Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Forward (+)

55461650 .. 55464972

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0413800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAACCAATTCTTCTCCTTCGTTCAAGATAATCTTGGGCTCATCTTCGATAGCTCGCCGGAAAATTTTGGCTGAAATGGGATATGAATTCACACTCATGACTGCAGACATTGACGAAAAAAGCATCCGAAAGGAGAAACCGGAAGAGTTGGTTATGGTTCTTGCTCAGGCAAAGGCTGATGCAATCATATCGAAAATACAAACTACCCATAGTAAAGAGAAGGATGCTGAACCAACAATTGTAATTGCGGCAGATACACTGATGGAAACTTCTCAGGCAGAAGCCATCCGGCCTAAGCTCCCAGTTGATGACTACGTAAAGGATGCTGAACCAACGCTATTAATTACCTCTGATCAAGTGGTAGTCTATGAAGGTGCTGTCAGGGAAAAACCATCCAGCAAGGAAGAAGCACGGCAATTTTTGAAAGACTATTCTGGAGGACATGCAGCAACAGTGGGATCTGTGCTTGTTACAAACCTTAAAACAGGATTCAGTAAAGGAGAATGGGACCGAGTGGAGATCTATTTCCATGAAATACCAGATGAAGCCATTGAGAAGCTGATTGAGGAAGGGACGGTGCTCAAAGTTGCCGGGGGACTGATAATAGAGCATCCTCTGATTCTTCCCTTTGTCAAAGAAGTGGTAGGGACTACTGATAGTGTGATGGGACTTCCAAAAGATATAACGGAGAGACTTCTTAAAGAAGCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURF1

Protein Analysis

238

Amino Acids

26.21

Weight (kDa)

4.93

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Maf	PF02545	10 - 91	1.7e-16	Maf-like protein
Maf	PF02545	101 - 236	2.7e-25	Maf-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	469
AcsI	RAATTY	2 cut(s)	66, 89
AgsI	TTSAA	2 cut(s)	28, 427
AluBI	AGCT	4 cut(s)	56, 301, 562, 710
AluI	AGCT	4 cut(s)	56, 301, 562, 710
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	1 cut(s)	469
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	66, 89
AseI	ATTAAT	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	4 cut(s)	259, 296, 403, 661
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	688
BfmI	CTRYAG	2 cut(s)	105, 713
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	2 cut(s)	252, 450
BlsI	GCNGC	2 cut(s)	253, 451
Bme1390I	CCNGG	1 cut(s)	595
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	595
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	5 cut(s)	135, 172, 217, 316, 622
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	2 cut(s)	168, 297
BpuMI	CCSGG	1 cut(s)	595
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	6 cut(s)	126, 232, 288, 331, 395, 613
BseMII	CTCAG	2 cut(s)	182, 290
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	461
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	4 cut(s)	61, 143, 292, 594
BslFI	GGGAC	5 cut(s)	524, 589, 612, 664, 684
BsmAI	GTCTC	1 cut(s)	688
BsmFI	GGGAC	5 cut(s)	524, 589, 612, 664, 684
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	44, 585
Bsp143I	GATC	3 cut(s)	355, 461, 522
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	181, 289
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	512
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	355, 461, 522
Bst4CI	ACNGT	2 cut(s)	457, 580
Bst6I	CTCTTC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	168, 276, 297
BstF5I	GGATG	6 cut(s)	126, 232, 288, 331, 395, 613
BstKTI	GATC	3 cut(s)	358, 464, 525
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	3 cut(s)	355, 461, 522
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	593
BstSFI	CTRYAG	2 cut(s)	105, 713
BstSNI	TACGTA	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	461
BstX2I	RGATCY	2 cut(s)	461, 522
BstYI	RGATCY	2 cut(s)	461, 522
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	6 cut(s)	126, 232, 288, 331, 395, 613
BtsIMutI	CAGTG	2 cut(s)	260, 462
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	511
CviAII	CATG	3 cut(s)	100, 446, 533
DdeI	CTNAG	3 cut(s)	168, 276, 297
DpnI	GATC	3 cut(s)	357, 463, 524
DpnII	GATC	3 cut(s)	355, 461, 522
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco105I	TACGTA	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	103, 449, 536
FaiI	YATR	9 cut(s)	87, 101, 158, 191, 213, 372, 447, 534, 686
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	5 cut(s)	524, 589, 612, 664, 684
FatI	CATG	3 cut(s)	99, 445, 532
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	252, 450
FokI	GGATG	6 cut(s)	113, 239, 275, 338, 382, 600
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	252, 450
GluI	GCNGC	2 cut(s)	252, 450
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	4 cut(s)	61, 143, 292, 594
Hin1II	CATG	3 cut(s)	103, 449, 536
HinfI	GANTC	2 cut(s)	492, 622
HpaII	CCGG	4 cut(s)	61, 143, 292, 594
Hpy188I	TCNGA	3 cut(s)	131, 355, 621
Hpy188III	TCNNGA	3 cut(s)	28, 100, 438
HpyAV	CCTTC	4 cut(s)	30, 217, 368, 566
HpyCH4III	ACNGT	2 cut(s)	457, 580
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	107, 185, 449
HpyF3I	CTNAG	3 cut(s)	168, 276, 297
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	103, 449, 536
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	355, 461, 522
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	5 cut(s)	135, 172, 217, 316, 622
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	3 cut(s)	357, 463, 524
MboI	GATC	3 cut(s)	355, 461, 522
MboII	GAAGA	5 cut(s)	6, 39, 158, 419, 617
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	461, 522
MhlI	GDGCHC	2 cut(s)	44, 585
MluCI	AATT	7 cut(s)	10, 66, 89, 240, 246, 345, 419
MnlI	CCTC	4 cut(s)	361, 434, 562, 627
MseI	TTAA	3 cut(s)	344, 483, 702
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	4 cut(s)	61, 143, 292, 594
MspR9I	CCNGG	1 cut(s)	595
MunI	CAATTG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	595
NdeII	GATC	3 cut(s)	355, 461, 522
NlaIII	CATG	3 cut(s)	103, 449, 536
NlaIV	GGNNCC	1 cut(s)	512
NspI	RCATGY	1 cut(s)	449
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	492, 622
PkrI	GCNGC	2 cut(s)	253, 451
Ppu21I	YACGTR	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	461, 522
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	344, 483, 702
SatI	GCNGC	2 cut(s)	252, 450
Sau3AI	GATC	3 cut(s)	355, 461, 522
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	2 cut(s)	44, 585
SetI	ASST	8 cut(s)	58, 303, 321, 353, 379, 483, 564, 712
SfaNI	GCATC	5 cut(s)	135, 172, 217, 316, 622
SfcI	CTRYAG	2 cut(s)	105, 713
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	98
SnaBI	TACGTA	1 cut(s)	319
Sse9I	AATT	7 cut(s)	10, 66, 89, 240, 246, 345, 419
SsiI	CCGC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	457, 580
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	50, 194
TaqII	GACCGA	1 cut(s)	528
TasI	AATT	7 cut(s)	10, 66, 89, 240, 246, 345, 419
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	492, 622
Tru1I	TTAA	3 cut(s)	344, 483, 702
Tru9I	TTAA	3 cut(s)	344, 483, 702
TscAI	CASTG	2 cut(s)	267, 462
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	102, 387, 549, 561
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	2 cut(s)	267, 462
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	2 cut(s)	66, 89
XceI	RCATGY	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.