Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007855.1

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Reverse (-)

52194 .. 53885

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007855.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgcaagagggtttgttctccatcactaacaggtcctcactcaaatggaggagttacacattggcccaagctgcggcctttgtggcccaaaatgggaccttgattgtttgtgcggtgagtgagccttacttgccctttttgaacaactggttgattagcattgcgaggcagaagcaccaggacaaggtgcttgtgattgctgaggactatgggacgctttataaggtcaatgagaggtggccaggccacgccgtgcttattccgccggctcttgatgctcaggctgcccacaagttcggttctcagggattcttcaactttacttccagaaggccacgccacctcttaaacattttggagctcgggtacagtgtgatgtacaatgacgttgatatggtgtggttggctgatccctttccttatttggtagggaatcatgatgtgtacttcacagatgatatgactccagtcaaacctctgaaccattctcatgatttgccacctccaggtaagaaaggacgcacttacatatgcagctgtatgatcttcttacgtcctacaagcggtgcaaaattaattatgaagaagtggatagaggaaatgcagcaggagccctggtccagggcaaagaaagcaaacgatcaacctgcttttaactgggcattagacaaaaatgctgcacaggcggatctctacttgctgtcgcaagcagcattcccaactggaggattatacttcaagaacaaaacatgggtaaaggaaactaatgggatgcatgttataatccacaacaattatattttaggttttgagaagaagatcaggcgcttccatgattatggtctctggttggtagatgatcatgcccatgagtctcccctcgggagaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

297

Amino Acids

34.04

Weight (kDa)

8.95

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	222, 782
Acc36I	ACCTGC	1 cut(s)	655
AciI	CCGC	5 cut(s)	74, 113, 263, 564, 686
AclWI	GGATC	2 cut(s)	404, 696
AcoI	YGGCCR	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	253
AfaI	GTAC	3 cut(s)	368, 380, 446
AfiI	CCNNNNNNNGG	7 cut(s)	73, 93, 184, 506, 563, 621, 725
AgsI	TTSAA	3 cut(s)	142, 316, 739
AjnI	CCWGG	5 cut(s)	177, 241, 505, 614, 620
AluBI	AGCT	3 cut(s)	71, 361, 537
AluI	AGCT	3 cut(s)	71, 361, 537
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	848, 879
AlwI	GGATC	2 cut(s)	404, 696
Ama87I	CYCGRG	2 cut(s)	362, 881
AoxI	GGCC	6 cut(s)	63, 75, 84, 239, 244, 332
ApeKI	GCWGC	6 cut(s)	71, 284, 534, 604, 677, 710
AseI	ATTAAT	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	5 cut(s)	33, 64, 85, 96, 618
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	2 cut(s)	362, 881
AvaII	GGWCC	3 cut(s)	33, 96, 618
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	363, 615
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	58, 271, 546, 616, 664, 722
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	5 cut(s)	179, 243, 507, 616, 622
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	848, 879
BfoI	RGCGCY	1 cut(s)	829
BfuAI	ACCTGC	1 cut(s)	655
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	7 cut(s)	72, 75, 285, 535, 605, 678, 711
BlsI	GCNGC	7 cut(s)	73, 76, 286, 536, 606, 679, 712
Bme1390I	CCNGG	5 cut(s)	179, 243, 507, 616, 622
Bme18I	GGWCC	3 cut(s)	33, 96, 618
BmeT110I	CYCGRG	2 cut(s)	362, 881
BmgT120I	GGNCC	5 cut(s)	33, 64, 85, 96, 618
BmiI	GGNNCC	2 cut(s)	97, 612
BmrFI	CCNGG	5 cut(s)	179, 243, 507, 616, 622
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	265, 762
BmuI	ACTGGG	1 cut(s)	667
BoxI	GACNNNNGTC	1 cut(s)	467
BpmI	CTGGAG	3 cut(s)	450, 489, 744
Bpu10I	CCTNAGC	2 cut(s)	201, 279
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	614, 621, 880
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 602, 632
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 93, 184, 506, 563, 621, 725
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	4 cut(s)	152, 467, 662, 727
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	5 cut(s)	179, 243, 507, 616, 622
BseDI	CCNNGG	3 cut(s)	614, 621, 880
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	7 cut(s)	73, 93, 184, 506, 563, 621, 725
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	192, 293, 317
BseNI	ACTGG	4 cut(s)	152, 467, 662, 727
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	6 cut(s)	58, 271, 546, 616, 664, 722
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	6 cut(s)	65, 77, 86, 241, 246, 334
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	2 cut(s)	362, 881
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	109, 226
BslI	CCNNNNNNNGG	7 cut(s)	73, 93, 184, 506, 563, 621, 725
BsmAI	GTCTC	2 cut(s)	848, 879
BsmFI	GGGAC	2 cut(s)	109, 226
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	6 cut(s)	65, 77, 86, 241, 246, 334
Bso31I	GGTCTC	1 cut(s)	848
BsoBI	CYCGRG	2 cut(s)	362, 881
Bsp1286I	GDGCHC	2 cut(s)	363, 615
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
BspACI	CCGC	5 cut(s)	74, 113, 263, 564, 686
BspANI	GGCC	6 cut(s)	65, 77, 86, 241, 246, 334
BspCNI	CTCAG	3 cut(s)	193, 292, 316
BspHI	TCATGA	2 cut(s)	436, 490
BspLI	GGNNCC	2 cut(s)	97, 612
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	2 cut(s)	404, 696
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	4 cut(s)	152, 467, 662, 727
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	614, 621, 880
BssMI	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
Bst2UI	CCWGG	5 cut(s)	179, 243, 507, 616, 622
Bst4CI	ACNGT	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	267, 708
BstDEI	CTNAG	3 cut(s)	201, 279, 303
BstENI	CCTNNNNNAGG	1 cut(s)	619
BstF5I	GGATG	1 cut(s)	777
BstH2I	RGCGCY	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	6 cut(s)	412, 546, 643, 691, 822, 862
BstMAI	GTCTC	2 cut(s)	848, 879
BstMBI	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 83, 130, 262, 275, 284, 610, 632, 683
BstNI	CCWGG	5 cut(s)	179, 243, 507, 616, 622
BstNSI	RCATGY	1 cut(s)	779
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	5 cut(s)	177, 241, 505, 614, 620
BstV1I	GCAGC	6 cut(s)	58, 271, 546, 616, 664, 722
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	6 cut(s)	65, 77, 86, 241, 246, 334
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	2 cut(s)	267, 708
CciI	TCATGA	2 cut(s)	436, 490
CfoI	GCGC	1 cut(s)	828
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	5 cut(s)	33, 64, 85, 96, 618
CseI	GACGC	2 cut(s)	223, 528
Csp6I	GTAC	3 cut(s)	367, 379, 445
CviAII	CATG	7 cut(s)	437, 491, 750, 776, 833, 863, 869
CviQI	GTAC	3 cut(s)	367, 379, 445
DdeI	CTNAG	3 cut(s)	201, 279, 303
DpnI	GATC	6 cut(s)	411, 545, 642, 690, 821, 861
DpnII	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
DraIII	CACNNNGTG	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	239
EciI	GGCGGA	2 cut(s)	252, 701
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	2 cut(s)	363, 615
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	3 cut(s)	33, 96, 618
Eco53kI	GAGCTC	1 cut(s)	361
Eco88I	CYCGRG	2 cut(s)	362, 881
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	619
EcoO109I	RGGNCCY	2 cut(s)	33, 96
EcoRII	CCWGG	5 cut(s)	177, 241, 505, 614, 620
EcoT22I	ATGCAT	1 cut(s)	777
EcoT38I	GRGCYC	2 cut(s)	363, 615
FaeI	CATG	7 cut(s)	440, 494, 753, 779, 836, 866, 872
FaqI	GGGAC	2 cut(s)	109, 226
FatI	CATG	7 cut(s)	436, 490, 749, 775, 832, 862, 868
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	7 cut(s)	72, 75, 285, 535, 605, 678, 711
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	2 cut(s)	363, 615
Fsp4HI	GCNGC	7 cut(s)	72, 75, 285, 535, 605, 678, 711
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	7 cut(s)	72, 75, 285, 535, 605, 678, 711
GsuI	CTGGAG	3 cut(s)	450, 489, 744
HaeII	RGCGCY	1 cut(s)	829
HaeIII	GGCC	6 cut(s)	65, 77, 86, 241, 246, 334
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	2 cut(s)	223, 528
HhaI	GCGC	1 cut(s)	828
Hin1II	CATG	7 cut(s)	440, 494, 753, 779, 836, 866, 872
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HinfI	GANTC	4 cut(s)	309, 433, 463, 872
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	6 cut(s)	272, 327, 437, 491, 739, 883
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	387, 553
HpyCH4V	TGCA	6 cut(s)	4, 534, 569, 604, 680, 775
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 83, 130, 262, 275, 284, 610, 632, 683
HpyF3I	CTNAG	3 cut(s)	201, 279, 303
HpySE526I	ACGT	2 cut(s)	387, 553
Hsp92II	CATG	7 cut(s)	440, 494, 753, 779, 836, 866, 872
HspAI	GCGC	1 cut(s)	826
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
LmnI	GCTCC	2 cut(s)	358, 610
Lsp1109I	GCAGC	6 cut(s)	58, 271, 546, 616, 664, 722
LweI	GCATC	2 cut(s)	265, 762
MaeII	ACGT	2 cut(s)	387, 553
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	6 cut(s)	411, 545, 642, 690, 821, 861
MboI	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
MboII	GAAGA	5 cut(s)	304, 538, 595, 826, 829
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	2 cut(s)	363, 615
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	3 cut(s)	572, 576, 793
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	457, 881
Mox20I	TGGCCA	1 cut(s)	241
Mph1103I	ATGCAT	1 cut(s)	777
MroNI	GCCGGC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	3 cut(s)	347, 575, 654
MslI	CAYNNNNRTG	4 cut(s)	43, 489, 837, 867
Msp20I	TGGCCA	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	537
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	5 cut(s)	179, 243, 507, 616, 622
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	5 cut(s)	179, 243, 507, 616, 622
MwoI	GCNNNNNNNGC	9 cut(s)	71, 83, 130, 262, 275, 284, 610, 632, 683
NaeI	GCCGGC	1 cut(s)	267
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	7 cut(s)	440, 494, 753, 779, 836, 866, 872
NlaIV	GGNNCC	2 cut(s)	97, 612
NsiI	ATGCAT	1 cut(s)	777
NspI	RCATGY	1 cut(s)	779
PagI	TCATGA	2 cut(s)	436, 490
PctI	GAATGC	1 cut(s)	713
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	309, 433
PkrI	GCNGC	7 cut(s)	73, 76, 286, 536, 606, 679, 712
PleI	GAGTC	2 cut(s)	457, 880
PpsI	GAGTC	2 cut(s)	457, 880
PpuMI	RGGWCCY	2 cut(s)	33, 96
PshAI	GACNNNNGTC	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	575
PsiI	TTATAA	2 cut(s)	222, 782
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	2 cut(s)	33, 96
Psp6I	CCWGG	5 cut(s)	177, 241, 505, 614, 620
PspGI	CCWGG	5 cut(s)	177, 241, 505, 614, 620
PspN4I	GGNNCC	2 cut(s)	97, 612
PspPI	GGNCC	5 cut(s)	33, 64, 85, 96, 618
PspPPI	RGGWCCY	2 cut(s)	33, 96
PsuI	RGATCY	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	537
RsaI	GTAC	3 cut(s)	368, 380, 446
RsaNI	GTAC	3 cut(s)	367, 379, 445
RseI	CAYNNNNRTG	4 cut(s)	43, 489, 837, 867
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	347, 575, 654
SatI	GCNGC	7 cut(s)	72, 75, 285, 535, 605, 678, 711
Sau3AI	GATC	6 cut(s)	409, 543, 640, 688, 819, 859
Sau96I	GGNCC	5 cut(s)	33, 64, 85, 96, 618
SchI	GAGTC	2 cut(s)	457, 881
ScrFI	CCNGG	5 cut(s)	179, 243, 507, 616, 622
SduI	GDGCHC	2 cut(s)	363, 615
SfaNI	GCATC	2 cut(s)	265, 762
SfiI	GGCCNNNNNGGCC	1 cut(s)	83
SinI	GGWCC	3 cut(s)	33, 96, 618
SmiMI	CAYNNNNRTG	4 cut(s)	43, 489, 837, 867
Sse9I	AATT	3 cut(s)	572, 576, 793
SsiI	CCGC	5 cut(s)	74, 113, 263, 564, 686
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	5 cut(s)	177, 241, 505, 614, 620
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	390, 556
TasI	AATT	3 cut(s)	572, 576, 793
TatI	WGTACW	2 cut(s)	378, 444
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	309, 433
Tru1I	TTAA	3 cut(s)	347, 575, 654
Tru9I	TTAA	3 cut(s)	347, 575, 654
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	6 cut(s)	71, 284, 534, 604, 677, 710
TspDTI	ATGAA	1 cut(s)	596
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	33, 96, 618
VspI	ATTAAT	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	619
XceI	RCATGY	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.