Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00372

Orthogroup ID

OG0010474

Physical Location & Seq

Genomic Coordinates Reverse (-)

1074 .. 1806

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCTTCAACACTACTTCGCTCCCGTTTAGCCTCTCTCGTATCGAAGCGCGGTCGCCGTCTGTTGAGCTCCGACGTGGCTTCAAATCCTCCTAAGGACCCATTCGTTGCCGCCGAAACCCTCGCTTCCAATCGCACAGCTCCTCCACCTCCACCGCCAAGCGCCGCCGCTGCGAGCGCGTCAACTAGAAAGCCCTGGAGCTTTCTCAAGTACTCCCTCATTGGCGCTCTCACCGGCGCCACCGCCTCTGTTGCTTATGTTTCCTATGCTTACTCGATCGATGAAATAGCTGAAAAGACAAAGGCTCTGCGAGTAGCGCGTGCAAGTATCGAAATTCCAGATGATGCGTCCACTCTTGAC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

120

Amino Acids

12.61

Weight (kDa)

9.81

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55900 AT1G55900
fragaria_vesca	FvH4_3g29430 FvH4_3g29430
malus_domestica	MD03G1185000.v1.1 MD11G1201300.v1.1
prunus_persica	Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1 Prupe.4G241500_v2.0.a1
pyrus_communis	pycom03g13810
rosa_chinensis	RchiOBHm_Chr5g0053871
rosa_laevigata	RLG00000034907
rosa_roxburghii	Rroxscaffold_1G00026740
rosa_rugosa	Rorug05G0283800 Rorug05G0283900
rosa_samantha	Rh5AG353600 Rh5BG365200 Rh5CG390300 Rh5DG380100
rosa_wichuraiana	Rw0G002120 Rw0G009530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	3 cut(s)	51, 179, 319
AciI	CCGC	6 cut(s)	51, 111, 155, 165, 168, 243
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	9, 84
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	4 cut(s)	69, 140, 201, 290
AluI	AGCT	4 cut(s)	69, 140, 201, 290
Alw21I	GWGCWC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	6 cut(s)	51, 164, 179, 227, 239, 319
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	196
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	3 cut(s)	165, 228, 240
BisI	GCNGC	4 cut(s)	111, 165, 168, 171
BlsI	GCNGC	4 cut(s)	112, 166, 169, 172
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	99, 238
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bse118I	RCCGGY	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	196
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	3 cut(s)	51, 179, 319
Bsh1285I	CGRYCG	2 cut(s)	55, 279
BshNI	GGYRCC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	2 cut(s)	55, 279
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	6 cut(s)	51, 111, 155, 165, 168, 243
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	3 cut(s)	51, 179, 319
BspLI	GGNNCC	2 cut(s)	99, 238
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	175, 321
BstDEI	CTNAG	1 cut(s)	93
BstFNI	CGCG	3 cut(s)	51, 179, 319
BstH2I	RGCGCY	3 cut(s)	165, 228, 240
BstHHI	GCGC	6 cut(s)	51, 164, 179, 227, 239, 319
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	2 cut(s)	55, 279
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 176, 251, 316
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstUI	CGCG	3 cut(s)	51, 179, 319
BstV1I	GCAGC	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	175, 321
CfoI	GCGC	6 cut(s)	51, 164, 179, 227, 239, 319
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	2 cut(s)	168, 336
Csp6I	GTAC	1 cut(s)	211
CviJI	RGCY	8 cut(s)	32, 69, 80, 140, 193, 201, 290, 305
CviKI_1	RGCY	8 cut(s)	32, 69, 80, 140, 193, 201, 290, 305
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	71
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
FaiI	YATR	2 cut(s)	258, 267
Fnu4HI	GCNGC	4 cut(s)	111, 165, 168, 171
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	111, 165, 168, 171
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	6 cut(s)	50, 163, 178, 226, 238, 318
GluI	GCNGC	4 cut(s)	111, 165, 168, 171
GsuI	CTGGAG	1 cut(s)	217
HaeII	RGCGCY	3 cut(s)	165, 228, 240
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	2 cut(s)	168, 336
HhaI	GCGC	6 cut(s)	51, 164, 179, 227, 239, 319
Hin1I	GRCGYC	1 cut(s)	237
Hin6I	GCGC	6 cut(s)	49, 162, 177, 225, 237, 317
HinP1I	GCGC	6 cut(s)	49, 162, 177, 225, 237, 317
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	183, 351
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	338, 356
Hpy8I	GTNNAC	2 cut(s)	183, 351
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 176, 251, 316
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	237
HspAI	GCGC	6 cut(s)	49, 162, 177, 225, 237, 317
KasI	GGCGCC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	4 cut(s)	26, 74, 145, 198
LpnPI	CCDG	4 cut(s)	181, 208, 247, 351
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	75
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	1 cut(s)	333
Mly113I	GGCGCC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	43, 99, 131, 153, 159, 227, 256
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	3 cut(s)	51, 179, 319
MwoI	GCNNNNNNNGC	4 cut(s)	170, 176, 251, 316
NarI	GGCGCC	1 cut(s)	237
NdeII	GATC	1 cut(s)	276
NlaIV	GGNNCC	2 cut(s)	99, 238
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	112, 166, 169, 172
Ple19I	CGATCG	1 cut(s)	279
PluTI	GGCGCC	1 cut(s)	240
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	99, 238
PspPI	GGNCC	1 cut(s)	97
PspPPI	RGGWCCY	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	71
SatI	GCNGC	4 cut(s)	111, 165, 168, 171
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	6 cut(s)	71, 78, 142, 151, 203, 292
SfaNI	GCATC	1 cut(s)	334
SfoI	GGCGCC	1 cut(s)	238
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	6 cut(s)	51, 111, 155, 165, 168, 243
SspDI	GGCGCC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	194
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	44, 275, 279, 330
TasI	AATT	1 cut(s)	333
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	3 cut(s)	113, 167, 170
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	333
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.