATACGCAGAAAAGCTTCTTCCTGATATGCTCCCTATCCATAGAAATATGTGTACACTTGTTCTGGATCTACAGGAGACATTACTTTATTCTTATTGGACGAGAGAAAAGGGCTGGCAGACAATTAAAAGACCTGGAGTTGATGCTTTCTTAGAACATCTTGCTCAGTTTTATGAAATTGTTGTGTTTTCAGACTATTCACAAATGTACGTAGATCCTGTAATGGAGAGACTGGACCCAAAACATTGTGTAATTTGGAGGCTAGGAAAGGCTGCCACCAAGTATCAGGATGGAGTGCATTATAGGGACCTTTCAAAGCTAAATAGAGATCCAAGAAAGATCATATATCTTAGTGCCCATGCACGAGAAAATAGCCTTCAGCCTGAAAATGGTGCCGTGATAAAGCCATTTAAGTCTGAGTTGGATGATACAGCTCTTGTAGATTTCATCCCATTTCTTGAATTTGTTGCGCGGAGCAATCCAGCAGATGTCAGACAAGTATTAGCATCATATGAAGGACAGGAAATTCCTGCTGAGTTTATTAGGCGTTCCAAGGAGCATCAGAGGAAAATGCAAGAAAAGAAGCAGCATACAATCTGGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

352

Amino Acids

40.15

Weight (kDa)

8.71

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	168 - 314	2.3e-35	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55900 AT1G55900
fragaria_vesca	FvH4_3g29430 FvH4_3g29430
malus_domestica	MD03G1185000.v1.1 MD11G1201300.v1.1
prunus_persica	Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1
pyrus_communis	pycom03g13810
rosa_chinensis	RchiOBHm_Chr5g0053871
rosa_laevigata	RLG00000034907
rosa_roxburghii	Rroxscaffold_1G00026740
rosa_rugosa	Rorug05G0283800 Rorug05G0283900
rosa_samantha	Rh5AG353600 Rh5BG365200 Rh5CG390300 Rh5DG380100
rosa_wichuraiana	Rw0G002120 Rw0G009530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	839
AccBSI	CCGCTC	2 cut(s)	21, 203
AccII	CGCG	2 cut(s)	51, 919
AclWI	GGATC	3 cut(s)	522, 656, 770
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	338, 908, 972
AcuI	CTGAAG	2 cut(s)	411, 809
AfaI	GTAC	3 cut(s)	188, 502, 656
AfiI	CCNNNNNNNGG	1 cut(s)	836
AgsI	TTSAA	4 cut(s)	343, 422, 762, 908
AjnI	CCWGG	2 cut(s)	170, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	5 cut(s)	389, 395, 463, 766, 881
AluI	AGCT	5 cut(s)	389, 395, 463, 766, 881
Alw26I	GTCTC	3 cut(s)	241, 518, 670
AlwI	GGATC	3 cut(s)	522, 656, 770
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	5 cut(s)	98, 152, 386, 719, 1033
ApoI	RAATTY	3 cut(s)	338, 908, 972
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
Asp700I	GAANNNNTTC	2 cut(s)	429, 462
AspLEI	GCGC	2 cut(s)	51, 919
AspS9I	GGNCC	2 cut(s)	682, 754
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	682, 754
BaeGI	GKGCMC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	839
BauI	CACGAG	1 cut(s)	810
BbvI	GCAGC	5 cut(s)	85, 139, 398, 706, 1045
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	1 cut(s)	827
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	2 cut(s)	172, 582
BcoDI	GTCTC	3 cut(s)	241, 518, 670
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	518
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	172, 582
Bme18I	GGWCC	2 cut(s)	682, 754
BmgT120I	GGNCC	2 cut(s)	682, 754
BmiI	GGNNCC	4 cut(s)	214, 684, 755, 841
BmrFI	CCNGG	2 cut(s)	172, 582
BmsI	GCATC	5 cut(s)	310, 394, 580, 962, 1015
BpmI	CTGGAG	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	170, 999
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	172, 582
BseDI	CCNNGG	2 cut(s)	170, 999
BseGI	GGATG	3 cut(s)	742, 877, 894
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	3 cut(s)	626, 855, 972
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	805
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	5 cut(s)	85, 139, 398, 706, 1045
Bsh1236I	CGCG	2 cut(s)	51, 919
Bsh1285I	CGRYCG	2 cut(s)	55, 141
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	839
BsiEI	CGRYCG	2 cut(s)	55, 141
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	3 cut(s)	241, 518, 670
BsmFI	GGGAC	1 cut(s)	767
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	514, 661, 775, 786
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	3 cut(s)	625, 856, 973
BspFNI	CGCG	2 cut(s)	51, 919
BspLI	GGNNCC	4 cut(s)	214, 684, 755, 841
BspPI	GGATC	3 cut(s)	522, 656, 770
BspT107I	GGYRCC	1 cut(s)	839
BsrBI	CCGCTC	2 cut(s)	21, 203
BsrDI	GCAATG	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	2 cut(s)	170, 999
BssMI	GATC	4 cut(s)	514, 661, 775, 786
BssSI	CACGAG	1 cut(s)	810
BssT1I	CCWWGG	1 cut(s)	999
Bst2BI	CACGAG	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	172, 582
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	5 cut(s)	598, 612, 797, 864, 981
BstF5I	GGATG	3 cut(s)	742, 877, 894
BstFNI	CGCG	2 cut(s)	51, 919
BstHHI	GCGC	2 cut(s)	51, 919
BstKTI	GATC	4 cut(s)	517, 664, 778, 789
BstMAI	GTCTC	3 cut(s)	241, 518, 670
BstMBI	GATC	4 cut(s)	514, 661, 775, 786
BstMCI	CGRYCG	2 cut(s)	55, 141
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 66, 149, 152, 386, 392, 413
BstNI	CCWGG	2 cut(s)	172, 582
BstSCI	CCNGG	2 cut(s)	170, 580
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	805
BstSNI	TACGTA	1 cut(s)	658
BstUI	CGCG	2 cut(s)	51, 919
BstV1I	GCAGC	5 cut(s)	85, 139, 398, 706, 1045
BstX2I	RGATCY	3 cut(s)	514, 661, 775
BstYI	RGATCY	3 cut(s)	514, 661, 775
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	742, 877, 894
Cac8I	GCNNGC	1 cut(s)	563
CaiI	CAGNNNCTG	1 cut(s)	377
CciNI	GCGGCCGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	51, 919
Cfr13I	GGNCC	2 cut(s)	682, 754
Csp6I	GTAC	3 cut(s)	187, 501, 655
CviAII	CATG	1 cut(s)	806
CviQI	GTAC	3 cut(s)	187, 501, 655
DdeI	CTNAG	5 cut(s)	598, 612, 797, 864, 981
DpnI	GATC	4 cut(s)	516, 663, 777, 788
DpnII	GATC	4 cut(s)	514, 661, 775, 786
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	999
Eco47I	GGWCC	2 cut(s)	682, 754
Eco52I	CGGCCG	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	411, 809
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	170, 580
EcoT14I	CCWWGG	1 cut(s)	999
ErhI	CCWWGG	1 cut(s)	999
FaeI	CATG	1 cut(s)	809
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	1 cut(s)	805
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	958
FokI	GGATG	3 cut(s)	749, 881, 884
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	2 cut(s)	50, 918
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	2 cut(s)	51, 919
Hin1II	CATG	1 cut(s)	809
Hin6I	GCGC	2 cut(s)	49, 917
HinP1I	GCGC	2 cut(s)	49, 917
HindIII	AAGCTT	2 cut(s)	393, 461
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	501, 503
Hpy188I	TCNGA	5 cut(s)	138, 640, 865, 941, 1011
Hpy188III	TCNNGA	7 cut(s)	307, 314, 470, 512, 734, 905, 1045
Hpy8I	GTNNAC	2 cut(s)	501, 503
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	833, 956
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	5 cut(s)	365, 407, 745, 809, 1021
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 66, 149, 152, 386, 392, 413
HpyF3I	CTNAG	5 cut(s)	598, 612, 797, 864, 981
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	1 cut(s)	809
HspAI	GCGC	2 cut(s)	49, 917
Kzo9I	GATC	4 cut(s)	514, 661, 775, 786
LmnI	GCTCC	6 cut(s)	26, 85, 212, 483, 921, 1003
Lsp1109I	GCAGC	5 cut(s)	85, 139, 398, 706, 1045
LweI	GCATC	5 cut(s)	310, 394, 580, 962, 1015
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	1 cut(s)	657
MalI	GATC	4 cut(s)	516, 663, 777, 788
MbiI	CCGCTC	2 cut(s)	21, 203
MboI	GATC	4 cut(s)	514, 661, 775, 786
MboII	GAAGA	4 cut(s)	302, 351, 434, 458
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	3 cut(s)	514, 661, 775
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	9 cut(s)	261, 338, 366, 417, 570, 624, 699, 908, 972
MmeI	TCCRAC	2 cut(s)	161, 849
MroXI	GAANNNNTTC	2 cut(s)	429, 462
MseI	TTAA	3 cut(s)	29, 573, 858
MspA1I	CMGCKG	2 cut(s)	152, 389
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	172, 582
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	172, 582
MvnI	CGCG	2 cut(s)	51, 919
MwoI	GCNNNNNNNGC	7 cut(s)	57, 66, 149, 152, 386, 392, 413
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	4 cut(s)	514, 661, 775, 786
NlaIII	CATG	1 cut(s)	809
NlaIV	GGNNCC	4 cut(s)	214, 684, 755, 841
NotI	GCGGCCGC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	429, 462
PfeI	GAWTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	2 cut(s)	170, 580
PspGI	CCWGG	2 cut(s)	170, 580
PspN4I	GGNNCC	4 cut(s)	214, 684, 755, 841
PspPI	GGNCC	2 cut(s)	682, 754
PspPPI	RGGWCCY	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	3 cut(s)	514, 661, 775
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	3 cut(s)	188, 502, 656
RsaNI	GTAC	3 cut(s)	187, 501, 655
SaqAI	TTAA	3 cut(s)	29, 573, 858
Sau3AI	GATC	4 cut(s)	514, 661, 775, 786
Sau96I	GGNCC	2 cut(s)	682, 754
ScaI	AGTACT	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	172, 582
SduI	GDGCHC	1 cut(s)	805
SfaNI	GCATC	5 cut(s)	310, 394, 580, 962, 1015
SfcI	CTRYAG	1 cut(s)	518
SinI	GGWCC	2 cut(s)	682, 754
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SnaBI	TACGTA	1 cut(s)	658
Sse9I	AATT	9 cut(s)	261, 338, 366, 417, 570, 624, 699, 908, 972
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	2 cut(s)	170, 580
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	255, 306, 433
TasI	AATT	9 cut(s)	261, 338, 366, 417, 570, 624, 699, 908, 972
TatI	WGTACW	2 cut(s)	186, 500
TauI	GCSGC	7 cut(s)	54, 57, 60, 104, 146, 158, 203
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	29, 573, 858
Tru9I	TTAA	3 cut(s)	29, 573, 858
TseI	GCWGC	5 cut(s)	98, 152, 386, 719, 1033
TspDTI	ATGAA	4 cut(s)	282, 636, 883, 975
TspGWI	ACGGA	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	682, 754
XapI	RAATTY	3 cut(s)	338, 908, 972
XmnI	GAANNNNTTC	2 cut(s)	429, 462
XspI	CTAG	1 cut(s)	710
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.