Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Reverse (-)

513053 .. 515853

Gene Structure 2801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCGCAGCAAAAGTTCCTTCACCAGCGACCAATCCAAAACCCATTCACAAACCCATTCTCTTCTTCTCCTCTTTCCACTTCTTCAATCTCAAATCGTCCAATCTCTCTACTCAGCCGCAACGGTCTCCTCCTCCTTCTCGCTCTCCTCGTTATCCTCGGCGTATTCTTACCCTGGGCAGGATCTCCTTTATTCCCGTCTCCAAACAAACTCTCTCCTTCTCAATCCAAATGGCGCGACTATTCCCTCCCTCAAGCTGTCAAATTCGTAGCTAAGAACGGGACTGTGATCGTATGCGCCGTTAGCTATCCTTACTTGCCGTTTCTCAACAATTGGTTGATTAGTGTTTCTAGACAGAAGCATCAGGATCAAGTTCTCGTCATCGCTGAGGATTACGCTACTCTCTACAAAGTTAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGCTCGATTCTCAGACCGCTCACAAATTCGGTTCTCAGGGATTCTTCAATTTCACAGCACGGAGGCCGCAACATCTCTTGGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGCAATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAAGGAAGGACTTATATTTGTAGCTGTATGATTTTCTTGCGTCCCACTAATGGCGCAAAACTTCTCATGAAGAAATGGATCGAGGAGCTTGAAACGCAACCTTGGTCCAGAGCTAAGAAAGCAAATGATCAGCCTGGTTTTAACTGGGCACTTAACAAAACAGCTAATCAGGTGGATATGTACTTGCTTTCGCAGGCAGCTTTCCCAACAGGAGGATTGTATTTCAAGAACAAAACATGGGTTAAAGAAACAAAGGGAAAACATGCGATAATCCACAATAACTACATAGTCGGTTTTGAGAAGAAGATCAAACGTTTCCGTGACTTTAATCTATGGCTAGTCGATGATCATGCTTCCGAGTCTCCTTTAGGGAAATTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

360

Amino Acids

41.12

Weight (kDa)

9.38

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	121 - 339	1.6e-50	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	473
AccII	CGCG	1 cut(s)	237
AciI	CCGC	3 cut(s)	118, 471, 521
AclI	AACGTT	1 cut(s)	1012
AclWI	GGATC	5 cut(s)	190, 375, 590, 675, 785
AcsI	RAATTY	3 cut(s)	263, 479, 537
AfaI	GTAC	2 cut(s)	566, 881
AfiI	CCNNNNNNNGG	4 cut(s)	179, 692, 749, 911
AgsI	TTSAA	4 cut(s)	87, 502, 791, 925
AjnI	CCWGG	3 cut(s)	173, 427, 832
AluBI	AGCT	8 cut(s)	257, 272, 306, 723, 787, 812, 863, 899
AluI	AGCT	8 cut(s)	257, 272, 306, 723, 787, 812, 863, 899
Alw26I	GTCTC	3 cut(s)	131, 204, 1065
AlwI	GGATC	5 cut(s)	190, 375, 590, 675, 785
AoxI	GGCC	2 cut(s)	425, 518
ApeKI	GCWGC	2 cut(s)	7, 896
ApoI	RAATTY	3 cut(s)	263, 479, 537
AspLEI	GCGC	5 cut(s)	7, 237, 299, 457, 755
AspS9I	GGNCC	1 cut(s)	804
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	850
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	19, 908
BceAI	ACGGC	3 cut(s)	284, 304, 422
BcgI	CGANNNNNNTGC	2 cut(s)	1031, 1065
BciT130I	CCWGG	3 cut(s)	175, 429, 834
BclI	TGATCA	2 cut(s)	826, 1045
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	3 cut(s)	131, 204, 1065
BfaI	CTAG	2 cut(s)	351, 1037
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	4 cut(s)	8, 118, 521, 897
BlsI	GCNGC	4 cut(s)	9, 119, 522, 898
Bme1390I	CCNGG	4 cut(s)	175, 429, 693, 834
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	804
BmrFI	CCNGG	4 cut(s)	175, 429, 693, 834
BmrI	ACTGGG	1 cut(s)	853
BmsI	GCATC	2 cut(s)	370, 616
BmuI	ACTGGG	1 cut(s)	853
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	157, 173, 174, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 692, 749, 911
Bse1I	ACTGG	1 cut(s)	848
BseBI	CCWGG	3 cut(s)	175, 429, 834
BseDI	CCNNGG	4 cut(s)	157, 173, 174, 800
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	4 cut(s)	179, 692, 749, 911
BseMII	CTCAG	4 cut(s)	127, 378, 479, 503
BseNI	ACTGG	1 cut(s)	848
BseRI	GAGGAG	5 cut(s)	60, 119, 122, 137, 797
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	2 cut(s)	19, 908
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	427, 520
BsiSI	CCGG	2 cut(s)	452, 692
BslFI	GGGAC	2 cut(s)	295, 726
BslI	CCNNNNNNNGG	4 cut(s)	179, 692, 749, 911
BsmAI	GTCTC	3 cut(s)	131, 204, 1065
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	295, 726
BsnI	GGCC	2 cut(s)	427, 520
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
BspACI	CCGC	3 cut(s)	118, 471, 521
BspANI	GGCC	2 cut(s)	427, 520
BspCNI	CTCAG	4 cut(s)	126, 379, 478, 502
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	2 cut(s)	676, 765
BspPI	GGATC	5 cut(s)	190, 375, 590, 675, 785
BspTNI	GGTCTC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	848
BssECI	CCNNGG	4 cut(s)	157, 173, 174, 800
BssMI	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
BssT1I	CCWWGG	1 cut(s)	800
Bst2UI	CCWGG	3 cut(s)	175, 429, 834
Bst4CI	ACNGT	2 cut(s)	125, 286
Bst6I	CTCTTC	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	6 cut(s)	113, 273, 387, 465, 489, 813
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	5 cut(s)	7, 237, 299, 457, 755
BstKTI	GATC	9 cut(s)	185, 291, 370, 598, 670, 780, 829, 1008, 1048
BstMAI	GTCTC	3 cut(s)	131, 204, 1065
BstMBI	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 793, 818
BstNI	CCWGG	3 cut(s)	175, 429, 834
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	4 cut(s)	173, 427, 691, 832
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	19, 908
BstX2I	RGATCY	2 cut(s)	182, 595
BstYI	RGATCY	2 cut(s)	182, 595
BsuRI	GGCC	2 cut(s)	427, 520
BtgZI	GCGATG	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	894
CciI	TCATGA	2 cut(s)	676, 765
CfoI	GCGC	5 cut(s)	7, 237, 299, 457, 755
Cfr13I	GGNCC	1 cut(s)	804
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	565, 880
CviAII	CATG	6 cut(s)	637, 677, 766, 936, 962, 1049
CviQI	GTAC	2 cut(s)	565, 880
DdeI	CTNAG	6 cut(s)	113, 273, 387, 465, 489, 813
DpnI	GATC	9 cut(s)	184, 290, 369, 597, 669, 779, 828, 1007, 1047
DpnII	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	800
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	804
EcoRII	CCWGG	3 cut(s)	173, 427, 832
EcoT14I	CCWWGG	1 cut(s)	800
ErhI	CCWWGG	1 cut(s)	800
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	6 cut(s)	640, 680, 769, 939, 965, 1052
FaqI	GGGAC	2 cut(s)	295, 726
FatI	CATG	6 cut(s)	636, 676, 765, 935, 961, 1048
FbaI	TGATCA	2 cut(s)	826, 1045
Fnu4HI	GCNGC	4 cut(s)	8, 118, 521, 897
FokI	GGATG	1 cut(s)	653
Fsp4HI	GCNGC	4 cut(s)	8, 118, 521, 897
FspBI	CTAG	2 cut(s)	351, 1037
GlaI	GCGC	5 cut(s)	6, 236, 298, 456, 754
GluI	GCNGC	4 cut(s)	8, 118, 521, 897
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	427, 520
HapII	CCGG	2 cut(s)	452, 692
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	5 cut(s)	7, 237, 299, 457, 755
Hin1II	CATG	6 cut(s)	640, 680, 769, 939, 965, 1052
Hin6I	GCGC	5 cut(s)	5, 235, 297, 455, 753
HinP1I	GCGC	5 cut(s)	5, 235, 297, 455, 753
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	461, 495, 1058
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	2 cut(s)	452, 692
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	468, 1057
Hpy188III	TCNNGA	6 cut(s)	351, 365, 677, 766, 807, 925
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	4 cut(s)	29, 146, 228, 699
HpyCH4III	ACNGT	2 cut(s)	125, 286
HpyCH4IV	ACGT	1 cut(s)	1012
HpyCH4V	TGCA	2 cut(s)	592, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 793, 818
HpyF3I	CTNAG	6 cut(s)	113, 273, 387, 465, 489, 813
HpySE526I	ACGT	1 cut(s)	1012
Hsp92II	CATG	6 cut(s)	640, 680, 769, 939, 965, 1052
HspAI	GCGC	5 cut(s)	5, 235, 297, 455, 753
Ksp22I	TGATCA	2 cut(s)	826, 1045
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	2 cut(s)	19, 908
LweI	GCATC	2 cut(s)	370, 616
MaeI	CTAG	2 cut(s)	351, 1037
MaeII	ACGT	1 cut(s)	1012
MaeIII	GTNAC	3 cut(s)	431, 551, 1019
MalI	GATC	9 cut(s)	184, 290, 369, 597, 669, 779, 828, 1007, 1047
MbiI	CCGCTC	1 cut(s)	473
MboI	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
MboII	GAAGA	7 cut(s)	54, 57, 75, 490, 781, 1012, 1015
MfeI	CAATTG	1 cut(s)	331
MflI	RGATCY	2 cut(s)	182, 595
MhlI	GDGCHC	1 cut(s)	850
MluCI	AATT	7 cut(s)	263, 331, 479, 502, 537, 654, 1073
MlyI	GAGTC	1 cut(s)	1067
MseI	TTAA	6 cut(s)	414, 657, 840, 852, 942, 1026
MslI	CAYNNNNRTG	1 cut(s)	675
MspI	CCGG	2 cut(s)	452, 692
MspR9I	CCNGG	4 cut(s)	175, 429, 693, 834
MunI	CAATTG	1 cut(s)	331
MvaI	CCWGG	3 cut(s)	175, 429, 834
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	303, 793, 818
NciI	CCSGG	1 cut(s)	693
NdeII	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
NlaIII	CATG	6 cut(s)	640, 680, 769, 939, 965, 1052
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	431, 1019
NspI	RCATGY	1 cut(s)	965
PagI	TCATGA	2 cut(s)	676, 765
PasI	CCCWGGG	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 297
PfeI	GAWTC	2 cut(s)	461, 495
PkrI	GCNGC	4 cut(s)	9, 119, 522, 898
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
Psp1406I	AACGTT	1 cut(s)	1012
Psp6I	CCWGG	3 cut(s)	173, 427, 832
PspGI	CCWGG	3 cut(s)	173, 427, 832
PspPI	GGNCC	1 cut(s)	804
PsuI	RGATCY	2 cut(s)	182, 595
RsaI	GTAC	2 cut(s)	566, 881
RsaNI	GTAC	2 cut(s)	565, 880
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	6 cut(s)	414, 657, 840, 852, 942, 1026
SatI	GCNGC	4 cut(s)	8, 118, 521, 897
Sau3AI	GATC	9 cut(s)	182, 288, 367, 595, 667, 777, 826, 1005, 1045
Sau96I	GGNCC	1 cut(s)	804
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	4 cut(s)	175, 429, 693, 834
SduI	GDGCHC	1 cut(s)	850
SfaNI	GCATC	2 cut(s)	370, 616
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	7 cut(s)	263, 331, 479, 502, 537, 654, 1073
SsiI	CCGC	3 cut(s)	118, 471, 521
SspMI	CTAG	2 cut(s)	351, 1037
StyD4I	CCNGG	4 cut(s)	173, 427, 691, 832
StyI	CCWWGG	1 cut(s)	800
TaaI	ACNGT	2 cut(s)	125, 286
TaiI	ACGT	1 cut(s)	1015
TaqI	TCGA	3 cut(s)	459, 780, 1041
TasI	AATT	7 cut(s)	263, 331, 479, 502, 537, 654, 1073
TatI	WGTACW	2 cut(s)	564, 879
TauI	GCSGC	2 cut(s)	120, 523
TfiI	GAWTC	2 cut(s)	461, 495
Tru1I	TTAA	6 cut(s)	414, 657, 840, 852, 942, 1026
Tru9I	TTAA	6 cut(s)	414, 657, 840, 852, 942, 1026
TseFI	GTSAC	2 cut(s)	431, 1019
TseI	GCWGC	2 cut(s)	7, 896
Tsp45I	GTSAC	2 cut(s)	431, 1019
TspDTI	ATGAA	2 cut(s)	625, 782
TspGWI	ACGGA	3 cut(s)	529, 588, 1007
VpaK11BI	GGWCC	1 cut(s)	804
XapI	RAATTY	3 cut(s)	263, 479, 537
XbaI	TCTAGA	1 cut(s)	350
XceI	RCATGY	1 cut(s)	965
XspI	CTAG	2 cut(s)	351, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.