Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Reverse (-)

21185592 .. 21188369

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCGCAGCAGAGCCAACGTCCAATCTCAAACCGTCACATCTCTCTCCTCAACCGTAACGGTCTCATCCTCCTTCTCCTTCTAGCTCTCTTTGTTATCCTCGGTGTATTCTTACCTTTGACAAAATCTTCCTTGTTCATGTTTCCAAACACAACATCTTCTTCTCTTTCTCCTTCTTCTTCTTTATCGGTCTCCGACTGGCGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTTGCTAAGAACGAGACTGTGATCGTCTGTGCTGTTAGCTACCCTTTCTTGCCTTTTCTTAACAACTGGTTGATTAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGACTATGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCGGCGTTGGATCCTCAATCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATCTCGGAGGCCACAACATCTCTTAAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGATATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATACTTCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGATTTACCACCTCTAAGTCGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGGCGGAAAGCTTCTAATGAAGACATGGGTCGAGGAAATTCAAGCTCAACCTTGGAATAACACTCAAGCAAAGAAACCACATGATCAGCCTGCTTTTAATCGGGCACTTCACAAAACAGCTAATCAAGTAAAAGTCTACTTGCTTCCGCAATCAGCTTTCCCATCAGGAGGATTGTACTTCAGGAATGAGACATGGGTTAACGAGACAAGGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTTACGACAAGAAGATGAAACGTTTTCAAGACTTTAGTCTATGGCTAGTCGATGATCATGCTCTTGAGTCCCCACTCGGAAAACTAGAGATATATCAAGAGCAGAATACTACTACTGAAGGGAAAAATCTGACGAAAATAGTGAGAAAACAGAGGAAAAACAGGGGTAAAAAACACAAGTTACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

383

Amino Acids

43.91

Weight (kDa)

9.42

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	110 - 330	4.9e-53	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	852
AccII	CGCG	1 cut(s)	204
AciI	CCGC	4 cut(s)	438, 669, 720, 863
AclI	AACGTT	1 cut(s)	985
AclWI	GGATC	3 cut(s)	422, 435, 557
AcsI	RAATTY	2 cut(s)	446, 753
AcuI	CTGAAG	3 cut(s)	375, 880, 1101
AfaI	GTAC	3 cut(s)	374, 533, 893
AfiI	CCNNNNNNNGG	1 cut(s)	884
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	4 cut(s)	469, 634, 758, 992
AjnI	CCWGG	2 cut(s)	394, 456
AluBI	AGCT	9 cut(s)	86, 273, 514, 588, 690, 727, 761, 836, 872
AluI	AGCT	9 cut(s)	86, 273, 514, 588, 690, 727, 761, 836, 872
Alw26I	GTCTC	5 cut(s)	68, 196, 242, 899, 914
AlwI	GGATC	3 cut(s)	422, 435, 557
AoxI	GGCC	2 cut(s)	392, 485
ApeKI	GCWGC	2 cut(s)	7, 690
ApoI	RAATTY	2 cut(s)	446, 753
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	7, 204
BaeGI	GKGCMC	1 cut(s)	823
BamHI	GGATCC	1 cut(s)	427
BarI	GAAGNNNNNNTAC	2 cut(s)	658, 690
BbsI	GAAGAC	2 cut(s)	363, 743
BbvI	GCAGC	2 cut(s)	19, 677
BccI	CCATC	2 cut(s)	710, 886
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	1004, 1038
BciT130I	CCWGG	2 cut(s)	396, 458
BclI	TGATCA	2 cut(s)	799, 1018
BcoDI	GTCTC	5 cut(s)	68, 196, 242, 899, 914
BfaI	CTAG	6 cut(s)	83, 318, 515, 1010, 1049, 1150
BisI	GCNGC	2 cut(s)	8, 691
BlsI	GCNGC	2 cut(s)	9, 692
Bme1390I	CCNGG	2 cut(s)	396, 458
BmiI	GGNNCC	2 cut(s)	429, 454
BmrFI	CCNGG	2 cut(s)	396, 458
BmsI	GCATC	1 cut(s)	583
BoxI	GACNNNNGTC	2 cut(s)	743, 999
BpiI	GAAGAC	2 cut(s)	363, 743
BpuEI	CTTGAG	3 cut(s)	204, 765, 1049
BsaI	GGTCTC	2 cut(s)	68, 196
BsaJI	CCNNGG	4 cut(s)	100, 456, 457, 767
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse1I	ACTGG	2 cut(s)	203, 305
BseBI	CCWGG	2 cut(s)	396, 458
BseDI	CCNNGG	4 cut(s)	100, 456, 457, 767
BseGI	GGATG	2 cut(s)	66, 613
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseNI	ACTGG	2 cut(s)	203, 305
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	2 cut(s)	19, 677
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	394, 487
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	1018
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	5 cut(s)	68, 196, 242, 899, 914
BsmFI	GGGAC	1 cut(s)	1018
BsnI	GGCC	2 cut(s)	394, 487
Bso31I	GGTCTC	2 cut(s)	68, 196
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp1407I	TGTACA	2 cut(s)	372, 531
Bsp143I	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
BspACI	CCGC	4 cut(s)	438, 669, 720, 863
BspANI	GGCC	2 cut(s)	394, 487
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	429, 454
BspPI	GGATC	3 cut(s)	422, 435, 557
BspTNI	GGTCTC	2 cut(s)	68, 196
BsrGI	TGTACA	2 cut(s)	372, 531
BsrI	ACTGG	2 cut(s)	203, 305
BssECI	CCNNGG	4 cut(s)	100, 456, 457, 767
BssMI	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	396, 458
Bst4CI	ACNGT	4 cut(s)	35, 56, 62, 253
BstAUI	TGTACA	2 cut(s)	372, 531
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	2 cut(s)	240, 659
BstF5I	GGATG	2 cut(s)	66, 613
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	7, 204
BstKTI	GATC	6 cut(s)	258, 351, 430, 565, 802, 1021
BstMAI	GTCTC	5 cut(s)	68, 196, 242, 899, 914
BstMBI	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
BstNI	CCWGG	2 cut(s)	396, 458
BstNSI	RCATGY	1 cut(s)	938
BstPAI	GACNNNNGTC	2 cut(s)	743, 999
BstSCI	CCNGG	2 cut(s)	394, 456
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	19, 677
BstV2I	GAAGAC	2 cut(s)	363, 743
BstX2I	RGATCY	2 cut(s)	427, 562
BstYI	RGATCY	2 cut(s)	427, 562
BsuRI	GGCC	2 cut(s)	394, 487
BtsCI	GGATG	2 cut(s)	66, 613
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	807
CfoI	GCGC	2 cut(s)	7, 204
Csp6I	GTAC	3 cut(s)	373, 532, 892
CviQI	GTAC	3 cut(s)	373, 532, 892
DdeI	CTNAG	2 cut(s)	240, 659
DpnI	GATC	6 cut(s)	257, 350, 429, 564, 801, 1020
DpnII	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
EciI	GGCGGA	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	767
Eco31I	GGTCTC	2 cut(s)	68, 196
Eco57I	CTGAAG	3 cut(s)	375, 880, 1101
EcoRII	CCWGG	2 cut(s)	394, 456
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	767
FaqI	GGGAC	1 cut(s)	1018
FbaI	TGATCA	2 cut(s)	799, 1018
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	2 cut(s)	8, 691
FokI	GGATG	2 cut(s)	53, 620
Fsp4HI	GCNGC	2 cut(s)	8, 691
FspBI	CTAG	6 cut(s)	83, 318, 515, 1010, 1049, 1150
GlaI	GCGC	2 cut(s)	6, 203
GluI	GCNGC	2 cut(s)	8, 691
HaeIII	GGCC	2 cut(s)	394, 487
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	2 cut(s)	7, 204
Hin6I	GCGC	2 cut(s)	5, 202
HinP1I	GCGC	2 cut(s)	5, 202
HincII	GTYRAC	2 cut(s)	382, 916
HindII	GTYRAC	2 cut(s)	382, 916
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	2 cut(s)	634, 1031
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	1 cut(s)	419
Hpy166II	GTNNAC	4 cut(s)	382, 853, 916, 946
Hpy188I	TCNGA	5 cut(s)	196, 474, 483, 1043, 1095
Hpy188III	TCNNGA	7 cut(s)	318, 332, 882, 898, 992, 1028, 1061
Hpy8I	GTNNAC	4 cut(s)	382, 853, 916, 946
HpyAV	CCTTC	4 cut(s)	83, 89, 183, 1076
HpyCH4III	ACNGT	4 cut(s)	35, 56, 62, 253
HpyCH4IV	ACGT	2 cut(s)	19, 985
HpyCH4V	TGCA	2 cut(s)	596, 693
HpyF3I	CTNAG	2 cut(s)	240, 659
HpySE526I	ACGT	2 cut(s)	19, 985
HspAI	GCGC	2 cut(s)	5, 202
Ksp22I	TGATCA	2 cut(s)	799, 1018
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	2 cut(s)	19, 677
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	6 cut(s)	83, 318, 515, 1010, 1049, 1150
MaeII	ACGT	2 cut(s)	19, 985
MaeIII	GTNAC	6 cut(s)	35, 56, 518, 673, 965, 1143
MalI	GATC	6 cut(s)	257, 350, 429, 564, 801, 1020
MboI	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
MboII	GAAGA	9 cut(s)	120, 150, 153, 168, 171, 368, 457, 748, 988
MflI	RGATCY	2 cut(s)	427, 562
MhlI	GDGCHC	1 cut(s)	823
MluCI	AATT	2 cut(s)	446, 753
MlyI	GAGTC	1 cut(s)	1040
MmeI	TCCRAC	2 cut(s)	219, 405
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	6 cut(s)	228, 294, 500, 624, 813, 915
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	396, 458
MvaI	CCWGG	2 cut(s)	396, 458
MvnI	CGCG	1 cut(s)	204
NdeII	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
NlaIV	GGNNCC	2 cut(s)	429, 454
NmuCI	GTSAC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	938
PasI	CCCWGGG	1 cut(s)	457
PciI	ACATGT	1 cut(s)	934
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	634
PkrI	GCNGC	2 cut(s)	9, 692
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PscI	ACATGT	1 cut(s)	934
PshAI	GACNNNNGTC	2 cut(s)	743, 999
Psp1406I	AACGTT	1 cut(s)	985
Psp6I	CCWGG	2 cut(s)	394, 456
PspGI	CCWGG	2 cut(s)	394, 456
PspN4I	GGNNCC	2 cut(s)	429, 454
PsuI	RGATCY	2 cut(s)	427, 562
RsaI	GTAC	3 cut(s)	374, 533, 893
RsaNI	GTAC	3 cut(s)	373, 532, 892
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	6 cut(s)	228, 294, 500, 624, 813, 915
SatI	GCNGC	2 cut(s)	8, 691
Sau3AI	GATC	6 cut(s)	255, 348, 427, 562, 799, 1018
SchI	GAGTC	1 cut(s)	1040
ScrFI	CCNGG	2 cut(s)	396, 458
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	3 cut(s)	219, 780, 1028
SmoI	CTYRAG	3 cut(s)	219, 780, 1028
Sse9I	AATT	2 cut(s)	446, 753
SsiI	CCGC	4 cut(s)	438, 669, 720, 863
SspMI	CTAG	6 cut(s)	83, 318, 515, 1010, 1049, 1150
StyD4I	CCNGG	2 cut(s)	394, 456
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	4 cut(s)	35, 56, 62, 253
TaiI	ACGT	2 cut(s)	22, 988
TaqI	TCGA	3 cut(s)	664, 747, 1014
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	446, 753
TatI	WGTACW	3 cut(s)	372, 531, 891
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	6 cut(s)	228, 294, 500, 624, 813, 915
Tru9I	TTAA	6 cut(s)	228, 294, 500, 624, 813, 915
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	7, 690
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	4 cut(s)	127, 592, 749, 995
TspRI	CASTG	1 cut(s)	718
XapI	RAATTY	2 cut(s)	446, 753
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	6 cut(s)	83, 318, 515, 1010, 1049, 1150
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.