RLG00000033334

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004105
Physical Location & Seq
Forward (+)
25884592 .. 25886247
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033334

Sequence Viewer

Length: 603 bp
ATGGCTAATTCAAAGCAATATTTGTTTCTGATTATCTTGGCTTCATGGGCGGTTGTCGGTTTAGGGTCTATTCAGTCCATGGCATGCATGCAGAAACTCATGCCTTGTCAATCATATTTTAAGAAACTGGACAATGTTCCTGATACGTGTTGTACGCCGATGAAGAATATGCTATCGGAGACGGCGGATGATAAGAACTGCATTTGCGGCGTCTTTGGCAACCCTATCATGTCGAAGAACCTGAATATAACCCAGGATGATACCATGAAGCTTGCAAAGGCTTGTGGCTTGAAGGCTGACATTTCAAAATGCGACAAGAAGGAAAAGGATACTGCATCGCCATCGTCATCACCAACCGAATCCACCCCAAGTCCATCACCATCAGCTTCTAATGCAGCCTCTCTTTTCGGCAAATCTGGTTTCACAGCCTCTTTCATTGCAACTCTAATTTTTTTCAGCAGCATTTTAATTAGGCTTATCCTAATTAGGAAAGGGAAACCATGTCTTGTTGACCCAATGTTCAAGTGTATTCTTGGAGCTTGTTTCTCTTCGGATTGCCATGGGATGCATGATGCTCTACTGATTCGGATGAACAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

201

Amino Acids

21.59

Weight (kDa)

8.71

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 18 - 104 2.9e-11 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 50, 185, 207
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 146
AgsI TTSAA 4 cut(s) 12, 292, 306, 523
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 271, 386, 539
AluI AGCT 3 cut(s) 271, 386, 539
Alw26I GTCTC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 395, 459
AsuHPI GGTGA 2 cut(s) 342, 369
BbvI GCAGC 2 cut(s) 407, 471
BccI CCATC 3 cut(s) 349, 382, 388
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 3 cut(s) 208, 396, 460
BlsI GCNGC 3 cut(s) 209, 397, 461
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 3 cut(s) 344, 555, 562
BsaAI YACGTR 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 78, 252, 559
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 3 cut(s) 78, 252, 559
BseGI GGATG 4 cut(s) 193, 262, 570, 594
BseMI GCAATG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 407, 471
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
Bsp19I CCATGG 2 cut(s) 78, 559
BspACI CCGC 3 cut(s) 50, 185, 207
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 78, 252, 559
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 78, 559
Bst2UI CCWGG 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 85, 89, 273
BstDEI CTNAG 1 cut(s) 600
BstDSI CCRYGG 2 cut(s) 78, 559
BstF5I GGATG 4 cut(s) 193, 262, 570, 594
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 392
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 87, 91
BstSCI CCNGG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 407, 471
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 2 cut(s) 78, 559
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 4 cut(s) 193, 262, 570, 594
Cac8I GCNNGC 3 cut(s) 85, 89, 273
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 153
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 600
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 78, 559
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 78, 559
EcoT22I ATGCAT 2 cut(s) 89, 570
ErhI CCWWGG 2 cut(s) 78, 559
Esp3I CGTCTC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 208, 396, 460
FokI GGATG 3 cut(s) 200, 269, 577
Fsp4HI GCNGC 3 cut(s) 208, 396, 460
GluI GCNGC 3 cut(s) 208, 396, 460
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 359, 583
HphI GGTGA 2 cut(s) 342, 369
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 4 cut(s) 30, 178, 553, 588
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 511
HpyAV CCTTC 2 cut(s) 286, 313
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 8 cut(s) 87, 91, 201, 275, 335, 395, 440, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 392
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 536
LpnPI CCDG 6 cut(s) 113, 153, 239, 254, 266, 402
Lsp1109I GCAGC 2 cut(s) 407, 471
LweI GCATC 3 cut(s) 344, 555, 562
MaeII ACGT 1 cut(s) 146
MboII GAAGA 3 cut(s) 175, 247, 540
MluCI AATT 5 cut(s) 7, 447, 468, 483, 595
MnlI CCTC 2 cut(s) 409, 439
Mph1103I ATGCAT 2 cut(s) 89, 570
MseI TTAA 2 cut(s) 120, 467
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 47, 207, 216, 392
NcoI CCATGG 2 cut(s) 78, 559
NsiI ATGCAT 2 cut(s) 89, 570
NspI RCATGY 2 cut(s) 87, 91
PaeI GCATGC 2 cut(s) 87, 91
PfeI GAWTC 2 cut(s) 359, 583
PkrI GCNGC 3 cut(s) 209, 397, 461
Ppu21I YACGTR 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 120, 467
SatI GCNGC 3 cut(s) 208, 396, 460
ScrFI CCNGG 1 cut(s) 254
SetI ASST 5 cut(s) 149, 243, 273, 388, 541
SfaNI GCATC 3 cut(s) 344, 555, 562
SphI GCATGC 2 cut(s) 87, 91
Sse9I AATT 5 cut(s) 7, 447, 468, 483, 595
SsiI CCGC 3 cut(s) 50, 185, 207
SspI AATATT 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 2 cut(s) 78, 559
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 233
TasI AATT 5 cut(s) 7, 447, 468, 483, 595
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 2 cut(s) 359, 583
Tru1I TTAA 2 cut(s) 120, 467
Tru9I TTAA 2 cut(s) 120, 467
TseI GCWGC 2 cut(s) 395, 459
TspDTI ATGAA 4 cut(s) 33, 176, 281, 424
XceI RCATGY 2 cut(s) 87, 91
Zsp2I ATGCAT 2 cut(s) 89, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.