Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Forward (+)

1122870 .. 1125480

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCGGCGTTCTTGCACCAGCGCCCACTCCACAACCCACTCTCAGATCCACACCCACTGTCCCCACCTTCCTCAAATCCCAGAAAACCCTTCTCATCTTTCAGCCCCATAACCCTTTTAGTCCTTCTCGGCCTTGTAATAATTCTGGGTGTGTTTCTGCCATGGACGAGTATGCAAGAGGGTTTGTTCTCGATCACTAACAGGTCCTCACTCAAATGGAGGAGTTACACATTGGCCCAAGCTGCGGCCTTTGTGGCCCAAAATGGGACCTTGATTGTTTGTGCGGTGAGTGAGCCTTACTTGCCCTTTTTGAACAACTGGTTGATTAGCATTGCGAGGCAGAAGCACCAGGACAAGGTGCTTGTGATTGCTGAGGACTATGGGACGCTTTATAAGGTCAATGAGAGGTGGCCAGGCCACGCCGTGCTTATTCCGCCCGCTCTTGATGCTCAGGCTGCCCATAAGTTTGGTTCTCAGGGATTCTTCAACTTTACTTCCAGAAGGCCACGCCACCTCTTAAACATTTTGGAGCTTGGGTACAGTGTGATGTACAATGACGTTGATATGGTGTGGTTGGCTGATCCCTTTCCTTATTTGGTAGGGAATCATGATGTGTACTTCACAGATGATATGACTCCAGTCAAACCTCTGAACCATTCTCATGATTTGCCACCTCCAGGTAAGAAAGGACGCACTTACATATGCAGCTGTATGATCTTCTTACGTCCTACAAGCGGTGCAAAATTAATTATGAAGAAGTGGATAGAGGAAATGCAGCAGGAGCCCTGGTCCAGGGCAAAGAAAGCAAATGATCAACCTGCTTTTAATTGGGCATTAGACAAAAATGCTGCACAGGTATATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

289

Amino Acids

32.77

Weight (kDa)

9.17

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	116 - 284	4.5e-37	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	826
AccBSI	CCGCTC	1 cut(s)	440
AciI	CCGC	5 cut(s)	245, 284, 434, 438, 735
AclWI	GGATC	2 cut(s)	41, 575
AcoI	YGGCCR	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	3 cut(s)	539, 551, 617
AfiI	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 677, 734, 792
AgsI	TTSAA	2 cut(s)	313, 487
AjnI	CCWGG	5 cut(s)	348, 412, 676, 785, 791
AluBI	AGCT	3 cut(s)	242, 532, 708
AluI	AGCT	3 cut(s)	242, 532, 708
AlwI	GGATC	2 cut(s)	41, 575
AoxI	GGCC	7 cut(s)	130, 234, 246, 255, 410, 415, 503
ApeKI	GCWGC	5 cut(s)	242, 455, 705, 775, 848
AseI	ATTAAT	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	5 cut(s)	204, 235, 256, 267, 789
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	204, 267, 789
BalI	TGGCCA	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	786
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	5 cut(s)	229, 442, 717, 787, 835
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	5 cut(s)	350, 414, 678, 787, 793
BclI	TGATCA	1 cut(s)	811
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	826
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	6 cut(s)	243, 246, 456, 706, 776, 849
BlsI	GCNGC	6 cut(s)	244, 247, 457, 707, 777, 850
Bme1390I	CCNGG	5 cut(s)	350, 414, 678, 787, 793
Bme18I	GGWCC	3 cut(s)	204, 267, 789
BmgT120I	GGNCC	5 cut(s)	204, 235, 256, 267, 789
BmiI	GGNNCC	2 cut(s)	268, 783
BmrFI	CCNGG	5 cut(s)	350, 414, 678, 787, 793
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	638
BpmI	CTGGAG	2 cut(s)	621, 660
Bpu10I	CCTNAGC	2 cut(s)	372, 450
BsaJI	CCNNGG	3 cut(s)	161, 785, 792
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 551, 773, 803
Bsc4I	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 677, 734, 792
Bse1I	ACTGG	2 cut(s)	323, 638
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	5 cut(s)	350, 414, 678, 787, 793
BseDI	CCNNGG	3 cut(s)	161, 785, 792
BseLI	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 677, 734, 792
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	4 cut(s)	57, 363, 464, 488
BseNI	ACTGG	2 cut(s)	323, 638
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	5 cut(s)	229, 442, 717, 787, 835
BsgI	GTGCAG	1 cut(s)	834
BshFI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
BslFI	GGGAC	3 cut(s)	46, 280, 397
BslI	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 677, 734, 792
BsmFI	GGGAC	3 cut(s)	46, 280, 397
BsnI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	46, 192, 580, 714, 811
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	5 cut(s)	245, 284, 434, 438, 735
BspANI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
BspCNI	CTCAG	4 cut(s)	56, 364, 463, 487
BspHI	TCATGA	2 cut(s)	607, 661
BspLI	GGNNCC	2 cut(s)	268, 783
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	2 cut(s)	41, 575
BsrBI	CCGCTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	323, 638
BssECI	CCNNGG	3 cut(s)	161, 785, 792
BssMI	GATC	5 cut(s)	46, 192, 580, 714, 811
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	5 cut(s)	350, 414, 678, 787, 793
Bst4CI	ACNGT	2 cut(s)	60, 542
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	43, 372, 450, 474
BstDSI	CCRYGG	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	790
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	5 cut(s)	49, 195, 583, 717, 814
BstMBI	GATC	5 cut(s)	46, 192, 580, 714, 811
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 254, 301, 433, 446, 455, 781, 803
BstNI	CCWGG	5 cut(s)	350, 414, 678, 787, 793
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	5 cut(s)	348, 412, 676, 785, 791
BstV1I	GCAGC	5 cut(s)	229, 442, 717, 787, 835
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
BtgI	CCRYGG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	56, 547
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	2 cut(s)	607, 661
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	5 cut(s)	204, 235, 256, 267, 789
CseI	GACGC	2 cut(s)	394, 699
Csp6I	GTAC	3 cut(s)	538, 550, 616
CviAII	CATG	3 cut(s)	162, 608, 662
CviQI	GTAC	3 cut(s)	538, 550, 616
DdeI	CTNAG	4 cut(s)	43, 372, 450, 474
DpnI	GATC	5 cut(s)	48, 194, 582, 716, 813
DpnII	GATC	5 cut(s)	46, 192, 580, 714, 811
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	786
Eco47I	GGWCC	3 cut(s)	204, 267, 789
EcoNI	CCTNNNNNAGG	1 cut(s)	790
EcoO109I	RGGNCCY	2 cut(s)	204, 267
EcoRII	CCWGG	5 cut(s)	348, 412, 676, 785, 791
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	165, 611, 665
FaqI	GGGAC	3 cut(s)	46, 280, 397
FatI	CATG	3 cut(s)	161, 607, 661
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	6 cut(s)	243, 246, 456, 706, 776, 849
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	6 cut(s)	243, 246, 456, 706, 776, 849
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	6 cut(s)	243, 246, 456, 706, 776, 849
GsuI	CTGGAG	2 cut(s)	621, 660
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
HgaI	GACGC	2 cut(s)	394, 699
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	165, 611, 665
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	480, 604, 634
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	2 cut(s)	46, 651
Hpy188III	TCNNGA	5 cut(s)	190, 443, 498, 608, 662
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	4 cut(s)	78, 100, 134, 495
HpyCH4III	ACNGT	2 cut(s)	60, 542
HpyCH4IV	ACGT	2 cut(s)	558, 724
HpyCH4V	TGCA	6 cut(s)	16, 175, 705, 740, 775, 851
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 254, 301, 433, 446, 455, 781, 803
HpyF3I	CTNAG	4 cut(s)	43, 372, 450, 474
HpySE526I	ACGT	2 cut(s)	558, 724
Hsp92II	CATG	3 cut(s)	165, 611, 665
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	5 cut(s)	46, 192, 580, 714, 811
LmnI	GCTCC	2 cut(s)	529, 781
Lsp1109I	GCAGC	5 cut(s)	229, 442, 717, 787, 835
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	2 cut(s)	558, 724
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	5 cut(s)	48, 194, 582, 716, 813
MbiI	CCGCTC	1 cut(s)	440
MboI	GATC	5 cut(s)	46, 192, 580, 714, 811
MboII	GAAGA	3 cut(s)	475, 709, 766
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	4 cut(s)	141, 743, 747, 826
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	628
Mox20I	TGGCCA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	3 cut(s)	518, 746, 825
MslI	CAYNNNNRTG	2 cut(s)	214, 660
Msp20I	TGGCCA	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	708
MspR9I	CCNGG	5 cut(s)	350, 414, 678, 787, 793
MvaI	CCWGG	5 cut(s)	350, 414, 678, 787, 793
MwoI	GCNNNNNNNGC	8 cut(s)	242, 254, 301, 433, 446, 455, 781, 803
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	701
NdeII	GATC	5 cut(s)	46, 192, 580, 714, 811
NlaIII	CATG	3 cut(s)	165, 611, 665
NlaIV	GGNNCC	2 cut(s)	268, 783
NmeAIII	GCCGAG	1 cut(s)	108
PagI	TCATGA	2 cut(s)	607, 661
PfeI	GAWTC	2 cut(s)	480, 604
PkrI	GCNGC	6 cut(s)	244, 247, 457, 707, 777, 850
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	2 cut(s)	204, 267
PshAI	GACNNNNGTC	1 cut(s)	638
PshBI	ATTAAT	1 cut(s)	746
PsiI	TTATAA	1 cut(s)	393
Psp5II	RGGWCCY	2 cut(s)	204, 267
Psp6I	CCWGG	5 cut(s)	348, 412, 676, 785, 791
PspGI	CCWGG	5 cut(s)	348, 412, 676, 785, 791
PspN4I	GGNNCC	2 cut(s)	268, 783
PspPI	GGNCC	5 cut(s)	204, 235, 256, 267, 789
PspPPI	RGGWCCY	2 cut(s)	204, 267
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	708
RsaI	GTAC	3 cut(s)	539, 551, 617
RsaNI	GTAC	3 cut(s)	538, 550, 616
RseI	CAYNNNNRTG	2 cut(s)	214, 660
SaqAI	TTAA	3 cut(s)	518, 746, 825
SatI	GCNGC	6 cut(s)	243, 246, 456, 706, 776, 849
Sau3AI	GATC	5 cut(s)	46, 192, 580, 714, 811
Sau96I	GGNCC	5 cut(s)	204, 235, 256, 267, 789
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	5 cut(s)	350, 414, 678, 787, 793
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	1 cut(s)	436
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
SinI	GGWCC	3 cut(s)	204, 267, 789
SmiMI	CAYNNNNRTG	2 cut(s)	214, 660
Sse9I	AATT	4 cut(s)	141, 743, 747, 826
SsiI	CCGC	5 cut(s)	245, 284, 434, 438, 735
StyD4I	CCNGG	5 cut(s)	348, 412, 676, 785, 791
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	60, 542
TaiI	ACGT	2 cut(s)	561, 727
TaqI	TCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	141, 743, 747, 826
TatI	WGTACW	2 cut(s)	549, 615
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	480, 604
Tru1I	TTAA	3 cut(s)	518, 746, 825
Tru9I	TTAA	3 cut(s)	518, 746, 825
TscAI	CASTG	2 cut(s)	63, 547
TseI	GCWGC	5 cut(s)	242, 455, 705, 775, 848
TspDTI	ATGAA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	63, 547
VpaK11BI	GGWCC	3 cut(s)	204, 267, 789
VspI	ATTAAT	1 cut(s)	746
XagI	CCTNNNNNAGG	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.