Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004105

Physical Location & Seq

Genomic Coordinates Reverse (-)

67902203 .. 67903275

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTCAAAGTGTCTGTTTCTGATGGTGCTAGGTTTAGTGCGCCTTGTGGGCTCTGCGGCTGAGTTTTCCGGAGGCGGACTAGCGGGGCTGGTCAATGGTGGCGGTGATGGTGATCCAAGTGATTCAATGCCATGCGTGAGGAAACTGATCCCGTGCCAACCTTATTTGCATGCACCGGAGAAGGTGCCGGTATCGTGCTGTTTGCCGTTGAAGCAGATGGTTTCCGACGACACGAAATGCCTGTGTGGACTGTTTAACAATATTGATATGTTGAAGAAGCTTAACGTTACTCAGGATGAGGCCTTGAAGCTTCCCAAGGCTTGTGGAGCCAATGCTGACATTTCTATCTGCAAAAAAGATTCAACATCACCACCCAAATCACCAGAAACTCCATCAGCTTCGAACTCTAGTTCTCCTACGAAAAATGCAGCTTATTCACCTTCTCATTTCAGTGTTTCTGGATACTTCATGGCCCTAATCATTTCAGCAGCAGCAGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

169

Amino Acids

17.45

Weight (kDa)

8.06

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	45 - 118	6.2e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	47 - 114	3.7e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18280 AT1G73550 AT1G73550 AT1G73560
fragaria_vesca	FvH4_3g18850 FvH4_5g17510 FvH4_7g32070
malus_domestica	MD06G1228500.v1.1 MD14G1237700.v1.1
prunus_persica	Prupe.5G235000_v2.0.a1
pyrus_communis	pycom06g20480 pycom14g19890
rosa_chinensis	RchiOBHm_Chr5g0031711 RchiOBHm_Chr7g0178151
rosa_laevigata	RLG00000005467 RLG00000033334
rosa_multiflora	Rmu_sc0002999.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048540 Rroxscaffold_3G00275130
rosa_rugosa	Rorug05G0127500 Rorug06G0413800
rosa_samantha	Rh5AG221600 Rh5BG221500 Rh5CG244400 Rh5CG244700 Rh5DG226100 Rh5DG226200 Rh7AG013300 Rh7BG013200 Rh7CG013100 Rh7DG013400
rosa_wichuraiana	Rw5G020180 Rw7G001050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	4 cut(s)	59, 78, 86, 105
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	2 cut(s)	110, 145
AgsI	TTSAA	6 cut(s)	9, 129, 214, 277, 310, 366
AluBI	AGCT	4 cut(s)	283, 313, 401, 434
AluI	AGCT	4 cut(s)	283, 313, 401, 434
AlwI	GGATC	2 cut(s)	110, 145
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	2 cut(s)	303, 474
ApeKI	GCWGC	4 cut(s)	431, 491, 494, 497
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	5 cut(s)	119, 125, 363, 375, 432
AsuII	TTCGAA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	443, 503
BccI	CCATC	4 cut(s)	19, 104, 214, 403
BceAI	ACGGC	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	458
BfaI	CTAG	3 cut(s)	32, 83, 411
BfuI	GTATCC	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	5 cut(s)	60, 432, 492, 495, 498
BlsI	GCNGC	5 cut(s)	61, 433, 493, 496, 499
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	189, 331
Bpu14I	TTCGAA	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	2 cut(s)	71, 178
Bse118I	RCCGGY	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	54, 308
BseXI	GCAGC	2 cut(s)	443, 503
BshFI	GGCC	2 cut(s)	305, 476
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	3 cut(s)	72, 179, 191
BsnI	GGCC	2 cut(s)	305, 476
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	115, 150
BspACI	CCGC	4 cut(s)	59, 78, 86, 105
BspANI	GGCC	2 cut(s)	305, 476
BspCNI	CTCAG	2 cut(s)	55, 307
BspEI	TCCGGA	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	189, 331
BspPI	GGATC	2 cut(s)	110, 145
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	115, 150
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	63, 294
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	2 cut(s)	118, 153
BstMBI	GATC	2 cut(s)	115, 150
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 214, 329, 497
BstNSI	RCATGY	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	443, 503
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	305, 476
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	475
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	3 cut(s)	135, 173, 472
DdeI	CTNAG	2 cut(s)	63, 294
DpnI	GATC	2 cut(s)	117, 152
DpnII	GATC	2 cut(s)	115, 150
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	138, 176, 475
FaiI	YATR	4 cut(s)	136, 174, 272, 473
FatI	CATG	3 cut(s)	134, 172, 471
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	60, 432, 492, 495, 498
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	5 cut(s)	60, 432, 492, 495, 498
FspBI	CTAG	3 cut(s)	32, 83, 411
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	5 cut(s)	60, 432, 492, 495, 498
HaeIII	GGCC	2 cut(s)	305, 476
HapII	CCGG	3 cut(s)	72, 179, 191
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	138, 176, 475
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HindIII	AAGCTT	2 cut(s)	281, 311
HinfI	GANTC	2 cut(s)	125, 362
HpaII	CCGG	3 cut(s)	72, 179, 191
HphI	GGTGA	5 cut(s)	119, 125, 363, 375, 432
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	24, 229
Hpy188III	TCNNGA	3 cut(s)	72, 296, 462
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	178, 453
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	172, 176, 354, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 214, 329, 497
HpyF3I	CTNAG	2 cut(s)	63, 294
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	138, 176, 475
HspAI	GCGC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	115, 150
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	8 cut(s)	77, 85, 192, 204, 257, 281, 399, 447
Lsp1109I	GCAGC	2 cut(s)	443, 503
MaeI	CTAG	3 cut(s)	32, 83, 411
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	117, 152
MboI	GATC	2 cut(s)	115, 150
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	68, 135, 295
MroI	TCCGGA	1 cut(s)	71
MseI	TTAA	2 cut(s)	258, 285
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	3 cut(s)	72, 179, 191
MwoI	GCNNNNNNNGC	4 cut(s)	51, 214, 329, 497
NdeII	GATC	2 cut(s)	115, 150
NlaIII	CATG	3 cut(s)	138, 176, 475
NlaIV	GGNNCC	2 cut(s)	189, 331
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	125, 362
PkrI	GCNGC	5 cut(s)	61, 433, 493, 496, 499
Psp1406I	AACGTT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	189, 331
PspPI	GGNCC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	258, 285
SatI	GCNGC	5 cut(s)	60, 432, 492, 495, 498
Sau3AI	GATC	2 cut(s)	115, 150
Sau96I	GGNCC	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	37, 166, 189, 285, 291, 315, 403, 436, 445
SfuI	TTCGAA	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	176
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	4 cut(s)	59, 78, 86, 105
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	32, 83, 411
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	404
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	125, 362
Tru1I	TTAA	2 cut(s)	258, 285
Tru9I	TTAA	2 cut(s)	258, 285
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	4 cut(s)	431, 491, 494, 497
TspDTI	ATGAA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	460
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	3 cut(s)	32, 83, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.