Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009229

Physical Location & Seq

Genomic Coordinates Forward (+)

876663 .. 879359

Gene Structure 2697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCGGCGTTCTTGCACCAGCGCCCACTCCACAACCCACTCTCAGATCCACACCCACTGTCCCCACCTTCCTCAAATCCCAGAAAACCCTTCTCATCTTTCAGCCCCATAACCCTTTTAGTCCTTCTCGGCCTTCTAATAATTCTGGGTGTGTTTCTGCCATGGACGAGTATGCAAGAGGGTTTGTTCTCCATCACTAACAGGTCCTCACTCAAATGGAGGAGTTACACATTGGCCCAAGCGGCGGCCTTTGTGGCCCAAAATGGGACCTTGATTGTTTGTGCGGTGAGTGAGCCTTACTTGCCGTTTTTGAACAACTGGTTGATTAGCATTGCGAGGCAGAAGCACCAGGACAAGGTGCTTGTGATTGCTGAGGACTATGGGACGCTTTATAAGGTCAATGAGAGGTGGCCAGGCCACGCCGTGCTTATTCCGCCGGCTCTTGATGCTCAGGCTGCCCACAAGTTTGGTTCTCAGGGATTCTTCAACTTTACTTCCAGAAGGCCACGCCACCTCTTAAACATTTTGGAGCTTGGGTACAGTGTGATGTACAATGACGTTGATATGGTGTGGTTGGCTGATCCCTTTCCTTATTTGGTAGGGAATCATGATGTGTACTTCACAGATGATATGACTCCAGTAAGTAGCAATCTTGCTTTAACAATTCCTTACGAGTCTATTAGATCGGAGCTCAGAAGGTCGTGTCTATACTTCAGCAATGCCTGCCCTTTATTTTGGTTTACATCTAAAAGTAATTTCTTGTATTTGGGTAACCAGGTCAAACCTCTGAACCATTCTCATGATTTGCCACCTCCAGGTAAGAAAGGACGCACTTACATATGCAGCTGTATGATCTTCTTACGTCCTACAAGCGGTGCAAAATTAATTATGAAGAAGTGGATAGAGGAAATGCAGCAGGAGCCCTGGTCCAGGGCAAAGAAAGCAAATGATCAACCTGCTTTTAACTGGGCATTAGACAAAAATGCTGCACAGGTATATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009664 GO:0009832 GO:0009856 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0017144 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035252 GO:0036211 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0048868 GO:0051704 GO:0052325 GO:0052546 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

335

Amino Acids

38.11

Weight (kDa)

9.2

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	116 - 330	1.5e-32	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56550 AT1G56550 AT4G01220 AT4G01220 AT4G01750 AT4G01770 AT4G01770
fragaria_vesca	FvH4_5g17520
malus_domestica	MD01G1073300.v1.1
prunus_persica	Prupe.2G179700_v2.0.a1
pyrus_communis	pycom01g10240 pycom07g12660
rosa_chinensis	RchiOBHm_Chr7g0178141
rosa_laevigata	RLG00000005468
rosa_multiflora	Rmu_sc0007855.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275140
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013200 Rh7BG013100 Rh7CG013000 Rh7DG013300
rosa_wichuraiana	Rw7G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	964
AciI	CCGC	5 cut(s)	242, 245, 284, 434, 873
AclWI	GGATC	2 cut(s)	41, 575
AcoI	YGGCCR	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	697
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	3 cut(s)	539, 551, 617
AfiI	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 815, 872, 930
AgsI	TTSAA	2 cut(s)	313, 487
AjnI	CCWGG	6 cut(s)	348, 412, 774, 814, 923, 929
AluBI	AGCT	3 cut(s)	532, 691, 846
AluI	AGCT	3 cut(s)	532, 691, 846
Alw21I	GWGCWC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	41, 575
AoxI	GGCC	7 cut(s)	130, 234, 246, 255, 410, 415, 503
ApeKI	GCWGC	4 cut(s)	455, 843, 913, 986
AseI	ATTAAT	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	5 cut(s)	204, 235, 256, 267, 927
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	204, 267, 927
BalI	TGGCCA	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	693, 924
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	442, 855, 925, 973
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	289, 407
BciT130I	CCWGG	6 cut(s)	350, 414, 776, 816, 925, 931
BclI	TGATCA	1 cut(s)	949
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	964
BglI	GCCNNNNNGGC	2 cut(s)	242, 254
BisI	GCNGC	6 cut(s)	243, 246, 456, 844, 914, 987
BlsI	GCNGC	6 cut(s)	244, 247, 457, 845, 915, 988
Bme1390I	CCNGG	6 cut(s)	350, 414, 776, 816, 925, 931
Bme18I	GGWCC	3 cut(s)	204, 267, 927
BmgT120I	GGNCC	5 cut(s)	204, 235, 256, 267, 927
BmiI	GGNNCC	2 cut(s)	268, 921
BmrFI	CCNGG	6 cut(s)	350, 414, 776, 816, 925, 931
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	976
BpmI	CTGGAG	2 cut(s)	621, 798
Bpu10I	CCTNAGC	2 cut(s)	372, 450
BsaJI	CCNNGG	3 cut(s)	161, 923, 930
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 551, 911, 941
Bsc4I	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 815, 872, 930
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	3 cut(s)	323, 638, 971
Bse3DI	GCAATG	2 cut(s)	330, 724
BseBI	CCWGG	6 cut(s)	350, 414, 776, 816, 925, 931
BseDI	CCNNGG	3 cut(s)	161, 923, 930
BseLI	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 815, 872, 930
BseMI	GCAATG	2 cut(s)	330, 724
BseMII	CTCAG	5 cut(s)	57, 363, 464, 488, 706
BseNI	ACTGG	3 cut(s)	323, 638, 971
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	442, 855, 925, 973
BsgI	GTGCAG	1 cut(s)	972
BshFI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	3 cut(s)	46, 280, 397
BslI	CCNNNNNNNGG	6 cut(s)	244, 264, 355, 815, 872, 930
BsmFI	GGGAC	3 cut(s)	46, 280, 397
BsnI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
Bsp1286I	GDGCHC	2 cut(s)	693, 924
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	46, 580, 683, 852, 949
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	5 cut(s)	242, 245, 284, 434, 873
BspANI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
BspCNI	CTCAG	5 cut(s)	56, 364, 463, 487, 705
BspHI	TCATGA	2 cut(s)	607, 799
BspLI	GGNNCC	2 cut(s)	268, 921
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	2 cut(s)	41, 575
BsrDI	GCAATG	2 cut(s)	330, 724
BsrFI	RCCGGY	1 cut(s)	436
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	323, 638, 971
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	3 cut(s)	161, 923, 930
BssMI	GATC	5 cut(s)	46, 580, 683, 852, 949
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	6 cut(s)	350, 414, 776, 816, 925, 931
Bst4CI	ACNGT	2 cut(s)	60, 542
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	2 cut(s)	438, 724
BstDEI	CTNAG	5 cut(s)	43, 372, 450, 474, 692
BstDSI	CCRYGG	1 cut(s)	161
BstEII	GGTNACC	1 cut(s)	770
BstENI	CCTNNNNNAGG	1 cut(s)	928
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	5 cut(s)	49, 583, 686, 855, 952
BstMBI	GATC	5 cut(s)	46, 580, 683, 852, 949
BstMWI	GCNNNNNNNGC	9 cut(s)	242, 254, 301, 433, 446, 455, 723, 919, 941
BstNI	CCWGG	6 cut(s)	350, 414, 776, 816, 925, 931
BstPI	GGTNACC	1 cut(s)	770
BstSCI	CCNGG	6 cut(s)	348, 412, 774, 814, 923, 929
BstV1I	GCAGC	4 cut(s)	442, 855, 925, 973
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
BtgI	CCRYGG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	56, 547
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	2 cut(s)	438, 724
CciI	TCATGA	2 cut(s)	607, 799
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	5 cut(s)	204, 235, 256, 267, 927
CseI	GACGC	2 cut(s)	394, 837
CsiI	ACCWGGT	1 cut(s)	774
Csp6I	GTAC	3 cut(s)	538, 550, 616
CviAII	CATG	3 cut(s)	162, 608, 800
CviQI	GTAC	3 cut(s)	538, 550, 616
DdeI	CTNAG	5 cut(s)	43, 372, 450, 474, 692
DpnI	GATC	5 cut(s)	48, 582, 685, 854, 951
DpnII	GATC	5 cut(s)	46, 580, 683, 852, 949
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	2 cut(s)	693, 924
Eco47I	GGWCC	3 cut(s)	204, 267, 927
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	697
Eco91I	GGTNACC	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	928
EcoO109I	RGGNCCY	2 cut(s)	204, 267
EcoO65I	GGTNACC	1 cut(s)	770
EcoRII	CCWGG	6 cut(s)	348, 412, 774, 814, 923, 929
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	2 cut(s)	693, 924
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	165, 611, 803
FaqI	GGGAC	3 cut(s)	46, 280, 397
FatI	CATG	3 cut(s)	161, 607, 799
FauNDI	CATATG	1 cut(s)	839
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	6 cut(s)	243, 246, 456, 844, 914, 987
FriOI	GRGCYC	2 cut(s)	693, 924
Fsp4HI	GCNGC	6 cut(s)	243, 246, 456, 844, 914, 987
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	6 cut(s)	243, 246, 456, 844, 914, 987
GsuI	CTGGAG	2 cut(s)	621, 798
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	7 cut(s)	132, 236, 248, 257, 412, 417, 505
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	2 cut(s)	394, 837
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	165, 611, 803
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	4 cut(s)	480, 604, 634, 674
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	616, 741
Hpy188I	TCNGA	4 cut(s)	46, 688, 695, 789
Hpy188III	TCNNGA	4 cut(s)	443, 498, 608, 800
Hpy8I	GTNNAC	2 cut(s)	616, 741
HpyAV	CCTTC	6 cut(s)	78, 100, 134, 143, 495, 690
HpyCH4III	ACNGT	2 cut(s)	60, 542
HpyCH4IV	ACGT	2 cut(s)	558, 862
HpyCH4V	TGCA	6 cut(s)	16, 175, 843, 878, 913, 989
HpyF10VI	GCNNNNNNNGC	9 cut(s)	242, 254, 301, 433, 446, 455, 723, 919, 941
HpyF3I	CTNAG	5 cut(s)	43, 372, 450, 474, 692
HpySE526I	ACGT	2 cut(s)	558, 862
Hsp92II	CATG	3 cut(s)	165, 611, 803
HspAI	GCGC	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	5 cut(s)	46, 580, 683, 852, 949
LmnI	GCTCC	3 cut(s)	529, 688, 919
Lsp1109I	GCAGC	4 cut(s)	442, 855, 925, 973
LweI	GCATC	1 cut(s)	436
MabI	ACCWGGT	1 cut(s)	774
MaeII	ACGT	2 cut(s)	558, 862
MaeIII	GTNAC	2 cut(s)	224, 770
MalI	GATC	5 cut(s)	48, 582, 685, 854, 951
MboI	GATC	5 cut(s)	46, 580, 683, 852, 949
MboII	GAAGA	3 cut(s)	475, 847, 904
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	693, 924
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	5 cut(s)	141, 663, 754, 881, 885
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	628, 683
Mox20I	TGGCCA	1 cut(s)	412
MroNI	GCCGGC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	4 cut(s)	518, 659, 884, 963
MslI	CAYNNNNRTG	2 cut(s)	214, 798
Msp20I	TGGCCA	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	846
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	6 cut(s)	350, 414, 776, 816, 925, 931
MvaI	CCWGG	6 cut(s)	350, 414, 776, 816, 925, 931
MwoI	GCNNNNNNNGC	9 cut(s)	242, 254, 301, 433, 446, 455, 723, 919, 941
NaeI	GCCGGC	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	839
NdeII	GATC	5 cut(s)	46, 580, 683, 852, 949
NgoMIV	GCCGGC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	165, 611, 803
NlaIV	GGNNCC	2 cut(s)	268, 921
NmeAIII	GCCGAG	1 cut(s)	108
PagI	TCATGA	2 cut(s)	607, 799
PdiI	GCCGGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	480, 604
PkrI	GCNGC	6 cut(s)	244, 247, 457, 845, 915, 988
PleI	GAGTC	2 cut(s)	628, 682
PpsI	GAGTC	2 cut(s)	628, 682
PpuMI	RGGWCCY	2 cut(s)	204, 267
PshBI	ATTAAT	1 cut(s)	884
PsiI	TTATAA	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	693
Psp5II	RGGWCCY	2 cut(s)	204, 267
Psp6I	CCWGG	6 cut(s)	348, 412, 774, 814, 923, 929
PspEI	GGTNACC	1 cut(s)	770
PspGI	CCWGG	6 cut(s)	348, 412, 774, 814, 923, 929
PspN4I	GGNNCC	2 cut(s)	268, 921
PspPI	GGNCC	5 cut(s)	204, 235, 256, 267, 927
PspPPI	RGGWCCY	2 cut(s)	204, 267
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	846
RsaI	GTAC	3 cut(s)	539, 551, 617
RsaNI	GTAC	3 cut(s)	538, 550, 616
RseI	CAYNNNNRTG	2 cut(s)	214, 798
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	518, 659, 884, 963
SatI	GCNGC	6 cut(s)	243, 246, 456, 844, 914, 987
Sau3AI	GATC	5 cut(s)	46, 580, 683, 852, 949
Sau96I	GGNCC	5 cut(s)	204, 235, 256, 267, 927
SchI	GAGTC	2 cut(s)	628, 683
ScrFI	CCNGG	6 cut(s)	350, 414, 776, 816, 925, 931
SduI	GDGCHC	2 cut(s)	693, 924
SexAI	ACCWGGT	1 cut(s)	774
SfaNI	GCATC	1 cut(s)	436
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
SinI	GGWCC	3 cut(s)	204, 267, 927
SmiMI	CAYNNNNRTG	2 cut(s)	214, 798
Sse9I	AATT	5 cut(s)	141, 663, 754, 881, 885
SsiI	CCGC	5 cut(s)	242, 245, 284, 434, 873
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	6 cut(s)	348, 412, 774, 814, 923, 929
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	60, 542
TaiI	ACGT	2 cut(s)	561, 865
TasI	AATT	5 cut(s)	141, 663, 754, 881, 885
TatI	WGTACW	2 cut(s)	549, 615
TauI	GCSGC	2 cut(s)	245, 248
TfiI	GAWTC	2 cut(s)	480, 604
Tru1I	TTAA	4 cut(s)	518, 659, 884, 963
Tru9I	TTAA	4 cut(s)	518, 659, 884, 963
TscAI	CASTG	2 cut(s)	63, 547
TseI	GCWGC	4 cut(s)	455, 843, 913, 986
TspDTI	ATGAA	1 cut(s)	905
TspRI	CASTG	2 cut(s)	63, 547
VpaK11BI	GGWCC	3 cut(s)	204, 267, 927
VspI	ATTAAT	1 cut(s)	884
XagI	CCTNNNNNAGG	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.