pycom14g19890

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0004105
Physical Location & Seq
Reverse (-)
21075953 .. 21077003
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g19890.1

Sequence Viewer

Length: 483 bp
ATGGCTTCGATCTCAAAACACTTGCTTCTCTTCTTGTTTCTGTCCCTTTTCGAGTTGTTCGGAGTCTCCCATGGCTGGAAGCTTACTGCATTGCCTGATAAGGAGGGCGCTGCTGGTGGCGGTAGTGATTCTTCCATCCAATGCGTGCAGAAACTGATTCCTTGTCAGGCGTATTTGAAGGCGCCGGAGAAGGCTCCCTCAACATGCTGCTTGCCACTAAAGAAGTTGGTTTCGGATAGTACCGAGTGCCTTTGCACCCTCTTCAACAACGATGACATGTTGAGCAACTTTAACATAACGCAGGGTGATGCCTTGAAGCTTTCCAAGGCTTGTGATGCCAATGCTGACATTTCAGTATGCAAAAAGGGTTCTTCCTCAGGCAACTCTCCCGGCAGTTCAAAGAGTGCAGCTTACGCGCTGTCCCCACTCGCCGGATCTGGTTTTGCTGTCGTCTTGATGGCTTTGATCATTGCGGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

161

Amino Acids

16.63

Weight (kDa)

7.51

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 44 - 120 2.9e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AccII CGCG 1 cut(s) 416
AciI CCGC 2 cut(s) 120, 473
AclWI GGATC 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 75, 431
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 4 cut(s) 178, 265, 316, 399
AluBI AGCT 3 cut(s) 82, 319, 410
AluI AGCT 3 cut(s) 82, 319, 410
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 110, 207, 407
AspLEI GCGC 3 cut(s) 110, 184, 418
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 317
AxyI CCTNAGG 1 cut(s) 376
BanI GGYRCC 1 cut(s) 181
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbvI GCAGC 3 cut(s) 97, 194, 419
BccI CCATC 2 cut(s) 143, 451
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 70
BfoI RGCGCY 2 cut(s) 111, 185
BisI GCNGC 4 cut(s) 111, 208, 408, 474
BlsI GCNGC 4 cut(s) 112, 209, 409, 475
Bme1390I CCNGG 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 183, 195
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 2 cut(s) 298, 325
BpuMI CCSGG 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 70, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 431
Bse21I CCTNAGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 89, 468
BseDI CCNNGG 2 cut(s) 70, 324
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 75, 431
BseMI GCAATG 2 cut(s) 89, 468
BseMII CTCAG 1 cut(s) 390
BseXI GCAGC 3 cut(s) 97, 194, 419
BsgI GTGCAG 2 cut(s) 167, 426
Bsh1236I CGCG 1 cut(s) 416
BshNI GGYRCC 1 cut(s) 181
BsiSI CCGG 3 cut(s) 185, 390, 432
BslFI GGGAC 2 cut(s) 28, 406
BslI CCNNNNNNNGG 2 cut(s) 75, 431
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 2 cut(s) 28, 406
Bsp143I GATC 3 cut(s) 9, 434, 465
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 120, 473
BspCNI CTCAG 1 cut(s) 389
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 2 cut(s) 183, 195
BspPI GGATC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 89, 468
BssECI CCNNGG 2 cut(s) 70, 324
BssMI GATC 3 cut(s) 9, 434, 465
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 2 cut(s) 70, 324
Bst6I CTCTTC 2 cut(s) 35, 266
BstACI GRCGYC 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 146, 212
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 2 cut(s) 111, 185
BstHHI GCGC 3 cut(s) 110, 184, 418
BstKTI GATC 3 cut(s) 12, 437, 468
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 9, 434, 465
BstMWI GCNNNNNNNGC 2 cut(s) 335, 413
BstNSI RCATGY 2 cut(s) 207, 280
BstSCI CCNGG 1 cut(s) 388
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 3 cut(s) 97, 194, 419
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
Bsu36I CCTNAGG 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 146, 212
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 3 cut(s) 110, 184, 418
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 71, 204, 277
CviJI RGCY 8 cut(s) 5, 75, 82, 194, 319, 329, 410, 461
CviKI_1 RGCY 8 cut(s) 5, 75, 82, 194, 319, 329, 410, 461
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 376
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 11, 436, 467
DpnII GATC 3 cut(s) 9, 434, 465
Eam1104I CTCTTC 2 cut(s) 35, 266
EarI CTCTTC 2 cut(s) 35, 266
Eco130I CCWWGG 2 cut(s) 70, 324
Eco81I CCTNAGG 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 70, 324
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
ErhI CCWWGG 2 cut(s) 70, 324
FaeI CATG 3 cut(s) 74, 207, 280
FaiI YATR 5 cut(s) 72, 205, 278, 296, 358
FaqI GGGAC 2 cut(s) 28, 406
FatI CATG 3 cut(s) 70, 203, 276
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 111, 208, 408, 474
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 111, 208, 408, 474
GlaI GCGC 3 cut(s) 109, 183, 417
GluI GCNGC 4 cut(s) 111, 208, 408, 474
HaeII RGCGCY 2 cut(s) 111, 185
HapII CCGG 3 cut(s) 185, 390, 432
HhaI GCGC 3 cut(s) 110, 184, 418
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 3 cut(s) 74, 207, 280
Hin6I GCGC 3 cut(s) 108, 182, 416
HinP1I GCGC 3 cut(s) 108, 182, 416
HindIII AAGCTT 2 cut(s) 80, 317
HinfI GANTC 3 cut(s) 63, 128, 157
HpaII CCGG 3 cut(s) 185, 390, 432
HphI GGTGA 1 cut(s) 317
Hpy188I TCNGA 2 cut(s) 62, 235
Hpy188III TCNNGA 1 cut(s) 454
HpyAV CCTTC 2 cut(s) 172, 184
HpyCH4V TGCA 5 cut(s) 89, 148, 255, 360, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 413
HpyF3I CTNAG 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 74, 207, 280
HspAI GCGC 3 cut(s) 108, 182, 416
KasI GGCGCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 9, 434, 465
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 97, 194, 419
LweI GCATC 2 cut(s) 298, 325
MalI GATC 3 cut(s) 11, 436, 467
MboI GATC 3 cut(s) 9, 434, 465
MboII GAAGA 4 cut(s) 22, 123, 253, 363
MflI RGATCY 1 cut(s) 434
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 4 cut(s) 97, 208, 269, 385
MseI TTAA 1 cut(s) 291
MspI CCGG 3 cut(s) 185, 390, 432
MspR9I CCNGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 335, 413
NarI GGCGCC 1 cut(s) 182
NciI CCSGG 1 cut(s) 390
NcoI CCATGG 1 cut(s) 70
NdeII GATC 3 cut(s) 9, 434, 465
NlaIII CATG 3 cut(s) 74, 207, 280
NlaIV GGNNCC 2 cut(s) 183, 195
NspI RCATGY 2 cut(s) 207, 280
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 2 cut(s) 128, 157
PkrI GCNGC 4 cut(s) 112, 209, 409, 475
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 183, 195
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 111, 208, 408, 474
Sau3AI GATC 3 cut(s) 9, 434, 465
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 390
SetI ASST 3 cut(s) 84, 321, 412
SfaNI GCATC 2 cut(s) 298, 325
SfoI GGCGCC 1 cut(s) 183
SsiI CCGC 2 cut(s) 120, 473
SspDI GGCGCC 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 2 cut(s) 70, 324
TaqI TCGA 2 cut(s) 8, 51
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 2 cut(s) 128, 157
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 3 cut(s) 110, 207, 407
XceI RCATGY 2 cut(s) 207, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.