Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Forward (+)

11045585 .. 11047812

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCCTCCTTCTTGTACCAAAGACCAATCCACAACCCACTTTCGGATCCGTACCCGATTTCCCCGCGCTCCTCCTCCAATGCCCAAAAACCCTACTCAATCTTCAGCCCCACGACCCTCCTGGTCCTCCTCTCGCTCCTGGTGGTGATGGGCGTCTTCTTCCCCTGGGTGGGCATGCGGGAGAGCCTCTTCTCGGACACCACCAGGCCCTCGACCGCCAAGTGGCGGGACTACACGTTGGCTCAGGCGGCCGAGTTTGTGGCCCGGAACGGGACGGTGATTGTTTGCGCCGTGAGCCAGCCGTACTTGCCGTTTTTGAACAACTGGTTGATCAGCATTACCAGGCAGAAGCACCAGGACAAGGTGCTTGTGATTGCTGAAGACTATGCCACGCTTTATAAGGTCAATGAGCGGTGGCCTGGCCACGCCGTGCTGGTTCCACCTGCGCCGGATGCTCAGACTGCCCATAAGTTTGGTTCTCAGGGATTCTTCAACTTTACTTCCCGAAGGCCGCGACACCTATTGCAGATTTTGGAGCTTGGATACAATGTTATGTACAATGATGTTGATATGGTGTGGTTGGCTGATCCATTTCCCTATTTCGAAGGAAACCATGATGTGTACTTCACAGATGACATGACCCCAGTCAAACCTCTGAACCACTCTCATGATCTGCCACCTCCAGGAAAGAAAGGACGCACTTATATATGCAGCTGTATGATTTTTCTACGTCCAACCAGCGGAGCAAAGCTAGTTATGAAGAAGTGGATCGAGGAACTTAAAGATCAACCATGGTCCAGAGAGAAAAAGGCAAATGATCAACCTGCTTTTAACTGGGCATTAGACAAACTTGTTAACCAAGTGGATCTCTACCTGCTGCCACAGGCAGCATTTCCAACTGGAGGATTATACTTTAAGAACAAGACGTGGGTGCGAGAAACTAAAGGGATGCATGTTATAATTCACAATAATTATATCCTGGGTTTTGAGAAGAAGATAAAACGCTTCCATGATTATGATCTATGGCTGGTCGATGATCACGCGGATGAGTCTCCTCTTGGGAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

357

Amino Acids

41.05

Weight (kDa)

8.89

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	118 - 336	5.2e-47	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	399, 959
AarI	CACCTGC	1 cut(s)	451
Acc36I	ACCTGC	3 cut(s)	451, 832, 882
AccBSI	CCGCTC	1 cut(s)	412
AccII	CGCG	3 cut(s)	67, 514, 1043
AciI	CCGC	9 cut(s)	65, 178, 216, 226, 248, 412, 512, 741, 1043
AclWI	GGATC	5 cut(s)	41, 54, 581, 776, 873
AcoI	YGGCCR	2 cut(s)	249, 421
AcuI	CTGAAG	2 cut(s)	88, 399
AcyI	GRCGYC	1 cut(s)	153
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	5 cut(s)	17, 53, 305, 557, 623
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	319, 493
AjiI	CACGTC	1 cut(s)	927
AjnI	CCWGG	9 cut(s)	120, 138, 164, 203, 341, 354, 418, 682, 978
AluBI	AGCT	3 cut(s)	538, 714, 751
AluI	AGCT	3 cut(s)	538, 714, 751
Alw26I	GTCTC	1 cut(s)	1056
AlwI	GGATC	5 cut(s)	41, 54, 581, 776, 873
AoxI	GGCC	6 cut(s)	206, 249, 261, 416, 421, 509
ApeKI	GCWGC	3 cut(s)	711, 877, 887
AspLEI	GCGC	3 cut(s)	69, 290, 448
AspS9I	GGNCC	4 cut(s)	124, 207, 262, 795
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	157, 289
AsuII	TTCGAA	1 cut(s)	603
AvaII	GGWCC	2 cut(s)	124, 795
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	148, 387
BbvI	GCAGC	3 cut(s)	723, 864, 899
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	4 cut(s)	275, 286, 295, 413
BciT130I	CCWGG	9 cut(s)	122, 140, 166, 205, 343, 356, 420, 684, 980
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	3 cut(s)	330, 817, 1036
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	1056
BfaI	CTAG	1 cut(s)	752
BfuAI	ACCTGC	3 cut(s)	451, 832, 882
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	5 cut(s)	249, 512, 712, 878, 888
BlsI	GCNGC	5 cut(s)	250, 513, 713, 879, 889
Bme18I	GGWCC	2 cut(s)	124, 795
BmgBI	CACGTC	1 cut(s)	927
BmgT120I	GGNCC	4 cut(s)	124, 207, 262, 795
BmiI	GGNNCC	2 cut(s)	48, 438
BmrI	ACTGGG	2 cut(s)	638, 844
BmsI	GCATC	2 cut(s)	442, 939
BmuI	ACTGGG	2 cut(s)	638, 844
BoxI	GACNNNNGTC	1 cut(s)	644
BpiI	GAAGAC	2 cut(s)	148, 387
BpmI	CTGGAG	2 cut(s)	666, 921
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	164, 165, 791, 979
Bse1I	ACTGG	4 cut(s)	329, 644, 839, 904
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	9 cut(s)	122, 140, 166, 205, 343, 356, 420, 684, 980
BseDI	CCNNGG	4 cut(s)	164, 165, 791, 979
BseGI	GGATG	3 cut(s)	457, 954, 1051
BseJI	GATNNNNATC	1 cut(s)	1017
BseMII	CTCAG	3 cut(s)	257, 470, 494
BseNI	ACTGG	4 cut(s)	329, 644, 839, 904
BseRI	GAGGAG	4 cut(s)	61, 64, 119, 1044
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	723, 864, 899
Bsh1236I	CGCG	3 cut(s)	67, 514, 1043
Bsh1285I	CGRYCG	2 cut(s)	216, 252
BshFI	GGCC	6 cut(s)	208, 251, 263, 418, 423, 511
BsiEI	CGRYCG	2 cut(s)	216, 252
BsiSI	CCGG	2 cut(s)	265, 449
BslFI	GGGAC	2 cut(s)	242, 286
BsmAI	GTCTC	1 cut(s)	1056
BsmFI	GGGAC	2 cut(s)	242, 286
BsnI	GGCC	6 cut(s)	208, 251, 263, 418, 423, 511
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1407I	TGTACA	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	9 cut(s)	65, 178, 216, 226, 248, 412, 512, 741, 1043
BspANI	GGCC	6 cut(s)	208, 251, 263, 418, 423, 511
BspCNI	CTCAG	3 cut(s)	256, 469, 493
BspFNI	CGCG	3 cut(s)	67, 514, 1043
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	48, 438
BspMI	ACCTGC	3 cut(s)	451, 832, 882
BspPI	GGATC	5 cut(s)	41, 54, 581, 776, 873
BspT104I	TTCGAA	1 cut(s)	603
BsrBI	CCGCTC	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	4 cut(s)	329, 644, 839, 904
BssECI	CCNNGG	4 cut(s)	164, 165, 791, 979
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	9 cut(s)	122, 140, 166, 205, 343, 356, 420, 684, 980
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	176, 299
BstDEI	CTNAG	3 cut(s)	243, 456, 480
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	457, 954, 1051
BstFNI	CGCG	3 cut(s)	67, 514, 1043
BstHHI	GCGC	3 cut(s)	69, 290, 448
BstMAI	GTCTC	1 cut(s)	1056
BstMCI	CGRYCG	2 cut(s)	216, 252
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 294, 307, 452, 461
BstNI	CCWGG	9 cut(s)	122, 140, 166, 205, 343, 356, 420, 684, 980
BstNSI	RCATGY	2 cut(s)	178, 956
BstPAI	GACNNNNGTC	1 cut(s)	644
BstUI	CGCG	3 cut(s)	67, 514, 1043
BstV1I	GCAGC	3 cut(s)	723, 864, 899
BstV2I	GAAGAC	2 cut(s)	148, 387
BstX2I	RGATCY	2 cut(s)	46, 865
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	2 cut(s)	46, 865
BstZI	CGGCCG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	6 cut(s)	208, 251, 263, 418, 423, 511
BtgI	CCRYGG	1 cut(s)	791
BtrI	CACGTC	1 cut(s)	927
BtsCI	GGATG	3 cut(s)	457, 954, 1051
BveI	ACCTGC	3 cut(s)	451, 832, 882
Cac8I	GCNNGC	2 cut(s)	176, 299
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	3 cut(s)	69, 290, 448
Cfr13I	GGNCC	4 cut(s)	124, 207, 262, 795
CseI	GACGC	2 cut(s)	142, 705
Csp6I	GTAC	5 cut(s)	16, 52, 304, 556, 622
CviAII	CATG	7 cut(s)	175, 614, 637, 668, 792, 953, 1010
CviQI	GTAC	5 cut(s)	16, 52, 304, 556, 622
DdeI	CTNAG	3 cut(s)	243, 456, 480
DraIII	CACNNNGTG	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	249, 421
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	124, 795
Eco52I	CGGCCG	1 cut(s)	249
Eco57I	CTGAAG	2 cut(s)	88, 399
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	9 cut(s)	120, 138, 164, 203, 341, 354, 418, 682, 978
EcoT14I	CCWWGG	1 cut(s)	791
EcoT22I	ATGCAT	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	7 cut(s)	178, 617, 640, 671, 795, 956, 1013
FaqI	GGGAC	2 cut(s)	242, 286
FatI	CATG	7 cut(s)	174, 613, 636, 667, 791, 952, 1009
FauI	CCCGC	3 cut(s)	72, 171, 219
FbaI	TGATCA	3 cut(s)	330, 817, 1036
Fnu4HI	GCNGC	5 cut(s)	249, 512, 712, 878, 888
FokI	GGATG	3 cut(s)	464, 961, 1058
Fsp4HI	GCNGC	5 cut(s)	249, 512, 712, 878, 888
FspBI	CTAG	1 cut(s)	752
GlaI	GCGC	3 cut(s)	68, 289, 447
GluI	GCNGC	5 cut(s)	249, 512, 712, 878, 888
GsuI	CTGGAG	2 cut(s)	666, 921
HaeIII	GGCC	6 cut(s)	208, 251, 263, 418, 423, 511
HapII	CCGG	2 cut(s)	265, 449
HgaI	GACGC	2 cut(s)	142, 705
HhaI	GCGC	3 cut(s)	69, 290, 448
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	178, 617, 640, 671, 795, 956, 1013
Hin6I	GCGC	3 cut(s)	67, 288, 446
HinP1I	GCGC	3 cut(s)	67, 288, 446
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	2 cut(s)	486, 1049
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	2 cut(s)	265, 449
HphI	GGTGA	2 cut(s)	157, 289
Hpy166II	GTNNAC	2 cut(s)	622, 856
Hpy188I	TCNGA	4 cut(s)	46, 196, 459, 657
Hpy188III	TCNNGA	3 cut(s)	504, 668, 798
Hpy8I	GTNNAC	2 cut(s)	622, 856
HpyAV	CCTTC	3 cut(s)	19, 501, 599
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	3 cut(s)	236, 730, 926
HpyCH4V	TGCA	3 cut(s)	526, 711, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 294, 307, 452, 461
HpyF3I	CTNAG	3 cut(s)	243, 456, 480
HpySE526I	ACGT	3 cut(s)	236, 730, 926
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	178, 617, 640, 671, 795, 956, 1013
HspAI	GCGC	3 cut(s)	67, 288, 446
Ksp22I	TGATCA	3 cut(s)	330, 817, 1036
KspAI	GTTAAC	1 cut(s)	856
LmnI	GCTCC	4 cut(s)	74, 141, 535, 743
Lsp1109I	GCAGC	3 cut(s)	723, 864, 899
LweI	GCATC	2 cut(s)	442, 939
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	3 cut(s)	236, 730, 926
MbiI	CCGCTC	1 cut(s)	412
MboII	GAAGA	9 cut(s)	94, 148, 151, 181, 392, 481, 772, 1003, 1006
MflI	RGATCY	2 cut(s)	46, 865
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	2 cut(s)	960, 970
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	1058
MmeI	TCCRAC	2 cut(s)	758, 920
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	954
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	4 cut(s)	780, 831, 855, 915
MslI	CAYNNNNRTG	3 cut(s)	666, 1014, 1044
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	714, 741
MspI	CCGG	2 cut(s)	265, 449
MvaI	CCWGG	9 cut(s)	122, 140, 166, 205, 343, 356, 420, 684, 980
MvnI	CGCG	3 cut(s)	67, 514, 1043
MwoI	GCNNNNNNNGC	5 cut(s)	248, 294, 307, 452, 461
NciI	CCSGG	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	791
NlaIII	CATG	7 cut(s)	178, 617, 640, 671, 795, 956, 1013
NlaIV	GGNNCC	2 cut(s)	48, 438
NmeAIII	GCCGAG	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	954
NspI	RCATGY	2 cut(s)	178, 956
NspV	TTCGAA	1 cut(s)	603
PaeI	GCATGC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	667
PaqCI	CACCTGC	1 cut(s)	451
PasI	CCCWGGG	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	486
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	5 cut(s)	250, 513, 713, 879, 889
PleI	GAGTC	1 cut(s)	1057
PpsI	GAGTC	1 cut(s)	1057
PshAI	GACNNNNGTC	1 cut(s)	644
PsiI	TTATAA	2 cut(s)	399, 959
Psp6I	CCWGG	9 cut(s)	120, 138, 164, 203, 341, 354, 418, 682, 978
PspGI	CCWGG	9 cut(s)	120, 138, 164, 203, 341, 354, 418, 682, 978
PspN4I	GGNNCC	2 cut(s)	48, 438
PspPI	GGNCC	4 cut(s)	124, 207, 262, 795
PsuI	RGATCY	2 cut(s)	46, 865
PvuII	CAGCTG	1 cut(s)	714
RsaI	GTAC	5 cut(s)	17, 53, 305, 557, 623
RsaNI	GTAC	5 cut(s)	16, 52, 304, 556, 622
RseI	CAYNNNNRTG	3 cut(s)	666, 1014, 1044
SaqAI	TTAA	4 cut(s)	780, 831, 855, 915
SatI	GCNGC	5 cut(s)	249, 512, 712, 878, 888
Sau96I	GGNCC	4 cut(s)	124, 207, 262, 795
SchI	GAGTC	1 cut(s)	1058
SfaNI	GCATC	2 cut(s)	442, 939
SfuI	TTCGAA	1 cut(s)	603
SinI	GGWCC	2 cut(s)	124, 795
SmiMI	CAYNNNNRTG	3 cut(s)	666, 1014, 1044
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	2 cut(s)	960, 970
SsiI	CCGC	9 cut(s)	65, 178, 216, 226, 248, 412, 512, 741, 1043
SspMI	CTAG	1 cut(s)	752
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	3 cut(s)	239, 733, 929
TaqI	TCGA	4 cut(s)	212, 603, 771, 1032
TasI	AATT	2 cut(s)	960, 970
TatI	WGTACW	2 cut(s)	555, 621
TauI	GCSGC	2 cut(s)	251, 514
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	4 cut(s)	780, 831, 855, 915
Tru9I	TTAA	4 cut(s)	780, 831, 855, 915
TseI	GCWGC	3 cut(s)	711, 877, 887
TspDTI	ATGAA	1 cut(s)	773
TspGWI	ACGGA	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	124, 795
XceI	RCATGY	2 cut(s)	178, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	752
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.